TCONS_00007644-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007644-protein
Unique NameTCONS_00007644-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length99

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007644-protein ID=TCONS_00007644-protein|Name=TCONS_00007644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MGXAQRKRHEAFESDLAAQQDRVEQIVAIAQELNTLGYSKVDEINARCKK
VCDGWDNLGDLTTQRSQNLAAAIEIAERLDNLWLEYAKKASPFSNWMXV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004317XLOC_004317Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007644TCONS_00007644Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002017Spectrin_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002017Spectrin repeatPFAMPF00435Spectrincoord: 4..70
e-value: 7.4E-14
score: 52.0
NoneNo IPR availableGENE3D1.20.58.60coord: 3..81
e-value: 1.2E-13
score: 50.7
NoneNo IPR availableCDDcd00176SPECcoord: 4..82
e-value: 4.22488E-12
score: 57.4556
NoneNo IPR availableSUPERFAMILY46966Spectrin repeatcoord: 4..71

Blast
[Close]
BLAST of TCONS_00007644-protein vs. Swiss-Prot (Human)
Match: ACTN1 (Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.944e-34
Identity = 57/91 (62.64%), Postives = 70/91 (76.92%), Query Frame = 0 
Query:    7 KRHEAFESDLAAQQDRVEQIVAIAQELNTLGYSKVDEINARCKKVCDGWDNLGDLTTQRSQNLAAAIEIAERLDNLWLEYAKKASPFSNWM 97
            K+HEAFESDLAA QDRVEQI AIAQELN L Y     +NARC+K+CD WDNLG LT +R + L    ++ E +D L+LEYAK+A+PF+NWM
Sbjct:  435 KKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWM 525
The following BLAST results are available for this feature:
BLAST of TCONS_00007644-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACTN11.944e-3462.64Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2[more]
back to top