TCONS_00026861 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026861
Unique NameTCONS_00026861
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026861 ID=TCONS_00026861|Name=TCONS_00026861|organism=Clytia hemisphaerica|type=transcript|length=605bp
GTTGAAATGTGAAGAGCAAGACAGCCAAATGACAAATGAGTCTAATTTAA
ACATTAGAAGATCAAAGACTCAAGAAGAAATCTCACCTCAAGTTCTTGGA
CATGACCATCGTCACGTTTACTCTGAAAATAACCTGCGAGGACAGACTAT
GAGAGGAGACGAACTATAAGAATTTAGTCGCACAGGTCTCAATCACATTA
CTATGCAAAGAATCAATGATGGAAAGCACATATCCTacatttaaagttat
tttttacattttcccgAGATAAAATCTAGCCTTGCTTTAATCGACTTCTA
ATTATAGAAAAATCTGTATAATATGTTTAAGATTATTTTCTACGTTTGTA
AGTTGTGATTAGGTATGATCTATATCAAGATTGCCATGGTTACTTGACAC
TTAACACGgagcacccctgtctcataggCCCGGAGGGAACTTCTTTCAAC
AGTCTCAACTTCCCGGTAAGCTAATTTTctcaccggggacaaaattttca
aGTGGGTCCTGagtcctactgggtctgtgacatAGGGATGTTATCGTGTA
ATAATCATGTACTGCAATAGACAGCGGTGTAATACtttgtaaaaattgaa
attag
Run BLAST on NCBI

transcript from alignment at sc0000591:175138..175742

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026861 ID=TCONS_00026861|Name=TCONS_00026861|organism=Clytia hemisphaerica|type=transcript|length=605bp|location=Sequence derived from alignment at sc0000591:175138..175742 (Clytia hemisphaerica)
ctaatttcaatttttacaaaGTATTACACCGCTGTCTATTGCAGTACATG
ATTATTACACGATAACATCCCTatgtcacagacccagtaggactCAGGAC
CCACttgaaaattttgtccccggtgagAAAATTAGCTTACCGGGAAGTTG
AGACTGTTGAAAGAAGTTCCCTCCGGGcctatgagacaggggtgctcCGT
GTTAAGTGTCAAGTAACCATGGCAATCTTGATATAGATCATACCTAATCA
CAACTTACAAACGTAGAAAATAATCTTAAACATATTATACAGATTTTTCT
ATAATTAGAAGTCGATTAAAGCAAGGCTAGATTTTATCTcgggaaaatgt
aaaaaataactttaaatgtAGGATATGTGCTTTCCATCATTGATTCTTTG
CATAGTAATGTGATTGAGACCTGTGCGACTAAATTCTTATAGTTCGTCTC
CTCTCATAGTCTGTCCTCGCAGGTTATTTTCAGAGTAAACGTGACGATGG
TCATGTCCAAGAACTTGAGGTGAGATTTCTTCTTGAGTCTTTGATCTTCT
AATGTTTAAATTAGACTCATTTGTCATTTGGCTGTCTTGCTCTTCACATT
TCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015089XLOC_015089Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026861-exon-sc0000591-1491911889:175138..175742TCONS_00026861-exon-sc0000591-1491911889:175138..175742Clytia hemisphaericaexon
TCONS_00026861-exon-sc0000591-1510915933:175138..175742TCONS_00026861-exon-sc0000591-1510915933:175138..175742Clytia hemisphaericaexon
TCONS_00026861-exon-sc0000591-1575043694:175138..175742TCONS_00026861-exon-sc0000591-1575043694:175138..175742Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000591supercontigsc0000591:175138..175742 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0895903	0.349458	0.101439	0	0.48327	0.190943	0.115182	0.323497	0.301984	0.280542	0	0.238666	0.357502	0.309391	2.54362	1.91078	1.9504	3.51565	4.38088	2.98974	3.03173	3.04205	0.719057	2.24135	0.192378	0.0858465	1.22846	1.70436	2.38652	1.21574
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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