TCONS_00026622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026622
Unique NameTCONS_00026622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026622 ID=TCONS_00026622|Name=TCONS_00026622|organism=Clytia hemisphaerica|type=transcript|length=811bp
AAAACCTCGTAAAGATCTTTCAAAGATAGTACACTCGGACTGTGGTAATC
TCGAATCAACCTTTGTTGAAATCGTCTTTTGTTGGATGTATCTACAAACA
TCCCCTTTTAGACATCGACCTTTTCAATGATAAATTCTTAAAACCTTTGC
TGAGAAAATCCTGTCAAGAAAATAAAAGTCTTATTTTATTAGGCGATTTC
AACATNCCTTTGCTGAGAAAATCCtgtcaagaaaataaaaatcttatttt
gttaGGCGATTTCAACATAGACCTTTTGACTTGTGACTCTGTGATTTCTC
ACTCCAAATTTCTTGACATTCTTGGTGCCTACCAGATTCTACCAACTATT
ACCTTGCCAACGCGGATCACTGATACCCCGAGATTGGTCTAGATTTGACG
AGGCTAGTTTCAAAGAAGAATTTGATAGCGTCAATTGGAATGGTcttctt
gaaattgaaaagggAAATGTTGACTCatcttttgattcttttttgacTCG
TTTTACTTCTTTGTATATTAAGCATGTTCCTTTGAAACAGTTGACCAGAC
GTCAAGCTAACCTTCTACTCAAACCTTGGATCCCCAAAGGTATTCTCGTC
TCTATGAACATCAGAGATAGCCTTAAAACCGactatttgaaagtttctga
tTCTTCATCCGATCTTAAGAATTTTCTTCGTGAcagatataaattttatc
gagATCGCATAGTTTCTCTTATCCGTGCGAGTAAAAAACTCCATTATTCt
cgttacttttttcaaaactcaGGCAATCTTCGAAAATTATGGCAAGGCGT
CAGAGAGATTA
Run BLAST on NCBI

transcript from alignment at sc0000576:148536..149346

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026622 ID=TCONS_00026622|Name=TCONS_00026622|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at sc0000576:148536..149346 (Clytia hemisphaerica)
TAATCTCTCTGACGCCTTGCCATAATTTTCGAAGATTGCCtgagttttga
aaaaagtaacgaGAATAATGGAGTTTTTTACTCGCACGGATAAGAGAAAC
TATGCGATctcgataaaatttatatctgTCACGAAGAAAATTCTTAAGAT
CGGATGAAGAatcagaaactttcaaatagtCGGTTTTAAGGCTATCTCTG
ATGTTCATAGAGACGAGAATACCTTTGGGGATCCAAGGTTTGAGTAGAAG
GTTAGCTTGACGTCTGGTCAACTGTTTCAAAGGAACATGCTTAATATACA
AAGAAGTAAAACGAgtcaaaaaagaatcaaaagatGAGTCAACATTTccc
ttttcaatttcaagaagACCATTCCAATTGACGCTATCAAATTCTTCTTT
GAAACTAGCCTCGTCAAATCTAGACCAATCTCGGGGTATCAGTGATCCGC
GTTGGCAAGGTAATAGTTGGTAGAATCTGGTAGGCACCAAGAATGTCAAG
AAATTTGGAGTGAGAAATCACAGAGTCACAAGTCAAAAGGTCTATGTTGA
AATCGCCtaacaaaataagatttttattttcttgacaGGATTTTCTCAGC
AAAGGNATGTTGAAATCGCCTAATAAAATAAGACTTTTATTTTCTTGACA
GGATTTTCTCAGCAAAGGTTTTAAGAATTTATCATTGAAAAGGTCGATGT
CTAAAAGGGGATGTTTGTAGATACATCCAACAAAAGACGATTTCAACAAA
GGTTGATTCGAGATTACCACAGTCCGAGTGTACTATCTTTGAAAGATCTT
TACGAGGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014979XLOC_014979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026622-exon-sc0000576-1491911889:148536..149346TCONS_00026622-exon-sc0000576-1491911889:148536..149346Clytia hemisphaericaexon
TCONS_00026622-exon-sc0000576-1510915933:148536..149346TCONS_00026622-exon-sc0000576-1510915933:148536..149346Clytia hemisphaericaexon
TCONS_00026622-exon-sc0000576-1575043694:148536..149346TCONS_00026622-exon-sc0000576-1575043694:148536..149346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000576supercontigsc0000576:148536..149346 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.486114	0.608177	0.731549	0.32641	0.401739	0.184246	0.186696	0.410037	0.148985	0.457956	0.597072	0.134779	0.401454	0.122112	0.349204	0.179561	0.855747	1.30847	0	0	0.810787	1.22762	0.346959	0.402396	0.640331	0.47535	0.484854	0.112544	0.130822	0.139397
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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