TCONS_00008136-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008136-protein
Unique NameTCONS_00008136-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008136-protein ID=TCONS_00008136-protein|Name=TCONS_00008136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
MFLKGGLILTLCAATFAVQYGTEKCTRDWEKIGCFKDVVTPSRPLPDELL
NRRDPINKNWDGKTINWHDYQTTLHALACKCSELAKARGHKVFGLQFYGE
CWSGNNALYLFARDGVAENKDCVGIDYQPCDDNSKTECVGKAFRNYIYKI
KEGGKDIDQKVPGNWGDWSQWSPCSKKCAGGTRDRFRECNNPAPKFGGKY
CEGEGEAMEACNEEACQPVCKKQLDIGVILDGSTSVTKKNWLKTLDFVKS
FASEFSVSEQEVHFGVMHFSWRVTVDFKISDSRYWSQEALESKVDTIQYP
YGGTRTDLALDTAYSEFFCKGCTERASKVPKVLLVLTDGKSSYNAKPVVN
ASEPIKKAGVTIIGIGVGQADKTELTEMATDADHVFMLNQYAYLKDKLNS
MLKLACQSDESRRRRSLLKSGR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004586XLOC_004586Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008136TCONS_00008136Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR002035VWF_A
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 181..192
score: 46.8
coord: 163..176
score: 50.77
coord: 200..211
score: 32.37
NoneNo IPR availablePRINTSPR00453VWFADOMAINcoord: 332..340
score: 53.21
coord: 224..241
score: 35.04
coord: 263..277
score: 22.95
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 224..386
e-value: 5.4817E-39
score: 137.808
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 165..217
e-value: 1.9E-14
score: 64.0
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 166..216
e-value: 2.0E-11
score: 43.8
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 161..213
e-value: 8.9E-17
score: 60.6
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 162..217
score: 13.345
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 161..212
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 223..399
e-value: 6.4E-30
score: 115.4
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 214..412
e-value: 9.9E-33
score: 113.2
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 225..395
e-value: 7.2E-36
score: 124.0
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 225..402
score: 25.345
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 215..407

Blast
[Close]
BLAST of TCONS_00008136-protein vs. Swiss-Prot (Human)
Match: CO6A5 (Collagen alpha-5(VI) chain OS=Homo sapiens GN=COL6A5 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.162e-18
Identity = 59/188 (31.38%), Postives = 96/188 (51.06%), Query Frame = 0 
Query:  219 VCKKQLDIGVILDGSTSVTKKNWLKTLDFVKSFASEFSVSEQEVHFGVMHFSWRVTVDFKISDSRYWSQEALESKVDTIQYPYGGTRTDLALDTAYSEFFCKGCTERASKVPKVLLVLTDGKSSYNAKPVVNASEPIKKAGVTIIGIGVGQADKTELTEMATDADHVFMLNQYAYLKDKLNSMLKLAC 406
            V  K+ DI  ++DGS+S+ +K + +   F+      FS+   +V  GV+ +S    V+F I+D  Y +   L   +  I+   GGT T  ALD    +    G  +R SKVP  L+VLTDG S+     VV  ++ ++   +T+  +G+G A+K EL E+A   + V     +  LK   N +++  C
Sbjct:  436 VDTKEADIHFLIDGSSSIQEKQFEQIKRFMLEVTEMFSIGPDKVRVGVVQYSDDTEVEFYITD--YSNDIDLRKAIFNIKQLTGGTYTGKALDYIL-QIIKNGMKDRMSKVPCYLIVLTDGMST---DRVVEPAKRLRAEQITVHAVGIGAANKIELQEIAGKEERVSFGQNFDALKSIKNEVVREIC 617
The following BLAST results are available for this feature:
BLAST of TCONS_00008136-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CO6A56.162e-1831.38Collagen alpha-5(VI) chain OS=Homo sapiens GN=COL6... [more]
back to top