TCONS_00020335-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020335-protein
Unique NameTCONS_00020335-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length127

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020335-protein ID=TCONS_00020335-protein|Name=TCONS_00020335-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
KNYNDLLVNHKTHGQGSNPNQNMSNLPSFYNTNTTELSPKVRYCAVSSIE
NSHRMPITDIQWIPDHIEIGRMGVVLENRLRYCSQIMTASSDGHVLFWDT
RASKSGVARTPMPENTSSNRVTTFQHL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011420XLOC_011420Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020335TCONS_00020335Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 26..126
e-value: 1.4E-6
score: 27.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..127
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 48..104

Blast
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BLAST of TCONS_00020335-protein vs. Swiss-Prot (Human)
Match: WDR63 (WD repeat-containing protein 63 OS=Homo sapiens GN=WDR63 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.654e-19
Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 0 
Query:   41 VRYCAVSSIENSHRMPITDIQWIPDHIEIGRMGVVLENRLRYCSQIMTASSDGHVLFWDTRASKSGVARTPMPENTSSNRV-----TTFQHL 127
            +R+CAVSSIEN H+  ITDI W+ D  EI RMG V ENR   C Q++T S+D  + FWD R  K    +T   +   S  +     +TF HL
Sbjct:  466 IRHCAVSSIENGHKKVITDIHWLSDTFEINRMGSVFENRSGICCQLVTCSADCTICFWDIRPQKPLTPQTTEKKKEESIEIPFDVPSTFLHL 557
The following BLAST results are available for this feature:
BLAST of TCONS_00020335-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR637.654e-1944.57WD repeat-containing protein 63 OS=Homo sapiens GN... [more]
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