TCONS_00026465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026465
Unique NameTCONS_00026465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026465 ID=TCONS_00026465|Name=TCONS_00026465|organism=Clytia hemisphaerica|type=transcript|length=773bp
GCAATGTTCTGTATACGTTGCAGACGATTTAATAAGTAATCGGGGATCTG
TCCGAATACGACTATGGAGTACGCTATTTTCGATAGCACTATAGCTTTAG
CGAGTGATTTCCGAACTTTAAATGGAGTGAAACGTTGGAAATTACGAAGA
GCTCGAATGGTACCATGACTGGATTTTATAATTTGGTTGATATGGTCGGA
CCAGGATAGATTTTTATCAAAANTGATTTCCGAACTTTAAATGGTGTGAA
ACGTTGGAAATTACGAAGAGCTCGAATGGTACCATGACTGGATTTTATAA
TTTGGTTGATATGGTCGGACCAGGatagatttttatcaaaatgaagaCCA
AGAAGCTTGACGACATCTTTTTGttcaattgatttttttgaacaaGAAAT
AAGATACGAGTAGTCACTACATAATTTGTGGTATGACGCTAGACGTTTGG
TTGAAAAGATGATGTATTGCAGTTTATCAGCATTGAACAAGAGATTATGA
TCAGCTGACCAGTTGGAAAGTGATTCGATATCAATCTCGATTTCCCGGAT
GCATTTAAGTATATCACGAATTTTTGAGTGACGATAAAGTGTTGTGTCAT
CAGCATATTGGATACTGAGAGAGGAGATTTGGTCGGATAATTCGGTAACA
TATAGGTTAAATAAAACTGGACCCAAAATACTGCCTTGAGGGACACCAAA
GTGAATGGGTTGAACGGGTGATCTTTTATCGTTCACTTGCACAAATTGCT
GACGGTTTGTGAGATAGCTTATA
Run BLAST on NCBI

protein sequence of TCONS_00026465-protein

>TCONS_00026465-protein ID=TCONS_00026465-protein|Name=TCONS_00026465-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
ISYLTNRQQFVQVNDKRSPVQPIHFGVPQGSILGPVLFNLYVTELSDQIS
SLSIQYADDTTLYRHSKIRDILKCIREIEIDIESLSNWSADHNLLFNADK
LQYIIFSTKRLASYHKLCSDYSYLISCSKKSIEQKDVVKLLGLHFDKNLS
WSDHINQIIKSSHGTIRALRNFQRFTPFKVRKSXLIKIYPGPTISTKL
Run BLAST on NCBI

transcript from alignment at sc0000572:170663..171435

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026465 ID=TCONS_00026465|Name=TCONS_00026465|organism=Clytia hemisphaerica|type=transcript|length=773bp|location=Sequence derived from alignment at sc0000572:170663..171435 (Clytia hemisphaerica)
TATAAGCTATCTCACAAACCGTCAGCAATTTGTGCAAGTGAACGATAAAA
GATCACCCGTTCAACCCATTCACTTTGGTGTCCCTCAAGGCAGTATTTTG
GGTCCAGTTTTATTTAACCTATATGTTACCGAATTATCCGACCAAATCTC
CTCTCTCAGTATCCAATATGCTGATGACACAACACTTTATCGTCACTCAA
AAATTCGTGATATACTTAAATGCATCCGGGAAATCGAGATTGATATCGAA
TCACTTTCCAACTGGTCAGCTGATCATAATCTCTTGTTCAATGCTGATAA
ACTGCAATACATCATCTTTTCAACCAAACGTCTAGCGTCATACCACAAAT
TATGTAGTGACTACTCGTATCTTATTTCttgttcaaaaaaatcaattgaa
CAAAAAGATGTCGTCAAGCTTCTTGGtcttcattttgataaaaatctatC
CTGGTCCGACCATATCAACCAAATTATAAAATCCAGTCATGGTACCATTC
GAGCTCTTCGTAATTTCCAACGTTTCACACCATTTAAAGTTCGGAAATCA
NTTTTGATAAAAATCTATCCTGGTCCGACCATATCAACCAAATTATAAAA
TCCAGTCATGGTACCATTCGAGCTCTTCGTAATTTCCAACGTTTCACTCC
ATTTAAAGTTCGGAAATCACTCGCTAAAGCTATAGTGCTATCGAAAATAG
CGTACTCCATAGTCGTATTCGGACAGATCCCCGATTACTTATTAAATCGT
CTGCAACGTATACAGAACATTGC

Coding sequence (CDS) from alignment at sc0000572:170663..171435

>TCONS_00026465 ID=TCONS_00026465|Name=TCONS_00026465|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0000572:170663..171435 (Clytia hemisphaerica)
ATAAGCTATCTCACAAACCGTCAGCAATTTGTGCAAGTGAACGATAAAAG
ATCACCCGTTCAACCCATTCACTTTGGTGTCCCTCAAGGCAGTATTTTGG
GTCCAGTTTTATTTAACCTATATGTTACCGAATTATCCGACCAAATCTCC
TCTCTCAGTATCCAATATGCTGATGACACAACACTTTATCGTCACTCAAA
AATTCGTGATATACTTAAATGCATCCGGGAAATCGAGATTGATATCGAAT
CACTTTCCAACTGGTCAGCTGATCATAATCTCTTGTTCAATGCTGATAAA
CTGCAATACATCATCTTTTCAACCAAACGTCTAGCGTCATACCACAAATT
ATGTAGTGACTACTCGTATCTTATTTCttgttcaaaaaaatcaattgaaC
AAAAAGATGTCGTCAAGCTTCTTGGtcttcattttgataaaaatctatCC
TGGTCCGACCATATCAACCAAATTATAAAATCCAGTCATGGTACCATTCG
AGCTCTTCGTAATTTCCAACGTTTCACACCATTTAAAGTTCGGAAATCAN
TTTTGATAAAAATCTATCCTGGTCCGACCATATCAACCAAATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014871XLOC_014871Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026465-proteinTCONS_00026465-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026465-exon-sc0000572-1491911889:170663..171435TCONS_00026465-exon-sc0000572-1491911889:170663..171435Clytia hemisphaericaexon
TCONS_00026465-exon-sc0000572-1510915933:170663..171435TCONS_00026465-exon-sc0000572-1510915933:170663..171435Clytia hemisphaericaexon
TCONS_00026465-exon-sc0000572-1575043694:170663..171435TCONS_00026465-exon-sc0000572-1575043694:170663..171435Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000572supercontigsc0000572:170663..171435 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07655	1.33521	1.63371	1.02791	1.97535	0.775862	1.7365	2.93725	0.879595	0.926586	0.792012	0.933456	0.88857	0.611273	0.870614	0.437308	0.108261	1.11104	1.07951	0.812814	1.0922	1.39586	0.659982	0.802446	1.9819	1.7281	0	0.243688	1.08015	0.446701
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top