TCONS_00011356-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011356-protein
Unique NameTCONS_00011356-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011356-protein ID=TCONS_00011356-protein|Name=TCONS_00011356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVY
YNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETF
CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADL
RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVK
TAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEFEEEEEEDAE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006366XLOC_006366Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011356TCONS_00011356Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002453Beta_tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR017975Tubulin_CS
IPR013838Beta-tubulin_BS
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 408..442
NoneNo IPR availableGENE3D1.10.287.600coord: 374..442
e-value: 1.6E-36
score: 123.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 419..445
NoneNo IPR availableCDDcd02187beta_tubulincoord: 2..426
e-value: 0.0
score: 911.179
IPR000217TubulinPRINTSPR01161TUBULINcoord: 106..130
score: 69.97
coord: 370..398
score: 67.7
coord: 51..70
score: 71.21
coord: 132..150
score: 79.22
coord: 151..172
score: 57.95
coord: 93..104
score: 76.26
coord: 190..210
score: 69.69
coord: 10..30
score: 73.73
coord: 176..189
score: 79.11
IPR002453Beta tubulinPRINTSPR01163BETATUBULINcoord: 412..430
score: 93.14
coord: 152..164
score: 90.86
coord: 311..329
score: 80.27
coord: 41..58
score: 81.78
coord: 265..281
score: 85.71
coord: 377..388
score: 80.76
coord: 329..343
score: 89.56
coord: 108..126
score: 88.33
coord: 347..370
score: 81.67
coord: 212..224
score: 85.45
coord: 230..239
score: 83.43
coord: 88..99
score: 94.76
coord: 245..258
score: 89.06
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 246..383
e-value: 1.0E-50
score: 184.5
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 260..373
e-value: 3.0E-48
score: 162.4
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 261..381
e-value: 1.6E-42
score: 144.6
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 47..244
e-value: 2.2E-70
score: 249.8
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..211
e-value: 2.5E-69
score: 233.3
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..259
e-value: 4.3E-131
score: 435.5
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..243
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 140..146
IPR013838Beta tubulin, autoregulation binding sitePROSITEPS00228TUBULIN_B_AUTOREGcoord: 1..4
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 244..429

Blast
[Close]
BLAST of TCONS_00011356-protein vs. Swiss-Prot (Human)
Match: TBB4B (Tubulin beta-4B chain OS=Homo sapiens GN=TUBB4B PE=1 SV=1)

HSP 1 Score: 922.924 bits (2384), Expect = 0.000e+0
Identity = 436/444 (98.20%), Postives = 442/444 (99.55%), Query Frame = 0 
Query:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEFEEEEEEDA 444
            MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA++EGEFEEE EE+ 
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFEEEAEEEV 444
The following BLAST results are available for this feature:
BLAST of TCONS_00011356-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBB4B0.000e+098.20Tubulin beta-4B chain OS=Homo sapiens GN=TUBB4B PE... [more]
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