TCONS_00026544 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026544
Unique NameTCONS_00026544
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026544 ID=TCONS_00026544|Name=TCONS_00026544|organism=Clytia hemisphaerica|type=transcript|length=257bp
AGAGAAATTGCGTGCTGACAGTATATGGTTTGACTTTGATGTGAAGTGGT
ATTCTGAAAAGAGAAATAACAACAAAGGTAAGCTAGCCGTCGCTTTTCct
aatacaaaatatttttaaacttgacttcactgctTGTGGTGCTCCGGTGT
CAGTTGCGAACTCAGAGCTTAGAGTTTGGTTGCATTTGACGCTGAGCGAT
ACATTAAGGAGGACGGCGATAATGTGGAGTTCGTCTGGTGAGATGGTAGA
TTGCAAG
Run BLAST on NCBI

transcript from alignment at sc0000574:215538..215794

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026544 ID=TCONS_00026544|Name=TCONS_00026544|organism=Clytia hemisphaerica|type=transcript|length=257bp|location=Sequence derived from alignment at sc0000574:215538..215794 (Clytia hemisphaerica)
CTTGCAATCTACCATCTCACCAGACGAACTCCACATTATCGCCGTCCTCC
TTAATGTATCGCTCAGCGTCAAATGCAACCAAACTCTAAGCTCTGAGTTC
GCAACTGACACCGGAGCACCACAagcagtgaagtcaagtttaaaaatatt
ttgtattagGAAAAGCGACGGCTAGCTTACCTTTGTTGTTATTTCTCTTT
TCAGAATACCACTTCACATCAAAGTCAAACCATATACTGTCAGCACGCAA
TTTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014931XLOC_014931Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026544-exon-sc0000574-1491911889:215538..215794TCONS_00026544-exon-sc0000574-1491911889:215538..215794Clytia hemisphaericaexon
TCONS_00026544-exon-sc0000574-1510915933:215538..215794TCONS_00026544-exon-sc0000574-1510915933:215538..215794Clytia hemisphaericaexon
TCONS_00026544-exon-sc0000574-1575043694:215538..215794TCONS_00026544-exon-sc0000574-1575043694:215538..215794Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000574supercontigsc0000574:215538..215794 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.53223	1.35022	0.973891	0	2.06893	5.25614	7.25159	2.59166	1.65063	2.66283	1.7394	3.35093	1.7968	1.3088	0	1.02261	1.54777	5.53888	0	2.43897	5.28694	7.40142	1.576	2.34891	2.29469	6.30199	2.63791	1.00572	0.762804	0.388244
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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