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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026710 ID=TCONS_00026710|Name=TCONS_00026710|organism=Clytia hemisphaerica|type=transcript|length=2381bp
GAGCACACTTCGAAAGTACAATTATCTTCGAATTCATTTTGTGCGCATGC
TCATAACCTTGCTAATGTACTTTTGAGACATACTGGGTTACtgagaaaaa
atcgaaaaaattcgTAAACAAATCAAGATGGCTGCCAACATCGACCTTGA
CAAAATTAGTGGAGAAATTGAGAATGCTCTTACAACCGATATATCTGAAG
AGAATAAATCAAAGCTTTCCAAAATAAAAGACTGGTTTAAAGAGAGAAGA
TCAGAGGTCAAACCATGGGGTGAATTTTTTAATACCAGGAAGTTTGTAAG
ACCAAGTAATGCTTCCGAGGCAACATCAAGACTCGTTTCAAATGTTCGAG
TTTATCAAGCAAATTACATCATGATTTGCATGTTAATGACGTTTTACTGT
ATATTAACTTCACCTCTTTTGTTGATTGGACTTACTATGAGTGTTGGTGG
ATGTTTATACATTTCAACAAAAGGACAAGGAAAAACTATTAAGCTTTTTG
GAAAAGAGTTCAGCACAATACAACAATATGGACTAGTCTTTTTGATTTGC
ATGCCCTTATTCTTCTTTGCGTCAGCAGGGTCCACAGTGTTTTGGATCAT
AGGTGCATCAATGGTTATTATTGGTGCTCACGCAGTGATGCTCTCAGCCT
CAACAACTCCAACTGCTCTGGATATGGAAATGGAAGGAGTggaaacaatg
aaataaatctTCACAATTTTATTAGGTGATGGGTTAGTTTTCAAATGGAA
TCAATGTCACTTGTCTCTTTTTGTACCAAGCATCTAGGCAGGTGGATGGT
AAACCCTATCATTCCAATCTAGTTGGTAAAAATATCTGGTAGCTGTGGAT
TTTTTGGTTCCTGTTTCTCAtgtttgttgtatttgtatttgtatcttttt
ggcaaaaagtttctttttccaTCTTTGAGGCACGCATGAGACATATTGAA
CTTGGAGGGAAGGGCAGTACATTTTTGAAGACGGATGGGATTGTGTTGGT
GAGATCCAAAAAGGGACTTACGAAGAGAAGGGTGGAGAAAGTACCCTCTT
GCTTGCCTTAGTAGTAGTACCCAATCACAGGGTTATGGGTGTCCGACAGT
AGCTTTTAAAATTAAATGCAGTACAGCCTCTTTATCTCGAAATGTTCTCG
ATTTTCCACTCGAAACAATTTGTGTACCCCATACTGCCTCATACTGTATT
GCTCTAATTTGAAATATGCTCTATCTTACATGTGTTCGTAAATTATATCT
CTAANAACAATTTGTGTACCCCATACTGCCTCATACTGTATTGCTCTAAT
TTGAAATATGCTCTATCTTACATGTGTTCGTAAATTATATCTCTAagttt
gtaataaaatataTTAGTCTTGTAATAGGAAGCTACAGATAAGTTTGTTC
AGTTAAACAaacaattaactgaaaagattTATCAAATTTATGTTATCTTT
TGTAGCGTTTGTCGCTTTATACTTGCACAGAATTATTCATACACAATCTT
GGATCTAAGAAGTTACAGAAATGTTTACCCAATTTCTTAAACCAactatt
tgttttgattttgtatttaaTCAGTTTTGTATACTAACATTTTCATTGTA
CTGGTAGTTTCATTCTAGATGATCTTTTTTTATAGTTGTATTGaggaatt
tatttatttgatgaTGTCTGATATTTTATAGTTTTGAATCAGATGTTCGT
ATTTTATCTTCTTTTGCTTACAGCTGACgtgatataatttttttaaatta
tgtttgGCTTGAGACCAGGCTGCACACACCCCCTCttatatgttttgata
tagggcgCTGCGtgtatcgtgtatgaaattcctgtccgagagttaccccc
gtctttgtgtttttgagtttaaaaactTGATTAGCTTGTTTGTAAGTTTT
ATGTGATAGACcgaatttcattaaattttaatCATAAATTTGAATGGCTA
GAAGTTTATAAATCGTTGGATTTCTGaagctttttaagaaaattaaaaaa
taaagttaccccaaatttgaagtaactctcggacgagaatttcatactcg
atacgcatcccctatatcaaaatcaattctggATATGCACGCTGTCTAGC
TTGAGTCCTTGAGGCACGTACCATTTTCTTTAATGAATAACATACAGGTA
TTATAGATTTCACAGGCCTTGGAATGAGATCAATTCAATCAAGAAGTCga
ggaatcttttcaaaatattctcatACATTCTTCATTTATTTTCCTAACTC
TACACGCCATTATAATTAAAATACTTCTATCTTATAAATAATTGTTGTAA
TTACAAACATTTATTAACACCGTTATCAATATATTATACAATTATACTCC
TTGAAAGAAAGAATTTTATGGTGTTCTGGAC Run BLAST on NCBI transcript from alignment at sc0000581:211067..216841- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026710 ID=TCONS_00026710|Name=TCONS_00026710|organism=Clytia hemisphaerica|type=transcript|length=5775bp|location=Sequence derived from alignment at sc0000581:211067..216841- (Clytia hemisphaerica)
GAGCACACTTCGAAAGTACAATTATCTTCGAATTCATTTTGTGCGCATGC
TCATAACCTTGCTAATGTACTTTTGAGACATACTGGGTTACTGAGAAAAA
ATCGAAAAAATTCGTAAACAAATCAAGATGGCTGCCAACATCGACCTTGA
CAAAATTAGTGGAGAAATTGAGAATGCTCTTACAACCGATATATCTGAAG
AGAATAAATCAAAGCTTTCCAAAATAAAAGACTGGTTTAAAGAGAGAAGA
TCAGAGGTCAAACCATGGGGTGAATTTTTTAATACCAGGAAGTTTGTAAG
ACCAAGTAATGCTTCCGAGGCAACATCAAGACTCGTTTCAAATGTTCGAG
TTTATCAAGCAAATTACATCATGATTTGCATGTTAATGACGTTTTACTGT
ATGTAAGTCTTTCTTTTCAATTTAATGGAATCTTTTTTAACAATAATGCT
ATATTGCTGCTGTTTGAAATGGGCTCTCTTCCAGTTAAAGTCTGTATATC
CAGGCGTAGTTAATCGATATAATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCATACACGAGCCTGACCAAGGGCTA
TACACTTGCTTATAAAAAAAACAACATGTATCCAGAATAAAGTCTGAGCC
CCTCTGTTGCGATTTCGCGGGCAGCTGAGTAGCGGAAATACTACGCCCTA
ACAAATCGCTTCTGGCACTAAAAGGATACACGAAAAGTGTGTAGTCTGTT
ATCGGAAGTAATTTCCTGATTAACATACGGTGGCGGAGCAGCACAAACTT
GTCGAACAAAATTGGTTTATCAAACTGATCAAACCGCAACCCATTGATCA
AACTTAATCAAACACTCACAATCTTTTAAAAAATCTTAGAGCTTTTTTTT
TTGCTTTACAGTTTTTCTAATCTGTGTAATATTTACTGGGGAGATAAATT
TTATTGCGATATAAATGAGGACATTTTATTACTTAACTTTTAGATTAACT
TCACCTCTTTTGTTGATTGGACTTACTATGAGTGTTGGTGGATGTTTATA
CATTTCAACAAAAGGACAAGGAAAAACTATTAAGCTTTTTGGTAAGATCT
CAATCTTTTAAGAACAATTAAAATTGTTATATTTGAATGAAAGTTTTGAT
TATCTCTATTGTTCCAAATATTTCTGATATAAAAGTGATAATCTAGTTTG
TTTGTGTAGTTATACTGGGTAACGTGGTTCTTGCACTATTATATTCGTTT
TGAATTTTTGCTGATTAGATTGGTCAGGCATTTGTTGGCTATGCAAGTTT
CCCTCCATTGATACAACTTACTGGACTTCACGGTAATTGCTTGGAATGCA
GATAATTTTAAAAGTTTAATGTGACTTGCCACAATTATCAGCCTTGCACT
TGTGTTAGTTTTTGTATAATTTTTCAAACTTTTTTTTGCAGGAAAAGAGT
TCAGCACAATACAACAATATGGACTAGTCTTTTTGATTTGCATGCCCTTA
TTCTTCTTTGCGTCAGCAGGGTCCACAGTGTTTTGGATCATAGGTAAAGT
GCTTTTCATAATTTTTATCCTATTTTACCTACAAGCTCTATTGTCTGCAA
AGGTTAATGACTTTTAACAGCGTTTGAGTTTCAACCCCTTTGGTTATTTG
GTACAGGAGAAGTTGATATTTTGAAATTGTATTTTCATAGAGAGTTTTTT
GAATAAAAAATCATTTAAAACTTTGTCTATGTAAACTCCTTACCATTTAA
CTAATGGTTGAAAGCTGTGTATTTTTCTAATATTCAAACTTTGATTTTGA
TATACCAGGTCTGATACCTCTCTCAAATGATTATCATTTTCTACAAAGTA
TTTAGCTTTGATTAATAAATCTTTTTAAATCATATATTATCTCCAGGTGC
ATCAATGGTTATTATTGGTGCTCACGCAGTGATGCTCTCAGCCTCAACAA
CTCCAACTGCTCTGGATATGGAAATGGAAGGAGTGGAAACAATGAAATAA
ATCTTCACAATTTTATTAGGTGATGGGTTAGTTTTCAAATGGAATCAATG
TCACTTGTCTCTTTTTGTACCAAGCATCTAGGCAGGTGGATGGTAAACCC
TATCATTCCAATCTAGTTGGTAAAAATATCTGGTAGCTGTGGATTTTTTG
GTTCCTGTTTCTCATGTTTGTTGTATTTGTATTTGTATCTTTTTGGCAAA
AAGTTTCTTTTTCCATCTTTGAGGCACGCATGAGACATATTGAACTTGGA
GGGAAGGGCAGTACATTTTTGAAGACGGATGGGATTGTGTTGGTGAGATC
CAAAAAGGGACTTACGAAGAGAAGGGTGGAGAAAGTACCCTCTTGCTTGC
CTTAGTAGTAGTACCCAATCACAGGGTTATGGGTGTCCGACAGTAGCTTT
TAAAATTAAATGCAGTACAGCCTCTTTATCTCGAAATGTTCTCGATTTTC
CACTCGAAACAATTTGTGTACCCCATACTGCCTCATACTGTATTGCTCTA
ATTTGAAATATGCTCTATCTTACATGTGTTCGTAAATTATATCTCTAANA
ACAATTTGTGTACCCCATACTGCCTCATACTGTATTGCTCTAATTTGAAA
TATGCTCTATCTTACATGTGTTCGTAAATTATATCTCTAAGTTTGTAATA
AAATATATTAGTCTTGTAATAGGAAGCTACAGATAAGTTTGTTCAGTTAA
ACAAACAATTAACTGAAAAGATTTATCAAATTTATGTTATCTTTTGTAGC
GTTTGTCGCTTTATACTTGCACAGAATTATTCATACACAATCTTGGATCT
AAGAAGTTACAGAAATGTTTACCCAATTTCTTAAACCAACTATTTGTTTT
GATTTTGTATTTAATCAGTTTTGTATACTAACATTTTCATTGTACTGGTA
GTTTCATTCTAGATGATCTTTTTTTATAGTTGTATTGAGGAATTTATTTA
TTTGATGATGTCTGATATTTTATAGTTTTGAATCAGATGTTCGTATTTTA
TCTTCTTTTGCTTACAGCTGACGTGATATAATTTTTTTAAATTATGTTTG
GCTTGAGACCAGGCTGCACACACCCCCTCTTATATGTTTTGATATAGGGC
GCTGCGTGTATCGTGTATGAAATTCCTGTCCGAGAGTTACCCCCGTCTTT
GTGTTTTTGAGTTTAAAAACTTGATTAGCTTGTTTGTAAGTTTTATGTGA
TAGACCGAATTTCATTAAATTTTAATCATAAATTTGAATGGCTAGAAGTT
TATAAATCGTTGGATTTCTGAAGCTTTTTAAGAAAATTAAAAAATAAAGT
TACCCCAAATTTGAAGTAACTCTCGGACGAGAATTTCATACTCGATACGC
ATCCCCTATATCAAAATCAATTCTGGATATGCACGCTGTCTAGCTTGAGT
CCTTGAGGCACGTACCATTTTCTTTAATGAATAACATACAGGTATTATAG
ATTTCACAGGCCTTGGAATGAGATCAATTCAATCAAGAAGTCGAGGAATC
TTTTCAAAATATTCTCATACATTCTTCATTTATTTTCCTAACTCTACACG
CCATTATAATTAAAATACTTCTATCTTATAAATAATTGTTGTAATTACAA
ACATTTATTAACACCGTTATCAATATATTATACAATTATACTCCTTGAAA
GAAAGAATTTTATGGTGTTCTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00026710-exon-sc0000581-1575043694:216440..216841 | TCONS_00026710-exon-sc0000581-1575043694:216440..216841 | Clytia hemisphaerica | exon |
| TCONS_00026710-exon-sc0000581-1575043694:213651..213748 | TCONS_00026710-exon-sc0000581-1575043694:213651..213748 | Clytia hemisphaerica | exon |
| TCONS_00026710-exon-sc0000581-1575043694:213199..213300 | TCONS_00026710-exon-sc0000581-1575043694:213199..213300 | Clytia hemisphaerica | exon |
| TCONS_00026710-exon-sc0000581-1575043694:211067..212845 | TCONS_00026710-exon-sc0000581-1575043694:211067..212845 | Clytia hemisphaerica | exon |
| TCONS_00026710-exon-sc0000581-1510915933:216440..216841 | TCONS_00026710-exon-sc0000581-1510915933:216440..216841 | Clytia hemisphaerica | exon |
| TCONS_00026710-exon-sc0000581-1510915933:213651..213748 | TCONS_00026710-exon-sc0000581-1510915933:213651..213748 | Clytia hemisphaerica | exon |
| TCONS_00026710-exon-sc0000581-1510915933:213199..213300 | TCONS_00026710-exon-sc0000581-1510915933:213199..213300 | Clytia hemisphaerica | exon |
| TCONS_00026710-exon-sc0000581-1510915933:211067..212845 | TCONS_00026710-exon-sc0000581-1510915933:211067..212845 | Clytia hemisphaerica | exon |
| TCONS_00026710-exon-sc0000581-1491911889:216440..216841 | TCONS_00026710-exon-sc0000581-1491911889:216440..216841 | Clytia hemisphaerica | exon |
| TCONS_00026710-exon-sc0000581-1491911889:213651..213748 | TCONS_00026710-exon-sc0000581-1491911889:213651..213748 | Clytia hemisphaerica | exon |
| TCONS_00026710-exon-sc0000581-1491911889:213199..213300 | TCONS_00026710-exon-sc0000581-1491911889:213199..213300 | Clytia hemisphaerica | exon |
| TCONS_00026710-exon-sc0000581-1491911889:211067..212845 | TCONS_00026710-exon-sc0000581-1491911889:211067..212845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000581 | supercontig | sc0000581:211067..216841 - |
Blast
BLAST of TCONS_00026710 vs. Swiss-Prot (Human)
Match: PRAF1 (Prenylated Rab acceptor protein 1 OS=Homo sapiens GN=RABAC1 PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 5.010e-35 Identity = 55/136 (40.44%), Postives = 85/136 (62.50%), Query Frame = 2
Query: 227 KDWFKERRSEVKPWGEFFNTRKFVRPSNASEATSRLVSNVRVYQANYIMICMLMTFYCILTSPLLLIGLTMSVGGCLYISTKGQGKTIKLFGKEFSTIQQYGLVFLICMPLFFFASAGSTVFWIIGASMVIIGAHA 634
++W + RR+ ++PW F + ++F RP N E RLV NV YQ+NY+ + + + YC++TSP+LL+ L + G C + + + LFG+E S QY L I P F+ A AGS VFW++GA++V+IG+HA
Sbjct: 32 REWLERRRATIRPWSTFVDQQRFSRPRNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLVLFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHA 167
The following BLAST results are available for this feature:
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