TCONS_00026757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026757
Unique NameTCONS_00026757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026757 ID=TCONS_00026757|Name=TCONS_00026757|organism=Clytia hemisphaerica|type=transcript|length=230bp
TTAGAAGCTCTCAATCATAGGTTTGttcaagtagaagctctcaatcaaag
atctggtcaagtagaagctctcaatCAAAGGTTTGTTCAAGTAGAAGCTC
TGAGTCAAAGGTTTGTTCATGAAGAAGCTCTCAATCAAAGgtttgttcaa
gtagaagctctcaatCAAAGATCTGGTCAAGTAGAAGCTCTCGATCAAAG
GTTTGttcaagtagaagctctcaatCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000582:104429..111501-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026757 ID=TCONS_00026757|Name=TCONS_00026757|organism=Clytia hemisphaerica|type=transcript|length=7073bp|location=Sequence derived from alignment at sc0000582:104429..111501- (Clytia hemisphaerica)
TTAGAAGCTCTCAATCATAGGTTTGTTCAAGTAGAAGCTCTCAATCAAAG
ATCTGGTCAAGTAGAAGCTCTCAATCAAAGGTTTGTTCAAGTAGAAGCTC
TGAGTCAAAGGTTTGTTCATGAAGAAGCTCTCAATCAAAGGTCTGGTCAA
GTAGAAGCTCTCATTTAAAGGTTTGTTCAAGTAGAAGCTCTCAGTCAAAG
ATTTGGCCAAGTAGAAGCTCTCGATCAAAGATCTGGTCAAGTAGAAGCTC
TCATTTAAAGGTTTGTTCAAGTAGAAGCTCTCATTTAAAGGTTTGTTCAA
GTAGAAGCTCTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
CAAGATTTTTGTATGATTGTCACAAGAAATGGCTTATGTTGTAGTGTACT
TATCATTCTTTCCTGAATCGAATGTTTTGTTTCCATTTTGACGGTTGGAT
TGAGAGATGCCAATTTCTTGCAAAAAAAGGACAATTTTGTAATTTTCACT
GACTTAGGTTAGCTTTCACTCAACCCTAGATCAAAATCTTCTTCTTCTCT
AATATTGACTTAACTGAATTAGAAAAAGGTGAACCAGGAGAACCAAGAAG
AACGGAGGTGAACTCATCTGGTAAACCGGCTGAATCGAGGTGAACCCAGA
ACCCAGATTCTGCACAACTTCTTACAGTACTTTGAAATTTTCTTTGTCCA
TTTTGAACGTGGAAAACCTTTTTGTTGTCAACACACTTTTGACAAGCCTT
TAAAACATGGAAAATTTTTTGTTGTCAATTAAAAAAATTTTCCTCCACAT
TTATCTGTTTAAATGTGAAAAACTTTTGTTGCTTATATGAGAGTTAATTC
ATTTAATCTTTACAGCTCACCCTAATAGACCTTTTCGCCTTTCCATCCAC
CATCTTGAATTGTATGCAAAAATAGAGGAACGAAAAAGCCGTGGTTGGAT
TTAGTTGAACAATATGCAAAACCTATGCAAGTTTACACAAAGATTAAAAA
GACAACAAAGCATCTTATAAAGAAATATTATAATCATTAGAACAATAAAA
GATGGAATTTCTTAATCCAAAAAGAAATATTTACAGAACAGCAATAGCCT
TTTAGAAATTTGTTCTTAAAGTCATTGCATATTCTGTTTTCATGCCTTTT
AAAAATTCCACCAAGACGGAGTACACACATCAAACTTTCAAAACACGCAA
ATTGAAAGCAGTAATTATGACGTCACACATTCAGCGGGTTCAGATCAATG
TTTTGATTTAATCATTTGGCGGCTCTATTCCCAGGAGAATATTTTACCGT
CAGCCGAATAAGGATTATTTTTTACCTTCGCTGGTGATTTTTCAGTTTCA
GTTTATGTCTAATGTTATGGATTTTTGAAGTGCTTGTTCTAAGAGATGAG
CGAATATAATTATTTTTAGTTTTCAAGAGAAGCAAATTTAATCTTTCTTC
TGCAAGATTACACTTTAATATAATGTCAATTCAATCATACATGTAAGTTT
TATATTGATACTTTCTTTTTGCATATGTTTTGCATACTTTCTAAGGGGAT
TTCACCACGGCAATTCGGCCACCATAATTTTTGCATACAATTCAATATGG
CTTATGGAAAGGCGAAAAGGTCTATGATAATGCAAAATGACTTTTTTGAA
ATTATGAAATTTTCCTTGGTTCATTCTATGATATCCTCATTTTTGTAAAG
GTGAAGCGTGATGCTACAGATCAAATCTGTGTTTTGACTGGACTCACCAA
CCTTTATAATTAGAAGGGTACAGTTTGTTTTTATTTTCTAAGTTCAAAAT
GCCCTGAGTGTGTTTAGTATTTTCATCTTCTTATATTGTTGTTTCTTTAA
ACTTTTTTGCTATTTATTCTAGAAAATGAAAAATAGAACGGTTGAAGCTT
CATTTTTCTCAATGAGAGATAATCTACAGTTGTCATTTTTACAGAGAGGG
ACTATAAAAAATTTGCAAATGATAGGATATTCGGAAAGACTGCAGCAAAT
GTAGAGGAAAACTGCACAAACTATTTTCGGGAAATATATCCTGAAACGGG
AAGGTGAAAATAACCCAAAAAGGAAACTGTTTCCAGATTGAAAATTTCAT
CACTTTTCTGTTTCCCGTTTCGATCAAGAACTTTTCATTGTTCCCGAACA
GGAAGTTGAATTTTTGTAAACAAAGCAGATTTTTGTTTCCCGATCAAGAA
GAAGTTTCCAAATCGGGAAGTTTTTATTTAGGAATGGGGACGTAGAATTA
AGAAATGATTACCCGGTGGATTTCTTAACTACCCGGTGAAAGGTAATTAT
TTACCCTGCCTCTTTTACAATAGGCATCAGTTATTTACCTTCCACGACCA
TTTCCGGAGTGCGCAGAGGTCACATTCCCGATCGGGATACTGGTCAACTT
CCTGATTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAAACTCTATCCATTTC
GGGAAGTTTCTCACCTTCCCGTTCGGGATATATTTCCCGTTAAGGCAATA
GTTGCCATTTCTATGTAGTGGTTCCGACTGACATTGTTTGTATGTCATTA
AAATGTTTTGCTTGCAACTTGCGAATCGAGGAGGCTCTGGAACGCTTCGC
AACTTTTATACATATACGGCTTGTAATACAAAAAGGACACAAAGAAAAAA
GTACTAATGTAACATTCCAAAGGTAGTTGAAACTATAAAGGTGAAAAAAA
ATGAAGATTTACCTTTCAAAGGGCCATAATCAGTCCAAAAGTTAATGCAT
GCACCTCAAAAACCGAAGAGATTCCCAACGAATCTCTTCGGTTTTTTGCG
AAGCGAATATACATGAGCGAAGCAGTTTTGCTATCGTGTATATGTACCTT
TAAATCTCACCTACGCTGGGGAGCGCAAATGAAAAATTACTATATATATC
CAATCCTTCAAACAAAGAAATGATTGGAAAAAGCCGTCCGCCCTGCCTTA
GATCAAACGTAGAATCGCGGCGGAGAGTACTGGAATTACGGATGGTTAAA
TTCGTTTTTTTCAAAAAGTGTCGCCTCGTGCGTTTAGATATACCAATTCT
TAAAAGCTACGGAGATAATACACCCTGTCGCCGGTACTAGATATGCATTG
TTTTTATCTCCCTAAGGTTTAAATTAGGAAATCTAAAGAAGAGATCGGAA
AATCAGCGCGGACTGGAAGCGTTCAAGAAGCGTTCAAAACGCTCAATTTT
TAAGAAGTCATTGCATTGACTGGAGCAAAGTCTTTCGAAGGGCTTTCGAA
CTTTTCCAAATTCGAATGTTGACTAAAAACAACATTGTTTTGAAAAGAGA
AATTGGTGTTTTGAAAAGAGATGGTGCTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGATTGAATCTTGGTC
GTATGTTGAAGTGCTGGACTTTTTGTATATTTTGAATTGATGGGAACAAA
AATATTTTGCGCTTTTGGATATGGCTAACCTGGAAGAATTTATTCCTCCC
CTTATTCAGTGGAAGGAGAAATGTTTGTTTGTCGTTGTTTATGAAATTTT
GGCTTGACCGACCCTCGGATGATGTGGGATCTTTGGTTGTTGTTTGTTGT
TTATGAATACTGGGAATACGCATCGATGGTCAGAGAAATAGAACATTGAC
ATGTGATTGTATTAAAAGATTTTATTGTTGGTAATGGTAATTGTAATGGT
AATGACTTGTAAAATGTCGAAATACAACGACAAAACATGACATTATGTTT
ATGGATGCATTTTAACTGTTGTAAATTCCTGTGCTACACAGCCGAGAAAA
AGTCACAGATTTTTTACTTTTTATGTGAAGAGTTTGCTCCTGTTTGTCAA
CAACTCGAGTAAGAGGGTAAAAGTCTGTCAAGTACATGTTTTTTTTTATA
AGCATACAAAAATCCGAAAACAGGCTCAGAGATGCTTAAGTCAAAAGCTT
AATAAGGCTGAAAAATGCTTGAGGNTTTATAAGCATACAAAAATCCGAAA
ACAGGCTCAGAGATGCTTAAGTCAAAAGCTTAATTAGGCTGAAAAATGCT
TGAGGGGATGCTTAAATCTAAAGCATAAATTTAGGGAAATACTGAAAATC
CATAAAATTCCAGCCGAAACAAGCCAAAATAAGGAAAAAAACATTTTTCG
TAGGCTCAAGTAATGCTTGCCATATGCTTAATTTTTCCCTATATCTGAGC
CTAGATATGCTTATAAGTCCAAGCTTATAAAAAACAACATGTACTTGCCT
CCACAGCAAACTTAAGCTAAGAGTTTCCCAACTTTGAAAAAAATCACAGC
CAGTAAAATTTAGAGGTTTTACTTAGTAGAATCGTTGAAGAATAATTTCT
ATATGTCAGCTTTTTTTATCTGGTTTTTCTTAATTTTTATCTCAGGATTT
TACAGCGATAATAGTTTAGATATAATTTTAGAACTTTGTTAAATTTTTCA
GAATTTACGATGCAATGTAATGATACAATATTCCTAATTAATATGGTTAT
TGAATTGATCTCTGTCTCAATAAACCGAGTGACTTTTTTTGATTCTCTGG
GCTCTTTGCAAGGAAGACCTTTTGAAGAGGCTAGAGAGGTATTTTCCCTC
CCCCGGGACGAAATTTTTGCCAAGTTTTCCAGCGGGTCTATGACACAGGG
GTGTTTATGTGAGGTAGAAAGTTTTCGAATGTTATTTTTATTCGAACGTT
CGAAATTTAAAATTAGAAAGATTCGAAAGTTCGATTTTGAACGCAAGGAG
TTCGAAACCGGAAGTAAAACGAGTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCA
AAGATCTGGTCAAGTAGAAGCTCTCATTTAAAGGTTTGTTCAAGTAGAAG
CTCTCAATCAAAGATCTGGTCAAGTAGAAGCTCTCGATCAAAGGTTTGTT
CAAGTAGAAGCTCTCAATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015033XLOC_015033Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026757-exon-sc0000582-1575043694:111362..111501TCONS_00026757-exon-sc0000582-1575043694:111362..111501Clytia hemisphaericaexon
TCONS_00026757-exon-sc0000582-1575043694:104429..104518TCONS_00026757-exon-sc0000582-1575043694:104429..104518Clytia hemisphaericaexon
TCONS_00026757-exon-sc0000582-1510915933:111362..111501TCONS_00026757-exon-sc0000582-1510915933:111362..111501Clytia hemisphaericaexon
TCONS_00026757-exon-sc0000582-1510915933:104429..104518TCONS_00026757-exon-sc0000582-1510915933:104429..104518Clytia hemisphaericaexon
TCONS_00026757-exon-sc0000582-1491911889:111362..111501TCONS_00026757-exon-sc0000582-1491911889:111362..111501Clytia hemisphaericaexon
TCONS_00026757-exon-sc0000582-1491911889:104429..104518TCONS_00026757-exon-sc0000582-1491911889:104429..104518Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000582supercontigsc0000582:104429..111501 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.614946	0.653368	0	0	2.33628	5.94291	18.3825	8.96635	7.26652	8.80843	0	0	0	1.54571	22.2749	32.2503
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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