TCONS_00018420-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018420-protein
Unique NameTCONS_00018420-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018420-protein ID=TCONS_00018420-protein|Name=TCONS_00018420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MVDINSKINSYYKHMQRHFQSHGRTKDFVGHSSKVHSVGWSCGGRHLASC
SFDKTVSVYTLEKERLVKECTMKGHSDSVDQLCWHPTNPNLLVSASGDKT
IRVWDARNSSNSKCTDVVSTKGENINICWSPNGNTIAVGNKEDLITFIDT
RTFKIMREEQFKFEVNEISWNNTNDLFFLTNGHGCVIILNYPNLKQIQTL
NAHPANCICIKFDPKGKYFATGSADALVSLWDLDELCCVRCFSRLDWPVR
TISFSHDGQMLASASEDLLIDIAMVETGEKIAEVPCSTPTFTVAWHPKEP
ILAFACDDKDKHDRDAGTIKLFGLQSSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010334XLOC_010334Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018420TCONS_00018420Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR013979TIF_beta_prop-like
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 219..233
score: 36.66
coord: 47..61
score: 31.78
coord: 92..106
score: 42.2
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 111..149
e-value: 19.0
score: 8.9
coord: 277..323
e-value: 140.0
score: 3.5
coord: 193..232
e-value: 3.6E-8
score: 43.1
coord: 21..60
e-value: 6.3E-5
score: 32.4
coord: 235..274
e-value: 2.7
score: 14.3
coord: 65..105
e-value: 1.3E-10
score: 51.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 27..59
e-value: 0.0038
score: 17.9
coord: 71..105
e-value: 3.5E-6
score: 27.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 200..234
score: 13.182
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 72..114
score: 15.087
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 28..69
score: 10.442
IPR013979Translation initiation factor, beta propellor-like domainPFAMPF08662eIF2Acoord: 117..223
e-value: 1.6E-6
score: 28.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 203..328
e-value: 2.6E-26
score: 92.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 25..202
e-value: 5.8E-40
score: 136.8
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 92..106
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 28..283
score: 29.978
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 23..309
NoneNo IPR availableCDDcd00200WD40coord: 28..270
e-value: 2.31178E-40
score: 143.244

Blast
[Close]
BLAST of TCONS_00018420-protein vs. Swiss-Prot (Human)
Match: THOC3 (THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1)

HSP 1 Score: 488.034 bits (1255), Expect = 1.015e-174
Identity = 230/328 (70.12%), Postives = 274/328 (83.54%), Query Frame = 0 
Query:    4 INSKINSYYKHMQRHFQSHGRTKDFVGHSSKVHSVGWSCGGRHLASCSFDKTVSVYTLEKERLVKECTMKGHSDSVDQLCWHPTNPNLLVSASGDKTIRVWDARNSSNSKCTDVVSTKGENINICWSPNGNTIAVGNKEDLITFIDTRTFKIMREEQFKFEVNEISWNNTNDLFFLTNGHGCVIILNYPNLKQIQTLNAHPANCICIKFDPKGKYFATGSADALVSLWDLDELCCVRCFSRLDWPVRTISFSHDGQMLASASEDLLIDIAMVETGEKIAEVPCSTPTFTVAWHPKEPILAFACDDKD-KHD--RDAGTIKLFGLQSSS 328
            ++S  + Y   MQ  F+ H +T++F+ HS+KVHSV WSC GR LAS SFDKT SV+ LEK+RLVKE   +GH DSVDQLCWHP+NP+L V+ASGDKTIR+WD R +   KC   V+TKGENINICWSP+G TIAVGNK+D++TFID +T +   EEQFKFEVNEISWNN N++FFLTNG+GC+ IL+YP LK +Q++NAHP+NCICIKFDP GKYFATGSADALVSLWD+DEL CVRCFSRLDWPVRT+SFSHDG+MLASASED  IDIA VETG+K+ EV C +PTFTVAWHPK P+LAFACDDKD K+D  R+AGT+KLFGL + S
Sbjct:   27 VSSGPSRYVLGMQELFRGHSKTREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWDVRTT---KCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPNDS 351
The following BLAST results are available for this feature:
BLAST of TCONS_00018420-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
THOC31.015e-17470.12THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=... [more]
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