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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026637 ID=TCONS_00026637|Name=TCONS_00026637|organism=Clytia hemisphaerica|type=transcript|length=569bp
GTCAAAACAATTGGAGTCACAGCAAACTTCAACGCTTCATCAACTCTACG
CAGATTGTTTGAAAGAAACGGGCAACACAAGTGAAAGTATGGACCAATAT
AATAAAGCTCTCAGACTGGACCCCGAAAATATGAAAGCATTGGAAGGGCT
ACAATTTCTTGAGAGAGATGCGAATTCTGAATTGGAAATGTCGAGTATAC
AAGATATTCGTAATCGGAGTAGCATGGAGTGGATGGACTGAGACTGCTGC
TCTTAGAAAGCAAGTAATGAGTGGTTTACGAAACCTTGAAGTGCAAACGA
TACCAAAAGACTATGTCTTTATGTGGAAACCACAGTCCTCTATTGGGTGA
CCATAAATAACAATGGAAATAAACAATGTTTTGCGCCAACGGAATGAttg
gattttactttcaatattAATGATAGAACTTCCAAAGGAAATGGATTGAG
TTCTGTTGACACTATGTACCAACTTTATGATTAGTTTTGTTTTTGGCAAT
TAATAGTGAACGCTTTATTGGATTTTCTTTGAATCAAGACACCTTTATAT
TCAGATGATTGATTAGACT Run BLAST on NCBI transcript from alignment at sc0000580:37545..40394- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026637 ID=TCONS_00026637|Name=TCONS_00026637|organism=Clytia hemisphaerica|type=transcript|length=2850bp|location=Sequence derived from alignment at sc0000580:37545..40394- (Clytia hemisphaerica)
GTCAAAACAATTGGAGTCACAGCAAACTTCAACGCTTCATCAACTCTACG
CAGATTGTTTGAAAGAAACGGGCAACACAAGTGAAAGTATGGACCAATAT
AATAAAGCTCTCAGGTACGAAATTCATCATCCTTTGTGACGTCATCTTAA
TCCAAAAAAAGAAAACGTTTTTTGAAAATAATTTTAAGATGTTTTAGGTG
TCCTCAGAACAAAAATTTTGAATTCATTTGCAAAAGGGAAAAAACGAGAG
CAAATGCAAATTTGACCAGCATTTATTCAGTTCATTTGAAGTAATTTCAT
TTTTCTTACAGGTCTTCAAAAATACGTTCAAATGCCTTGAAGTATTCTAA
CATTATTTAAAACGATTTATTTAGACTGGACCCCGAAAATATGAAAGCAT
TGGAAGGGCTACAATTTCTTGAGAGAGATGCGAATTCTGAATTGGAAATG
TCGAGTATACAAGATATTCGTAATCGGAGTAGCATGGAGGTACAATGCAC
ATTTTACTCTTACTAATACTGTGTCTTCCGAATGAAGTCGTCAATTTCTT
TTTCATAGTATTATTCGAATTTTCATTTGTTTGTTTTGGTGAGCAAGCTA
CCCAGTTGAAACGCAATGTTGTTTCAACATTTATCTAACGTTATATGGAC
GTTACGAACATTAGATAAACGTCAAAACAACGTTGTGCGTCAGCTGGGTA
ACATCGAAAGTGCTCAATACCCAGAAGAATGTCCTATTCAAATTCTCATT
TCCATAACACCAATTCTGCACATTCACATAACTAAAAGGAAGTTCGTTTC
ATTGTCATAAAGTCAACAGCCCCAAATCCTAAATCAATTATTAAGTTTTG
GATAAAATGATTAACAATTTAAAACGTTGGTGAATTCGTTATACATTTCT
TGGTGAGCTTGCATGAGTATCATTGAGAAGATTATGGATTGTTGGCCTTG
GTGTGTTCTTCAATAGAACAGTACTTTCTTTCTTTTTCAAGGCAAAAAGT
TAATATCCAAAGCAATTAACTTTGAGATTCAGCTTACAGTGACAGTGTAA
TCTTTTATCAAAATTAACCTACTCTTAGACCACATTTACACGCTACAGTC
CCGTTACGCTCCGAAACGAAATAAAGCCTCAAACTCAAGTTTAACGTCAC
TTCTAACCAATAGAATGGTTTCATTTCGTATTGAAATGAAACGGAACAAT
ACCCTGTAAACATGGTTTTAAATTATCTATAATAGAATGTTGAATTGGAT
TTTTATGGCCAGCGTCCAGTGTTTGATATGGCTTTTCTGTTTTGTCTTTT
AGGGATTAGATGCACTTGGGTCAGATCAAGACAATAATACGGTGAGCGTT
TTTTTGTTACAGTATTCTCGAATTCAGGGATATAGAAATGACTAAATATT
TTTCTGTTGGTTGACTTAAAATTCTAGATACTAGTAGGTTCTTTTCTTTA
CTTTAATCGAATGTTTTTTAAGATTTTATAGAGACTTATCCTCGCGGGTG
ACGCATTTTCAAATACTTCGTGGGGACTTATTATTATGAAAAGATCAATC
GTGGTTTTCCAATATTTTCGCCTCTTTTGCGGAAGCCACCTTAATCCACG
AGATCCACGAAATTTATTCCCCGAGAAAACTGATCTCATCAAAGTACTTC
AATTTCAGAACAGATATTCTTCTGTCTAGCCTGGATTCCACTCTCTCTCT
CTCAATATCTGGAGGGCTACCTTATTGGTATTCAAGTCTCAATATACTTT
TGAAATTTTATTTTTAAGATCACATTTCGAGTGCCTTGGTGTAACTTTTC
CCCTCGAGCTAAGATTTACTACTTTTAAAGCGACTCGAAGGCTCCTCTTT
CGATAGCTATCTACCCAAAGGTAGGGGAGGGCGCCACTCTTTCTCCCTGG
ACTGCTCCACTTACCCTCGATCCTGCTGAGCATCAAACAGAGTGGCATCA
AGTACCATTTTAGGAATCTATGACTCGGCTGGGGACTGAACCCACAACTT
TGTGCACCGTAGCCGGATGCTCTACCACTGCACAACGGTCCACAACGGTC
CACTTTTAAATGTTCCACTTCGAAGCCTTGTGATCAATAATCTCAAAACA
GGTCATCCATACTGTGCATACCACGCTTTGCTTTAAAGGAATATTGTGAA
TGTGATTATCTGACCTGGTTATTCAGCAAAAACAGTCAAAACGTTGCTTT
TTGTTTGAAAACGAAAGCGACTGGGTTCTAATGTTTAAGTTCATGATTGG
CTGATTTAGATGCGATTGTTTTGCTTTAGCCAATCAGCGCGCTGAAAAGC
TCATTTGATATTCATCCGGAAACTGGATGAAAAAGATCAAAGCGGTGCGC
CAACCTGGTTAGATTCTGTTACGGAGCCATGGTCTTTGGAGTGAATACAA
CCCATGCGCGGAGTAACATAATCAGCTCGGAGATTATGTGATCTATAGTG
TAAAAAAAGTCTGTATATGTTTATGATTTGCCTGATGTATCTTTCCATGT
TTATTTATAGTGGATGGACTGAGACTGCTGCTCTTAGAAAGCAAGTAATG
AGTGGTTTACGAAACCTTGAAGTGCAAACGATACCAAAAGACTATGTCTT
TATGTGGAAACCACAGTCCTCTATTGGGTGACCATAAATAACAATGGAAA
TAAACAATGTTTTGCGCCAACGGAATGATTGGATTTTACTTTCAATATTA
ATGATAGAACTTCCAAAGGAAATGGATTGAGTTCTGTTGACACTATGTAC
CAACTTTATGATTAGTTTTGTTTTTGGCAATTAATAGTGAACGCTTTATT
GGATTTTCTTTGAATCAAGACACCTTTATATTCAGATGATTGATTAGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026637-exon-sc0000580-1575043694:40281..40394 | TCONS_00026637-exon-sc0000580-1575043694:40281..40394 | Clytia hemisphaerica | exon |
| TCONS_00026637-exon-sc0000580-1575043694:39906..40020 | TCONS_00026637-exon-sc0000580-1575043694:39906..40020 | Clytia hemisphaerica | exon |
| TCONS_00026637-exon-sc0000580-1575043694:37545..37884 | TCONS_00026637-exon-sc0000580-1575043694:37545..37884 | Clytia hemisphaerica | exon |
| TCONS_00026637-exon-sc0000580-1510915933:40281..40394 | TCONS_00026637-exon-sc0000580-1510915933:40281..40394 | Clytia hemisphaerica | exon |
| TCONS_00026637-exon-sc0000580-1510915933:39906..40020 | TCONS_00026637-exon-sc0000580-1510915933:39906..40020 | Clytia hemisphaerica | exon |
| TCONS_00026637-exon-sc0000580-1510915933:37545..37884 | TCONS_00026637-exon-sc0000580-1510915933:37545..37884 | Clytia hemisphaerica | exon |
| TCONS_00026637-exon-sc0000580-1491911889:40281..40394 | TCONS_00026637-exon-sc0000580-1491911889:40281..40394 | Clytia hemisphaerica | exon |
| TCONS_00026637-exon-sc0000580-1491911889:39906..40020 | TCONS_00026637-exon-sc0000580-1491911889:39906..40020 | Clytia hemisphaerica | exon |
| TCONS_00026637-exon-sc0000580-1491911889:37545..37884 | TCONS_00026637-exon-sc0000580-1491911889:37545..37884 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000580 | supercontig | sc0000580:37545..40394 - |
Blast
The following BLAST results are available for this feature:
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