TCONS_00012532-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012532-protein
Unique NameTCONS_00012532-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012532-protein ID=TCONS_00012532-protein|Name=TCONS_00012532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=745bp
MCGVTISFWISSPESEDNDRPKPKPRPRPRPNPDLPGQKAGKGQQKAKPG
TTKGKATVAPQKKQNPSKPAKAKASQPMPEPSSQSGFSSYPVVVKCLNKK
TNENTLFYNFKQFGKIMPDGVTILKHDGVSKCIGYVNYEDSMSPQKAISQ
MNGKTIDGNVIQVENYVLKTARSQSTSSNAPEKEDYRPITDCSFFMEGKC
SKPSCPYRHPKNLKANVCKSWEGDTCKNISCPFLHPPKVKGTLRPKGSTT
SQPSNNPITLKVNTPVEVTIHSKQYRGIVRWCGFIEEMNNSMAGIELEVP
VDGGCNGIFQGRKYFICDEKRGYFVVSSQCKKLSTSNIAMATSAKIKTEY
ICGFYLKNRCTNGESCSAIHPPYMLSYCWYYRIQGESEVSVCPKGITKAV
EKQYRDVNSTDFSQDPYCINFEIASYSKYKGLNTDFKRVSTPSTVSCKAS
GEPLATGWKWYWFDDSSWVEYNLEYNFPGQVSSEIIETEYEKFQQKNDLK
PMKFYTKEFHYTLDFKTMLQKNLHTDKQRHVRRRPAPFPEKRERSLAPPT
DNFPSHWTSAPVIGYSAIPVKNDVLSKIERDFAQTMGGRMNYRIISVGEI
CNKQLYRQYTIKKKNMEESNSGQVKEMQLWHGTDNDIVEKICQQNFDWRM
VKTHAYGKGSYFARDASYSNSFTNGATSNICSMFYADVLVGQYCRGLSDY
NRPPERTKNVLYDSCVDNVSNPSIYVIFERDQFYPRYLIKYTRTL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007034XLOC_007034Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012532TCONS_00012532Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR000938CAP-Gly_domain
IPR000504RRM_dom
IPR004170WWE-dom
IPR012317Poly(ADP-ribose)pol_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO:0003950NAD+ ADP-ribosyltransferase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003950 NAD+ ADP-ribosyltransferase activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 347..372
e-value: 3.2
score: 12.2
coord: 212..237
e-value: 0.46
score: 19.0
coord: 187..211
e-value: 0.35
score: 19.9
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 351..373
score: 10.23
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 186..212
score: 11.498
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 213..238
score: 8.624
IPR000938CAP Gly-rich domainSMARTSM01052CAP_GLY_2coord: 262..331
e-value: 1.5E-14
score: 64.3
IPR000938CAP Gly-rich domainGENE3D2.30.30.190coord: 250..341
e-value: 9.9E-17
score: 60.1
IPR000938CAP Gly-rich domainPFAMPF01302CAP_GLYcoord: 271..329
e-value: 4.4E-12
score: 45.8
IPR000938CAP Gly-rich domainPROSITEPS50245CAP_GLY_2coord: 283..326
score: 10.569
IPR000938CAP Gly-rich domainSUPERFAMILY74924Cap-Gly domaincoord: 253..339
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 91..164
e-value: 3.2E-8
score: 43.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 92..161
e-value: 2.5E-10
score: 39.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 90..164
score: 10.497
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 72..174
NoneNo IPR availableGENE3D4.10.1000.10coord: 177..240
e-value: 1.2E-8
score: 34.3
coord: 342..542
e-value: 3.0E-4
score: 20.2
NoneNo IPR availableGENE3D3.30.70.330coord: 11..176
e-value: 1.4E-14
score: 53.6
NoneNo IPR availableGENE3D3.90.228.10coord: 563..743
e-value: 2.2E-47
score: 160.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 526..551
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..87
NoneNo IPR availableCDDcd01439TCCD_inducible_PARP_likecoord: 628..741
e-value: 8.73869E-40
score: 142.073
NoneNo IPR availableCDDcd00590RRM_SFcoord: 92..164
e-value: 1.56492E-11
score: 60.0113
NoneNo IPR availableSUPERFAMILY117839WWE domaincoord: 454..536
NoneNo IPR availableSUPERFAMILY56399ADP-ribosylationcoord: 575..742
IPR004170WWE domainPFAMPF02825WWEcoord: 458..533
e-value: 6.6E-13
score: 48.9
IPR004170WWE domainPROSITEPS50918WWEcoord: 446..533
score: 17.902
IPR012317Poly(ADP-ribose) polymerase, catalytic domainPFAMPF00644PARPcoord: 576..741
e-value: 9.8E-25
score: 87.2
IPR012317Poly(ADP-ribose) polymerase, catalytic domainPROSITEPS51059PARP_CATALYTICcoord: 553..745
score: 41.897

Blast
[Close]
BLAST of TCONS_00012532-protein vs. Swiss-Prot (Human)
Match: PAR12 (Poly [ADP-ribose] polymerase 12 OS=Homo sapiens GN=PARP12 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.972e-55
Identity = 144/438 (32.88%), Postives = 228/438 (52.05%), Query Frame = 0 
Query:  331 KKLSTSNIAMATSAKIKTEYICGFYLKNRCTNGESCSAIHPPYMLSYCWYYRIQGESEVSVCPKGITKA-----VEKQYRDVNSTDFSQDPYCINFEIASYSKYKGLNTDFKRVSTPSTVSCKASGEPLATGWKWYWFDD-SSWVEYNLEYNFP--GQVSSEIIETEYEKF---QQKNDLKPMKFYTKEFHYTLDFKTMLQKNLHTDKQRHVRRRPAPFPEKRERSLA------PPTDNFPSHWTSA--PVIGYSAIPVKN--DVLSKIERDFAQTMGGRMNYRIISVGEICNKQLYRQYTIKKKNMEESNSGQ-VKEMQLWHGTDNDIVEKICQQNFDWRMVKTH--AYGKGSYFARDASYSNSFTNGATSNICSMFYADVLVGQYCRGLSDYNRPP--ERTKNVLYDSCVDNVSNPSIYVIFERDQFYPRYLIKYT 742
            +K S+ +++  T ++ + + IC ++++  C+  + C  +H  + L Y W +  +G+ E     + I +A     +E+     +++ F    +C+NF   +Y       T  +R+ST S+V+ K     L T W WYW D+  SW EY  +        VSS  +E  Y  +           +KF   + +Y LDFK  +QKNL     + V RRP     +   ++       P   + P +W S+  P  G+  I + +  +   K+   F +T+     Y +  +  + N  L+  Y  +K  M++ N G+ V E QL+HGT    V+ ICQQNFDWR+   H  +YGKGSYFARDA+YS+ ++   T    +MF A VLVG++ RG + + RPP  E   N  YDSCV++VS+PSI+VIFE+ Q YP Y+I+YT
Sbjct:  255 RKDSSGSVSPNTLSQEEGDQICLYHIRKSCSFQDKCHRVH--FHLPYRWQFLDRGKWEDLDNMELIEEAYCNPKIERILCSESASTF--HSHCLNFNAMTYGA-----TQARRLSTASSVT-KPPHFILTTDWIWYWSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGSDGQAATLKFQAGKHNYELDFKAFVQKNLVYGTTKKVCRRPKYVSPQDVTTMQTCNTKFPGPKSIPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLP---FYFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAYSHHYSKSDTQTH-TMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQYT 678
The following BLAST results are available for this feature:
BLAST of TCONS_00012532-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAR122.972e-5532.88Poly [ADP-ribose] polymerase 12 OS=Homo sapiens GN... [more]
back to top