TCONS_00016597-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016597-protein
Unique NameTCONS_00016597-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length640

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016597-protein ID=TCONS_00016597-protein|Name=TCONS_00016597-protein|organism=Clytia hemisphaerica|type=polypeptide|length=640bp
MAQTTVNQFFVARKSNLPFHPSKKRKVDGTDIELNPPICKKRTTTRSRGR
PAKQKATTVKKNALPAPQVVNEVKEQKKEIPQSPKKTLIAIDSVISKSPV
GKIKVNNDINEQAKTILHSRGNAILQSSLQGKSLTSPAKASEVLLAMSPN
KKKKEKLELTIEKPVIEDDLKSRRELLRKKYSNLLDNAEAPKSSTTDNKI
PIESNNKLEELKESSRNRLRNKYKHLLNKESSTATSSKDVKVETTSIPSQ
KTISSPQKAHEKYKHLTEKNVTSTFQLPQKYKLLLEMFRCADSVLFLLQQ
RSEICTFDRLKKSVQSMCGREFNQKHLATMKTVYPTGFVFRQERGLYTAS
GDGKTNNYQLSIEADYKDLRLPTSSIKNNSSILITRRLKFESKLLALTKA
HHQKFLRKLNLKIDDNEIHRWHPHFKVEDVPDIEQSGLPKPPITKSFSSA
ADLLLKNKFAPKVADALNKASEETSSSTTASTEAKPSTSTSTASSSTKIS
KNQGNILKSVSSDLLERIRQKEQKKIELAMTRNPKQELRLSRMERLPDVS
RIIKAYFVAEKKAAITLEDCVQKLSESYGTDLHRNNLEEHVRLIAEVVPK
WLQILPVRKCMYVKLAKNFDINNVINTLADVKKKEEIGAN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009277XLOC_009277Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016597TCONS_00016597Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014939CDT1_Gemini-bd-like
IPR032054Cdt1_C
IPR011991WHTH_DNA-bd_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 167..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..259
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 469..500
NoneNo IPR availableCDDcd08674Cdt1_mcoord: 261..442
e-value: 4.27346E-55
score: 185.977
NoneNo IPR availableCDDcd08767Cdt1_ccoord: 505..629
e-value: 2.03661E-35
score: 128.939
IPR014939CDT1 Geminin-binding domain-likeSMARTSM01075CDT1_2coord: 277..440
e-value: 3.6E-41
score: 152.8
IPR014939CDT1 Geminin-binding domain-likePFAMPF08839CDT1coord: 277..439
e-value: 2.6E-43
score: 148.2
IPR032054DNA replication factor Cdt1, C-terminalPFAMPF16679CDT1_Ccoord: 512..604
e-value: 1.5E-23
score: 82.9
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 264..442

Blast
[Close]
BLAST of TCONS_00016597-protein vs. Swiss-Prot (Human)
Match: CDT1 (DNA replication factor Cdt1 OS=Homo sapiens GN=CDT1 PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 4.686e-68
Identity = 132/388 (34.02%), Postives = 225/388 (57.99%), Query Frame = 0 
Query:  259 AHEKYKHLTEKNVTSTFQLPQKYKLLLEMFRCADSVLFLLQQRSEICTFDRLKKSVQSMCGREFNQKHLATMKTVYPTGFVFRQERGLYTASGDGKTNNYQLSIE------ADYKDLRLPTSSIKNNSSILITRRLKFESKLLALTKAHHQKFLRKLN--LKIDDNEIHRWHPHFKVEDVPDIEQSGLPKPPITKSFSSAADLLLK--NKFAPKVADALNKASEETSSSTTASTEAKPSTSTSTASSSTKISKNQGNILKSVSSDLLERIRQKEQKKIELAMTRNPKQELRLSRMERLPDVSRIIKAYFVAEKKAAITLEDCVQKLSESYGTDLHRNNLEEHVRLIAEVVPKWLQILPVRKCMYVKLAKNFDINNVINTLADVKKKEE 636
            A++++  L +  +     LP KY++L EMFR  D+++ +L  RSE  TF ++++ VQ M  R F + ++  +KTVYP  + FRQER + T     + ++YQL+IE      AD    +L        +S L+ RR  F  KL+   K HH+ FL  L+  + + ++++ RWHP F V++VPDIE + LP+PP T+  ++A ++L +  N  +P++  AL++ +  +++ ++  +          A+          + LK VS DLLERIR KE +K    MTR P+QE RL R+ERLP+++R++++ FV+E+K A+++E    ++  S  T +    +E+H+ L++E++P WL +  +R   YVKL K  D+ ++   LA   + EE
Sbjct:  169 AYQRFHALAQPGLPGLV-LPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEECNVGQIKTVYPASYRFRQERSVPTFKDGTRRSDYQLTIEPLLEQEADGAAPQL-------TASRLLQRRQIFSQKLVEHVKEHHKAFLASLSPAMVVPEDQLTRWHPRFNVDEVPDIEPAALPQPPATEKLTTAQEVLARARNLISPRMEKALSQLALRSAAPSSPGS----PRPALPATPPATPPAASPSALKGVSQDLLERIRAKEAQKQLAQMTRCPEQEQRLQRLERLPELARVLRSVFVSERKPALSMEVACARMVGSCCTIMSPGEMEKHLLLLSELLPDWLSLHRIRTDTYVKLDKAADLAHITARLAHQTRAEE 544
The following BLAST results are available for this feature:
BLAST of TCONS_00016597-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDT14.686e-6834.02DNA replication factor Cdt1 OS=Homo sapiens GN=CDT... [more]
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