TCONS_00013998-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013998-protein
Unique NameTCONS_00013998-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013998-protein ID=TCONS_00013998-protein|Name=TCONS_00013998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
MADSICCVIADKKNVKKIKQELEKRNILHSKYRITKMDPNTCAIPVSTDK
CSVENNLQTDLLPSFKEQQAVQYLNADELLCSKVITPRDALVQKLEGFFK
TKTEICENERNRILQQVPHKWEIHGDMLLLPRDCLTNAFWETGQKELWEI
FAKVLKVKRVAVMSRVQDNMIRTPKVALKLGADGWVKHVDNEIIYSYDVT
KCMFSKGNITEKMRIARLDCREEIVVDLFAGIGYFTLPYLVKAQAKKLYA
CEINPDACAALKKNLGLNHVDESRYQILQGDNREVCPKNIADRVNLGLIP
SSSLSWATACHALNQAKGGWLHIHENVDSGANALDSGTGSDAILQDHITN
AGEFEICQHVVKTEFVPCRDGLDVTDSEPPEDIELETSTLSEKNKAGPLD
TEVVNKERDLSITYEKSKGMSVDNYVFPECNDLERENRNLVRDCYKGKLS
KHKCVVWQAFVDDMLSKLKSYLPPLWKVTLRHIEFVKSYAPHVDHLVFDI
ECRPISDQLL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007821XLOC_007821Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013998TCONS_00013998Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030382MeTrfase_TRM5/TYW2
IPR029063SAM-dependent_MTases
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.150coord: 183..505
e-value: 3.4E-36
score: 123.8
NoneNo IPR availableGENE3D3.30.300.110coord: 111..182
e-value: 6.0E-10
score: 38.8
NoneNo IPR availableCDDcd02440AdoMet_MTasescoord: 225..324
e-value: 9.70488E-7
score: 45.8839
IPR030382SAM-dependent methyltransferase TRM5/TYW2-typePFAMPF02475Met_10coord: 120..301
e-value: 1.6E-31
score: 109.5
IPR030382SAM-dependent methyltransferase TRM5/TYW2-typePROSITEPS51684SAM_MT_TRM5_TYW2coord: 121..504
score: 54.311
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 112..331

Blast
[Close]
BLAST of TCONS_00013998-protein vs. Swiss-Prot (Human)
Match: TYW2 (tRNA wybutosine-synthesizing protein 2 homolog OS=Homo sapiens GN=TRMT12 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.157e-72
Identity = 139/357 (38.94%), Postives = 196/357 (54.90%), Query Frame = 0 
Query:    4 SICCVIADKKNVKKIKQELEKRNILHSKYRITKMDPNTCAIPVSTDKCSVENNLQ-------------TDLLPSFKEQQAVQYLNADELLCSKVITPRDALVQKLEGFFKTKTEICENERNRILQQVPHKWEIHGDMLLLPRDCLTNAFWETGQKELWEIFAKVLKVKRVAVMSRVQDNMIRTPKVALKLGADGWVKHVDNEIIYSYDVTKCMFSKGNITEKMRIARLDCREEIVVDLFAGIGYFTLPYLVKAQAKKLYACEINPDACAALKKNLGLNHVDESRYQILQGDNREVCPKNIADRVNLGLIPSSSLSWATACHALNQAKGGWLHIHENVDSGANALDSGTGSDAILQDH 347
            ++  V+ +    ++ ++ L+++ +  +++R+ KM   + A+PV  +    E +LQ                LP     +  Q  +  + LC +V        + +EG     +   E +       +P  W+ HG++LLL  DC     W+    ELWE  A  L V+R+A   RV  +  RTP V L LG  GWV+HVDN I Y +DVT+CMFS GNITEK+R+A L C  E++VDL+AGIGYFTLP+LV A A  ++ACE NP A  AL+ NL +N V + R QI  GDNR++   NIADRV LGLIPSS   W  AC  L Q  GG LHIH+NV+S         G   + ++H
Sbjct:   19 AVVAVVTEPWFTQRYREYLQRQKLFDTQHRVEKMPDGSVALPVLGETLP-EQHLQELRNRVAPGSPCMLTQLPDPVPSKRAQGCSPAQKLCLEV-------SRWVEGRGVKWSAELEAD-------LPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETVALALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSFGNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNLEINGVAD-RCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQALGVSKVEKEH 359
The following BLAST results are available for this feature:
BLAST of TCONS_00013998-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYW21.157e-7238.94tRNA wybutosine-synthesizing protein 2 homolog OS=... [more]
back to top