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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00018812-protein ID=TCONS_00018812-protein|Name=TCONS_00018812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=782bp
MEIFKHHRSLFEIESVDKHVVSTNSEAISSSTDLDISQTLQDEAAALQSE
PKTITKNEDGNTQSCSQKSGHGGVNQLGGAFVNGRPLPERIRKKIVDLAH
QGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPSVV
QKISEYKLNNPSMFAWEIREKLLSDLICDNETVPSVSSINRIVRNRLASG
SLSKEPTEEEIDTSTNEIIKEEEPTNENPVFQGAIPIPIGALPANLNSLN
KLPHTPYSVNGILGIAVQQPNGTVIMCPPEYFAAHQVQGATDLSPTEHTN
GMAIQVVNEAEDSHTMADTPNLAAAQYLIPIGSTEDNQNLVQINYPPSLP
SLEAETVEKEHPLPQPPSSLVEDVSIPPTKLHINTTSIENKLKENIDNSI
SASNKILMKTTLNINTDSQEEEPLRVHQSPSPTTKYIYTNPSHQEEENYE
ARHPLQIQPAFFPNSPQTSPVSKHFLEHDRKPGRRLRTSFSTEQKQALEV
AFKKTPYPDAIQREQLATKNQIPEARVQVWFSNKRAKHRRLDKNFDLLKP
SKRRNSKSIESPLSPPYHPHMTPTYVPLSQQHSQIFHPSLIPIIPAAGQQ
IALISPSHLYNSVPPSSKESVEEHSKKTNEPTPVATANEHSPKNITYITA
PTLNSEQPTMIPIGAVHHRTHTEEAMEEMPQRPEQTNLDTTDDSPLTITN
ANLHSNNLTNNTETEESKHVLPSMKVLTRYNDRHHPSLSHSFIPPEQWLK
NSAAIALGGRASWTSPLTPSPPPLHVVSSSGQ Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001523 | Paired domain | PRINTS | PR00027 | PAIREDBOX | coord: 92..110
score: 76.94
coord: 130..147
score: 83.9
coord: 74..89
score: 86.03
coord: 112..129
score: 90.45 |
| IPR001523 | Paired domain | SMART | SM00351 | pax3 | coord: 70..194
e-value: 2.0E-89
score: 313.1 |
| IPR001523 | Paired domain | PFAM | PF00292 | PAX | coord: 70..194
e-value: 1.2E-69
score: 231.9 |
| IPR001523 | Paired domain | PROSITE | PS00034 | PAIRED_1 | coord: 104..120 |
| IPR001523 | Paired domain | PROSITE | PS51057 | PAIRED_2 | coord: 70..196
score: 62.417 |
| IPR001523 | Paired domain | CDD | cd00131 | PAX | coord: 70..196
e-value: 4.76743E-76
score: 242.71 |
| IPR001356 | Homeobox domain | SMART | SM00389 | HOX_1 | coord: 483..545
e-value: 2.2E-20
score: 83.7 |
| IPR001356 | Homeobox domain | PFAM | PF00046 | Homeobox | coord: 484..540
e-value: 1.1E-18
score: 66.7 |
| IPR001356 | Homeobox domain | PROSITE | PS50071 | HOMEOBOX_2 | coord: 481..541
score: 18.334 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | GENE3D | 1.10.10.10 | | coord: 139..201
e-value: 2.6E-31
score: 106.9 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | GENE3D | 1.10.10.10 | | coord: 73..138
e-value: 1.1E-29
score: 101.5 |
| None | No IPR available | GENE3D | 1.10.10.60 | | coord: 477..546
e-value: 2.3E-21
score: 74.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 701..720 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 761..782 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 611..640 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 549..575 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 48..72 |
| None | No IPR available | CDD | cd00086 | homeodomain | coord: 484..540
e-value: 8.19103E-19
score: 80.7504 |
| IPR017970 | Homeobox, conserved site | PROSITE | PS00027 | HOMEOBOX_1 | coord: 516..539 |
| IPR009057 | Homeobox domain-like | SUPERFAMILY | 46689 | Homeodomain-like | coord: 481..543 |
| IPR009057 | Homeobox domain-like | SUPERFAMILY | 46689 | Homeodomain-like | coord: 72..195 |
Blast
BLAST of TCONS_00018812-protein vs. Swiss-Prot (Human)
Match: PAX8 (Paired box protein Pax-8 OS=Homo sapiens GN=PAX8 PE=1 SV=2) HSP 1 Score: 244.973 bits (624), Expect = 6.379e-73 Identity = 126/202 (62.38%), Postives = 151/202 (74.75%), Query Frame = 0
Query: 66 SQKSGHGGVNQLGGAFVNGRPLPERIRKKIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPSVVQKISEYKLNNPSMFAWEIREKLLSDLICDNETVPSVSSINRIVRNRLASGSLSKEPTEEEIDTSTNEIIKEEEPTNENPVFQGAIPIPIGAL-PANLNSLNKLPHTPYSVNGILGIA 266
S +SGHGG+NQLGGAFVNGRPLPE +R++IVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATP VV+KI +YK NP+MFAWEIR++LL++ +CDN+TVPSVSSINRI+R ++ ++P +D+ K P G IP A+ P + L T YS+NG+LGIA
Sbjct: 5 SIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKV------QQPFNLPMDSCV--ATKSLSP--------GHTLIPSSAVTPPESPQSDSLGST-YSINGLLGIA 189
The following BLAST results are available for this feature:
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