TCONS_00026797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026797
Unique NameTCONS_00026797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026797 ID=TCONS_00026797|Name=TCONS_00026797|organism=Clytia hemisphaerica|type=transcript|length=393bp
ATATACCTGAGTACCCAGTATATTTTCAAGTTCAGCTCATTTAGAGGGAT
TCAATGCTCGAAAAGCTTCAAAACCTAGAATTCTGGAGTTTTTTAATTCG
AAACAATCTTAATGGCAAAAGTGGATGTAATATCATTAATTTGATAGTTC
GAGTATTTAATCTTAGCTTAAAGCtatgattttgagagaaaacaTAAACT
TTCTTGGGTTGAGCTGCGATATCTGTTGTTGATAAATTAAACTAATAGAT
TGTAGTACGCATTGTTTGTGAtggaatattttcatttttacgaCAAATTC
TCATCTTTACGGCTTTCTTTCTTCGAATTTGTTATTATAGCCGTCGAGTA
TATAGAGTACAATCTTATAATGTCTTATTTCATCGAATTCggt
Run BLAST on NCBI

transcript from alignment at sc0000587:188374..188852-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026797 ID=TCONS_00026797|Name=TCONS_00026797|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at sc0000587:188374..188852- (Clytia hemisphaerica)
ATATACCTGAGTACCCAGTATATTTTCAAGTTCAGCTCATTTAGAGGTGA
GAAGGTTTGTGAAGGGTGCTTTTTGGCTTTTTCTTCTCCGCAAAATCTAG
CATTAATTATTTCCATTCTCGTTCTTTCTTAGGGATTCAATGCTCGAAAA
GCTTCAAAACCTAGAATTCTGGAGTTTTTTAATTCGAAACAATCTTAATG
GCAAAAGTGGATGTAATATCATTAATTTGATAGTTCGAGTATTTAATCTT
AGCTTAAAGCTATGATTTTGAGAGAAAACATAAACTTTCTTGGGTTGAGC
TGCGATATCTGTTGTTGATAAATTAAACTAATAGATTGTAGTACGCATTG
TTTGTGATGGAATATTTTCATTTTTACGACAAATTCTCATCTTTACGGCT
TTCTTTCTTCGAATTTGTTATTATAGCCGTCGAGTATATAGAGTACAATC
TTATAATGTCTTATTTCATCGAATTCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015052XLOC_015052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026797-exon-sc0000587-1575043694:188807..188852TCONS_00026797-exon-sc0000587-1575043694:188807..188852Clytia hemisphaericaexon
TCONS_00026797-exon-sc0000587-1575043694:188374..188720TCONS_00026797-exon-sc0000587-1575043694:188374..188720Clytia hemisphaericaexon
TCONS_00026797-exon-sc0000587-1510915933:188807..188852TCONS_00026797-exon-sc0000587-1510915933:188807..188852Clytia hemisphaericaexon
TCONS_00026797-exon-sc0000587-1510915933:188374..188720TCONS_00026797-exon-sc0000587-1510915933:188374..188720Clytia hemisphaericaexon
TCONS_00026797-exon-sc0000587-1491911889:188807..188852TCONS_00026797-exon-sc0000587-1491911889:188807..188852Clytia hemisphaericaexon
TCONS_00026797-exon-sc0000587-1491911889:188374..188720TCONS_00026797-exon-sc0000587-1491911889:188374..188720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000587supercontigsc0000587:188374..188852 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.864314	0.601907	0	0	0	0	0	0.842363	2.35947	1.18156	2.01155	0.282853	1.10568	1.39056	1.09502	2.10852	1.25961	0.962046	1.73263	1.08597	2.75162	2.53605	2.25244	0	0	0.843748	1.05249	1.36332	0.665444
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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