TCONS_00012947-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012947-protein
Unique NameTCONS_00012947-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1123

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012947-protein ID=TCONS_00012947-protein|Name=TCONS_00012947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1123bp
NIDTDSSRIEYLDPLSNGDQDVNNHFGFAIGFFQKNDNARLIIGAPQYKN
NTGALLTCRVNGLLKSCTQMNATDSTSDLRKDKSLNGELLGVSISTTEDS
ITACAPLAYGFLNKNPKCYNETTGQSYDPFTLPGPTNTSNDDVSRGCYES
RNMFLGRCPVFADESTYQYSETPCYQTDETQPAYPNYGKCLLGYGDIQSF
KLKNKLHQFITAPGSGLFTGSVVTTANGVKVSNFINVLNVKDDSNFFDNQ
EVIINRWKYTGRTTMLGYSSTKGNFTGSVLPGLASGAPWSKLYDGEVVVY
QYKLNSEQQTPDITQDDSILNVIDRITVPVQSKGGPGQFGGSIASIDVNG
DGFDDLAIGAPMFSRQFGNRIGQEEGRVFIFINNGKAKFEFNGNMTLTGE
NQENARFGATIINIGDINGDGTNDLAISAPWGGEDGNGAVYIYNVRDSQL
FDKPTQILQSPVQGGSFGYSITAAVIDSRVYPALAIGAPLSNRVYVYKAK
SIITLEDDLWVNRNTIPTDESNCRFKKTQYQCIDIKLNLKDISKNAPEVF
DVQVRIRADVRNSGEASRVFIYSNATDSLTNDLIRNVTFTRDQEIPFSHR
LYFSLARATNFDEPVRVLTSYTSVDTERNCKDGPCAILDQFGTLKGLKEV
RYLRQCGEDQVCDVDLDIEQTEIFVQKGSKSVIQPLFIGSFNDEITLKAT
VRNLNESAYQSKMEINFHDDFTLRQVSIPGRTITIPEYNGPVTNSTNGIF
DGTGKLVRFLLDNPMLENETISVEAQFMVKSLPRPKFFQYPFKLSVNSTG
NDANTTNNEVIAKLPMKIQTCVQVSFDQLGIETGIRRSVAEVLAYNATKK
PIAQPLTVEEAGPMVSYNILVQNSGIVPIDNMSLDITLLDRVGEQNLVYV
KELSIEGASCHLNNINSGKIKQGNATLGVSANTTEATDKSIENKPSFSKD
IIDCSSGQCQTMTCNDVLDFAVDGSVRLKLTMFFYLEALQKLNSKEMIIQ
ISTRFGGKFGSITESAQECPQATELRQPFKKLEKIIVVKDRVEWWVILVA
VVGALILLDIFCVILYRVGFFKRQRYEETAPLTGRMNGHLVYSEQYKRKM
VNVSSNSSESGSSSHVEKNLKGL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007273XLOC_007273Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012947TCONS_00012947Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000413Integrin_alpha
IPR013519Int_alpha_beta-p
IPR013649Integrin_alpha-2
IPR018184Integrin_alpha_C_CS
IPR032695Integrin_dom
Vocabulary: Cellular Component
TermDefinition
GO:0008305integrin complex
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0008305 integrin complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000413Integrin alpha chainPRINTSPR01185INTEGRINAcoord: 406..430
score: 53.76
coord: 1054..1073
score: 45.0
coord: 332..352
score: 36.47
coord: 493..512
score: 16.83
coord: 263..275
score: 36.21
IPR013519Integrin alpha beta-propellorSMARTSM00191int_alpha_rptcoord: 463..509
e-value: 0.017
score: 24.3
coord: 403..459
e-value: 3.0E-11
score: 53.4
coord: 22..74
e-value: 9.2
score: 12.6
coord: 335..394
e-value: 6.0E-9
score: 45.7
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 76..130
score: 5.502
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 325..390
score: 11.185
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 251..309
score: 6.311
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 453..514
score: 7.634
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 12..67
score: 7.972
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 394..452
score: 12.067
NoneNo IPR availableGENE3D2.60.40.1510coord: 663..819
e-value: 6.8E-12
score: 45.2
NoneNo IPR availableGENE3D2.130.10.130coord: 1..503
e-value: 4.5E-58
score: 196.7
NoneNo IPR availableGENE3D1.20.5.930coord: 1039..1075
e-value: 4.7E-11
score: 41.8
NoneNo IPR availablePFAMPF13517VCBScoord: 347..426
e-value: 2.1E-9
score: 37.7
NoneNo IPR availableGENE3D2.60.40.1460coord: 504..662
e-value: 6.7E-12
score: 45.6
NoneNo IPR availableGENE3D2.60.40.1530coord: 835..1008
e-value: 6.7E-12
score: 44.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1104..1123
NoneNo IPR availableSUPERFAMILY69318Integrin alpha N-terminal domaincoord: 208..302
coord: 28..112
coord: 337..499
IPR013649Integrin alpha-2PFAMPF08441Integrin_alpha2coord: 499..964
e-value: 1.8E-34
score: 119.4
IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved sitePROSITEPS00242INTEGRIN_ALPHAcoord: 1066..1073
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 659..814
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 841..1047
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 502..658

Blast
BLAST of TCONS_00012947-protein vs. Swiss-Prot (Human)
Match: ITAV (Integrin alpha-V OS=Homo sapiens GN=ITGAV PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 9.269e-46
Identity = 283/1147 (24.67%), Postives = 450/1147 (39.23%), Query Frame = 0
Query:    1 NIDTDSSRIEYLDPLSNGDQDVNNHFGFAIGFFQKNDNAR--LIIGAPQYKNNT--------GALLTCRVNGLLKSC--TQMNATDSTSDLRKDKSL---NGELLGVSISTTEDSITACAPLAYGFLNKNPKCYNETTGQSYDPFTLPGPTNTSNDDVSRGCYESRNMFLGRCPVFADESTYQYSETPCYQTDETQPAYPNYGKCLLGYGDIQSFKLKNKLHQFITAPGSGLFTGSVVTTANGVKVSNF-INVLNVKDDSNFFDNQEVIINRWKYTGRTTMLGYSSTKGNFTGSVLPGLASGAPWSK-------LYDGEVVVYQYKLNSEQQTPDITQDDSILNVIDRITVPVQSKGGPGQFGGSIASIDVNGDGFDDLAIGAPMFSRQFGNRIGQEEGRVFIFINNGKAKFE---FNGNMTLTGENQENARFGATIINIGDINGDGTNDLAISAPWGGEDGNGAVYIYNVRDSQLFDKPTQILQSPVQG----GSFGYSITAAV-IDSRVYPALAIGAPLSNRVYVYKAKSIITLEDDLWVNRNTIPTDESNCRFKKTQYQ--CIDIKLNLKDISKNA-PEVFDVQVRIRAD-VRNSGEASR-VFIYSNATDSLTNDLIRNVTFTRDQEIPFSHRLYFSLARATNFDE---PVRVLTSY-----TSVDTERNCKDGPCAILDQFGTLKGLKEVRYLRQCGEDQVCDVDLDIEQTEIFVQKGSKSVIQPLFIGSFNDEITLKATVRNLNESAYQSKMEINFHDDFTLRQVSIPGRTITIPEYNGPVTNST-----NGIFDGTGKLVRFLLD--NPMLENETISVEAQFMVKSLPRPKFFQYPFKLSVNSTGNDANTTNNEVIAKLPMKIQTCVQVSFDQLGIETGIRRSVAEVLAYNATKKPIAQPLTVEEAGPMVSYNILVQNSGIVPIDNMSLDITLLDRVGEQNLVYVKELSIEG-ASCHLN-NINSGKIKQGNATLGVSANTTEATDKSI---ENKPSFSKDIIDCSSGQCQTMTCNDVLDFAV---DGSVRLKLTMFFYLEALQK----LNSKEMIIQISTRFGGKFGSITESAQECPQATELRQPFKKLEKIIVVKDRVEW-----------WVILVAVVGALILLDIFCVILYRVGFFKR 1073
            N+D DS   EY  P         ++FGFA+ FF  + ++R  L++GAP  K NT        G +L C  +   + C   + +AT    D  KD  L   + +  G S+ + +D I ACAPL +         +     Q  +P                         +G C  F  + T      PC   D         G C  G+    S          +  PGS  + G +++      VS +  NV ++K     ++NQ +     +     + LGYS   G+F G  +    SG P +        +YDG+ +   Y    EQ                              FG S+A+ D+NGD + D+ IGAP+F  +  +   QE G+V + +      F+    NG           ARFG+ I  +GD++ DG ND+AI+AP+GGED  G VYI+N R + L   P+QIL+          SFGYS+  A  ID   YP L +GA   +R  +Y+A+ +IT+   L V  + +  D   C    T  +  C +++  LK   K   P   + QV +  D ++  G   R +F+YS +     N  I      + +E      L   L   + F +   P+ +   Y     T+ DT      G   IL+QF      ++   L  CGED VC   L     E+ V    K +    +IG  ++ +TL    +N  E AY++++            VSIP +     ++ G V N+      +  F    +  + + D  NPM     +    +F V            F L + S+ N  +  +  V  K+ + +   V++     G+      S   V       +    P T E+ GP+V +   ++N+G        L +    +     L+Y+    I+G  +C  +  IN  +IK        S  TTE  D      E     +K  +  S G   T+ C       +    G +    +   Y+++L      +N +      S +    F  I     E P       P + +    +V   V W           WVI++AV+  L+LL +   ++YR+GFFKR
Sbjct:   32 NLDVDSP-AEYSGP-------EGSYFGFAVDFFVPSASSRMFLLVGAP--KANTTQPGIVEGGQVLKCDWSST-RRCQPIEFDAT-GNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAPLYH---------WRTEMKQEREP-------------------------VGTC--FLQDGTKTVEYAPCRSQDIDADGQ---GFCQGGF----SIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIK-----YNNQ-LATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMA--------------------------AYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF-------ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEE------LIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTT-----GLQPILNQFTPANISRQAHILLDCGEDNVCKPKL-----EVSVDSDQKKI----YIGD-DNPLTLIVKAQNQGEGAYEAEL-----------IVSIPLQA----DFIGVVRNNEALARLSCAFKTENQTRQVVCDLGNPMKAGTQLLAGLRFSVHQQSEMD-TSVKFDLQIQSS-NLFDKVSPVVSHKVDLAVLAAVEIR----GVS-----SPDHVFLPIPNWEHKENPETEEDVGPVVQHIYELRNNGPSSFSKAMLHLQWPYKYNNNTLLYILHYDIDGPMNCTSDMEINPLRIKIS------SLQTTEKNDTVAGQGERDHLITKRDLALSEGDIHTLGCGVAQCLKIVCQVGRLDRGKSAILYVKSLLWTETFMNKENQNHSYSLKSSASFNVI-----EFPYKN---LPIEDITNSTLVTTNVTWGIQPAPMPVPVWVIILAVLAGLLLLAVLVFVMYRMGFFKR 1023          
The following BLAST results are available for this feature:
BLAST of TCONS_00012947-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITAV9.269e-4624.67Integrin alpha-V OS=Homo sapiens GN=ITGAV PE=1 SV=... [more]
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