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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026771 ID=TCONS_00026771|Name=TCONS_00026771|organism=Clytia hemisphaerica|type=transcript|length=2587bp
GTCAGTTCCGCTAAAGAATCCTGCAAGTGCTATAAATAGATTTTTCTTCC
CGATGTTAACCGATTCGGATTTATATCGGTAATTATCCCCGATACCCAAC
GGCGGGAatctaaaaatggtagaaaagctCCGGTGactatgaaatatttt
tctgaaaagtaaTACTGGTACATCTTGAAACCCTTGAACTTTGTTAGCCA
GTACCTGCTGTGCAGCCACCTAATCAGCATCTAACAGCAAACAAATTGAA
GAATTCTATCAGCATTCATCAATTATTTATCCAAGATCAGGTATGATTCA
GTTTCCCACTCACTCTGTCAGTCATTGATAACATAACAAAATGATGGCAA
AAATCCTTTTCAGTCCTTTTCTAGGTGGACCCTGCCCTTCCTTCCATCTT
GGGGAATGTTAGTCATATTAAGAACCAGCTAAAAAGTTTGTTAAAGATTA
AGGGATGCTCTTTGCTTACAAGCGAAGTAAATTATATAAAGTGCTGGAGT
TTTTGGCTGAATGTCAAATGAAATGTGCCCGTCTATTGAGTGACTACTAG
CTAGCAGCACAAATACTAATCTCTACAATCTATGTAAATCATTTTTTCTC
TATGCAATAGCTGTGTTGAAAGAGAAAAATCAATTACATGGAATAtatca
tttataaaaaaatttatgttgATAATAATTAGCTCATTCTCATTCAATAG
ACCGTTGTAATTGCCTTACAAGCTACATAAAAAACTATTATTTACTTGAG
ACTTGACTTTTAAAGCAAAGAATCTAGCACGATATCTAAAGGGATTAATG
AAAACTAAATGGTACTTTTTAATacagtaatttttttattataaagcaCT
CTGGGCAATCTTATTGTATATatatgggctcttccagaaaaatttgtcga
catctgtcttctaatttcgacacccttctttagagataggaacaatagaa
actgaggaaggtcagaattgctgattgactttgattagcgcgatgagagg
aaaaatctttagactatcagtgatttcgaccttcttattattcctatcta
taaagaaggatgtcgaaataaGAAGacagatgtcgacattagaccaactt
acggtagggGGTGGACGCCaggaattttcagataaaaaaagcactcggaa
atccagtcaatttttcaaaatgcttCGGAAATTtcactcaattttttatt
tgaacccTTGCAAATTTCACATACTgtaatttgtcaaaattttgaaaaaa
gtatctgaaattccagatttttctgccaaaaatttgattttgtattggaa
atccagGAGTTTTAATAGATGTATTGGCGAATGCGCCAGTCTTttaaata
actaattactctacatacattactttccctcagccaataaaaacatgata
aattatcttgtctctaggtaactgttgtggagtaattagttattcaaaag
aggGTAGCCTAAGCCAAAAGCTATtgcttttgtattggaaatccaggaat
ttcaaaaaaacattttgcctcAGAATTTTGctgtcgtccacccccctgta
atGGACTTTAACTGGAATTGAGCCCAAGAACAAATTTTAGCTGTTGGTTG
TTTGCATGACATTGTTCTCCCAAGAAATGAAATTCCAGAAGGGggctata
attttttttgcaattttgcaagAAGTTTGatttgagttgttttttttcaa
gggGTTGGATGTTCAAGCATTGTCCACCATATGAAATGATAAACAACAGA
AAGTGGCAGTATCCTATTCATTCAAAAAACGGTTTGTGGTGCCAAAGATA
TTTATTGAATGAGAAATGCATGCAGCAAAGAGGGTGAAATATTGACAACA
AGTATTGAGAAAGCGAAATCTTTACTTCAGAAGAAATAACATCCACCTTT
TTTTTCCGTATCTTTACTTCAGAAGTATCATTATATATCTTCGTTTTACG
TACCAATCATTTTAAATCCTATCCCGAGCAAGGAGATAACGATGAGTGAG
ACAAGAAGAATAAAGTAACAGATCAGAAAGGACACTGAGATGAgatgctt
ttaaaattgcattgGTGAGATTTATAAGCACCTTTAAAAGCTTAAATAAA
CTTAACCATCACTTAAGGCAACTTTTCAGAAATCGATAGAAAGTGGAGCA
CCAAATTATTCGTTCCCGCTGTCAAGCATGTTatgttggaaaaaatctac
tGTAATCAATTACATTTTTAAGAACACAAGAGATGAAACATTCCAGTGGA
AATGCACTTACAATTGATGACGtacaaatttttgcaaaatcgaACAAATC
AGAGTAACATTTATGGCCCTAGAGGCACTTTATATAAAAGTCATTGAACT
TTCAATTAACATTTAAGACGTGTCATTAGTCATtaatgttattgttttta
tagcatttttactgtttttaactTATCATTTTGTATCATTTATACCTGAT
GACTATGTTAAGACATCAAAATATATTattgtcaaaattaaattttgatc
aaagcaccaaaatttcttcaaaagttcacaatattttttaccaaagaGAT
TAAAATGATATAAATAAGCTTGTTTAATTCCAAGtgt Run BLAST on NCBI transcript from alignment at sc0000587:168658..171244+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026771 ID=TCONS_00026771|Name=TCONS_00026771|organism=Clytia hemisphaerica|type=transcript|length=2587bp|location=Sequence derived from alignment at sc0000587:168658..171244+ (Clytia hemisphaerica)
GTCAGTTCCGCTAAAGAATCCTGCAAGTGCTATAAATAGATTTTTCTTCC
CGATGTTAACCGATTCGGATTTATATCGGTAATTATCCCCGATACCCAAC
GGCGGGAatctaaaaatggtagaaaagctCCGGTGactatgaaatatttt
tctgaaaagtaaTACTGGTACATCTTGAAACCCTTGAACTTTGTTAGCCA
GTACCTGCTGTGCAGCCACCTAATCAGCATCTAACAGCAAACAAATTGAA
GAATTCTATCAGCATTCATCAATTATTTATCCAAGATCAGGTATGATTCA
GTTTCCCACTCACTCTGTCAGTCATTGATAACATAACAAAATGATGGCAA
AAATCCTTTTCAGTCCTTTTCTAGGTGGACCCTGCCCTTCCTTCCATCTT
GGGGAATGTTAGTCATATTAAGAACCAGCTAAAAAGTTTGTTAAAGATTA
AGGGATGCTCTTTGCTTACAAGCGAAGTAAATTATATAAAGTGCTGGAGT
TTTTGGCTGAATGTCAAATGAAATGTGCCCGTCTATTGAGTGACTACTAG
CTAGCAGCACAAATACTAATCTCTACAATCTATGTAAATCATTTTTTCTC
TATGCAATAGCTGTGTTGAAAGAGAAAAATCAATTACATGGAATAtatca
tttataaaaaaatttatgttgATAATAATTAGCTCATTCTCATTCAATAG
ACCGTTGTAATTGCCTTACAAGCTACATAAAAAACTATTATTTACTTGAG
ACTTGACTTTTAAAGCAAAGAATCTAGCACGATATCTAAAGGGATTAATG
AAAACTAAATGGTACTTTTTAATacagtaatttttttattataaagcaCT
CTGGGCAATCTTATTGTATATatatgggctcttccagaaaaatttgtcga
catctgtcttctaatttcgacacccttctttagagataggaacaatagaa
actgaggaaggtcagaattgctgattgactttgattagcgcgatgagagg
aaaaatctttagactatcagtgatttcgaccttcttattattcctatcta
taaagaaggatgtcgaaataaGAAGacagatgtcgacattagaccaactt
acggtagggGGTGGACGCCaggaattttcagataaaaaaagcactcggaa
atccagtcaatttttcaaaatgcttCGGAAATTtcactcaattttttatt
tgaacccTTGCAAATTTCACATACTgtaatttgtcaaaattttgaaaaaa
gtatctgaaattccagatttttctgccaaaaatttgattttgtattggaa
atccagGAGTTTTAATAGATGTATTGGCGAATGCGCCAGTCTTttaaata
actaattactctacatacattactttccctcagccaataaaaacatgata
aattatcttgtctctaggtaactgttgtggagtaattagttattcaaaag
aggGTAGCCTAAGCCAAAAGCTATtgcttttgtattggaaatccaggaat
ttcaaaaaaacattttgcctcAGAATTTTGctgtcgtccacccccctgta
atGGACTTTAACTGGAATTGAGCCCAAGAACAAATTTTAGCTGTTGGTTG
TTTGCATGACATTGTTCTCCCAAGAAATGAAATTCCAGAAGGGggctata
attttttttgcaattttgcaagAAGTTTGatttgagttgttttttttcaa
gggGTTGGATGTTCAAGCATTGTCCACCATATGAAATGATAAACAACAGA
AAGTGGCAGTATCCTATTCATTCAAAAAACGGTTTGTGGTGCCAAAGATA
TTTATTGAATGAGAAATGCATGCAGCAAAGAGGGTGAAATATTGACAACA
AGTATTGAGAAAGCGAAATCTTTACTTCAGAAGAAATAACATCCACCTTT
TTTTTCCGTATCTTTACTTCAGAAGTATCATTATATATCTTCGTTTTACG
TACCAATCATTTTAAATCCTATCCCGAGCAAGGAGATAACGATGAGTGAG
ACAAGAAGAATAAAGTAACAGATCAGAAAGGACACTGAGATGAgatgctt
ttaaaattgcattgGTGAGATTTATAAGCACCTTTAAAAGCTTAAATAAA
CTTAACCATCACTTAAGGCAACTTTTCAGAAATCGATAGAAAGTGGAGCA
CCAAATTATTCGTTCCCGCTGTCAAGCATGTTatgttggaaaaaatctac
tGTAATCAATTACATTTTTAAGAACACAAGAGATGAAACATTCCAGTGGA
AATGCACTTACAATTGATGACGtacaaatttttgcaaaatcgaACAAATC
AGAGTAACATTTATGGCCCTAGAGGCACTTTATATAAAAGTCATTGAACT
TTCAATTAACATTTAAGACGTGTCATTAGTCATtaatgttattgttttta
tagcatttttactgtttttaactTATCATTTTGTATCATTTATACCTGAT
GACTATGTTAAGACATCAAAATATATTattgtcaaaattaaattttgatc
aaagcaccaaaatttcttcaaaagttcacaatattttttaccaaagaGAT
TAAAATGATATAAATAAGCTTGTTTAATTCCAAGtgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026771-exon-sc0000587-1491911889:168658..171244 | TCONS_00026771-exon-sc0000587-1491911889:168658..171244 | Clytia hemisphaerica | exon |
| TCONS_00026771-exon-sc0000587-1510915933:168658..171244 | TCONS_00026771-exon-sc0000587-1510915933:168658..171244 | Clytia hemisphaerica | exon |
| TCONS_00026771-exon-sc0000587-1575043694:168658..171244 | TCONS_00026771-exon-sc0000587-1575043694:168658..171244 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000587 | supercontig | sc0000587:168658..171244 + |
Blast
The following BLAST results are available for this feature:
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