TCONS_00026712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026712
Unique NameTCONS_00026712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026712 ID=TCONS_00026712|Name=TCONS_00026712|organism=Clytia hemisphaerica|type=transcript|length=284bp
GTTGCTGCAAAATTGTGCATAACATAAACTATCAATTTCTCTGTATTTTC
CGTTTGAAAAAGTTCTATTGGGTCGATCAATATATCTATCCAgtatgttt
tttttgaaaacatcttCACTATCCTCAGGAAGCTCAGCCAATTCCTCCTC
AGACTTGAACATATGAAAACGCTCATCTGGTAAATTAGTATTTACAAACA
TGACCTGAGGGTATCCTTTGCGCAACCAAAGTTCAGGCATCAACTGATAG
ACAGCTTCTTGAACAGAACATTCTCTGTTATCNN
Run BLAST on NCBI

transcript from alignment at sc0000581:3602..3885

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026712 ID=TCONS_00026712|Name=TCONS_00026712|organism=Clytia hemisphaerica|type=transcript|length=284bp|location=Sequence derived from alignment at sc0000581:3602..3885 (Clytia hemisphaerica)
NNGATAACAGAGAATGTTCTGTTCAAGAAGCTGTCTATCAGTTGATGCCT
GAACTTTGGTTGCGCAAAGGATACCCTCAGGTCATGTTTGTAAATACTAA
TTTACCAGATGAGCGTTTTCATATGTTCAAGTCTGAGGAGGAATTGGCTG
AGCTTCCTGAGGATAGTGaagatgttttcaaaaaaaacatacTGGATAGA
TATATTGATCGACCCAATAGAACTTTTTCAAACGGAAAATACAGAGAAAT
TGATAGTTTATGTTATGCACAATTTTGCAGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015019XLOC_015019Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026712-exon-sc0000581-1491911889:3602..3885TCONS_00026712-exon-sc0000581-1491911889:3602..3885Clytia hemisphaericaexon
TCONS_00026712-exon-sc0000581-1510915933:3602..3885TCONS_00026712-exon-sc0000581-1510915933:3602..3885Clytia hemisphaericaexon
TCONS_00026712-exon-sc0000581-1575043694:3602..3885TCONS_00026712-exon-sc0000581-1575043694:3602..3885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000581supercontigsc0000581:3602..3885 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.67092	11.3438	4.212	2.78545	2.47086	3.41768	0	2.39439	1.89758	1.24797	5.45259	9.98347	3.82543	0.991158	3.0909	0.271007	1.27126e-06	0.592215	5.77483	1.2959	11.1042	5.18647	2.11456	1.66111	0.546363	1.39001	9.04339	6.83013	3.67217	7.621
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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