TCONS_00017032-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017032-protein
Unique NameTCONS_00017032-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017032-protein ID=TCONS_00017032-protein|Name=TCONS_00017032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=737bp
MMSADIPYKCSAARSLFVVRSLSDLPNELSIKILEYFNAKELISLRLVNN
HFKNLIDGTPSIWSRVSYQNMWPSTQKDYSLFRRGSNHGNVESLTKLGLS
HLYHYNLTVGEEKNKKDVQEHSIKAANYLHNLDLNIHPNKPLTWMLIRPP
WSMSKSICLKHLVHTQMLTLKESKMNGPLCYNIGRIFNLESDNNSNKEKS
TENFLQSCDLRCSHAKFELLLARKNEISADAGKTLQWVRELRECAMTGNK
ETIFELVGFALSNNSLFIEDMLNMNKLSKNLFSNCQCVRVDKLELYQPKI
NSLMRCILVDWLAEVAYMKDMSHEVLHAAVSYVDRYLMSRVVERTKLQLL
GISCLLLAAKSHYDARQVHILTVRESSWLTDQTYQYEDVVKMMGEIIGAF
AGDLWKPTSWNYLHTILALPMIDDTWKSCCHYVHDLTLQFTLFGSYKPSV
VACSSLFLAGLILDRDNSWPSELEEVTGFHVKDIANCASLIHYKSFTCSS
MKDDRGLPLESIKARYRSQRMHCIASLPLQDENTLKSRILSTDSTLSCAS
QEPLQFVVLSNDVDETLNTSIKSVDYDGDSECEVDSESDFDESFCVGRSR
LSSYHSVEEFSDDETTMDASSFNFRDPDNSLPPKESFTPIFNKSHNSSAT
KRNSFFDGVENHENKVTGFHGQYLEPLKYAGAQGSHDKDSPNKLDAACGT
TKPSTSRHQSPKYQPYQPCSSRYDHVGRRTRSSCTRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009528XLOC_009528Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017032TCONS_00017032Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013763Cyclin-like
IPR001810F-box_dom
IPR004367Cyclin_C-dom
IPR006671Cyclin_N
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013763Cyclin-likeSMARTSM00385cyclin_7coord: 310..398
e-value: 1.7E-10
score: 50.9
coord: 411..493
e-value: 2.0E-4
score: 30.7
IPR013763Cyclin-likeGENE3D1.10.472.10coord: 411..535
e-value: 1.2E-13
score: 50.7
IPR013763Cyclin-likeGENE3D1.10.472.10coord: 121..410
e-value: 4.8E-24
score: 84.1
IPR013763Cyclin-likeSUPERFAMILY47954Cyclin-likecoord: 286..400
IPR013763Cyclin-likeSUPERFAMILY47954Cyclin-likecoord: 407..530
IPR001810F-box domainSMARTSM00256fbox_2coord: 25..65
e-value: 1.6E-5
score: 34.3
IPR001810F-box domainPFAMPF12937F-box-likecoord: 23..67
e-value: 2.5E-8
score: 33.6
IPR001810F-box domainPROSITEPS50181FBOXcoord: 19..66
score: 14.558
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 22..75
IPR004367Cyclin, C-terminal domainSMARTSM01332Cyclin_C_2coord: 407..530
e-value: 1.0E-11
score: 54.9
IPR004367Cyclin, C-terminal domainPFAMPF02984Cyclin_Ccoord: 407..528
e-value: 3.1E-14
score: 53.0
IPR006671Cyclin, N-terminalPFAMPF00134Cyclin_Ncoord: 296..400
e-value: 1.1E-23
score: 83.3
IPR006671Cyclin, N-terminalPROSITEPS00292CYCLINScoord: 305..336
NoneNo IPR availableGENE3D1.20.1280.50coord: 20..120
e-value: 5.3E-10
score: 39.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 681..737
NoneNo IPR availableCDDcd00043CYCLINcoord: 435..492
e-value: 2.17661E-5
score: 42.2257
NoneNo IPR availableCDDcd00043CYCLINcoord: 304..360
e-value: 1.21564E-12
score: 63.7968

Blast
[Close]
BLAST of TCONS_00017032-protein vs. Swiss-Prot (Human)
Match: CCNF (Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 8.223e-74
Identity = 160/499 (32.06%), Postives = 278/499 (55.71%), Query Frame = 0 
Query:   25 LPNELSIKILEYFNAKELISLRLVNNHFKNLIDGTPSIWSRVSYQNMWPSTQKDYSLFRRGSNHGNVESLTKLGLSHLYHYNLTVGEEKNKKDVQEHSIKAANYLHNLD-LNIHPNKPLTWMLIRPPWSMSKSICLKHLVHTQMLTLKESKMN--GPLCYNIGRIFNLESDNNSNKEKSTENFLQSCDLRCSHAKFELLLARKNEISADAGKTLQWVRELRECAMTGNKETIFELVGFALSNNSLFIEDMLNMNKLSKNLFSNCQCVRVDKLELYQPKINSLMRCILVDWLAEVAYMKDMSHEVLHAAVSYVDRYLMSRVVERTKLQLLGISCLLLAAKSHYDARQVHILTVRESSWLTDQTYQYEDVVKMMGEIIGAFAGDLWKPTSWNYLHTILALPMIDDTWKSCCHYVHDLTLQFTLFGSYKPSVVACSSLFLAGLILDRDNSWPSELEEVTGFHVKDIANCASLIHYKSFTCSSMKDDRGLPLESIKARYRSQR 520
            LP ++   IL++ + ++++++R V++  K+L+D   S+W+  S+Q +WPS   +  LF R +  GN E+  KLG+++LY+  L+V +E      + + +KA+ +    + LN+    P  W+ IRPPWS+S S C K +VH  +    + +      + + +GR+ +L  D    ++++ + F ++    C  + + L  + +    +D G+ L   R+LR+ A  G  E    L     + N L +E +   +++   LF   Q V   ++   Q  +N  MR IL+DWL EVA MKD +   LH  V  VDRYL  R+V R +LQLLGI+C+++  +  + +++  ILT+RE+ WLTD TY+YED+V+MMGEI+ A  G +  PT  +Y   +L L  ++   +  C ++ +L+L  T   +Y P+ +A ++L LA L   +   W ++L ++TGF  +D+  C   +H K F   + KD R + L ++K R+  +R
Sbjct:   35 LPEDVLFHILKWLSVEDILAVRAVHSQLKDLVDNHASVWACASFQELWPSP-GNLKLFERAAEKGNFEAAVKLGIAYLYNEGLSVSDEAR---AEVNGLKASRFFSLAERLNVG-AAPFIWLFIRPPWSVSGSCC-KAVVHESLRAECQLQRTHKASILHCLGRVLSLFEDEE-KQQQAHDLFEEAAHQGCLTSSYLLWESDRRTDVSDPGRCLHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLE-VRASSEIVCQLFQASQAVSKQQVFSVQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDRYLRRRLVPRYRLQLLGIACMVICTR--FISKE--ILTIREAVWLTDNTYKYEDLVRMMGEIVSALEGKIRVPTVVDYKEVLLTLVPVELRTQHLCSFLCELSLLHTSLSAYAPARLAAAALLLARLTHGQTQPWTTQLWDLTGFSYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRFEDKR 521
The following BLAST results are available for this feature:
BLAST of TCONS_00017032-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCNF8.223e-7432.06Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2[more]
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