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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026387 ID=TCONS_00026387|Name=TCONS_00026387|organism=Clytia hemisphaerica|type=transcript|length=1524bpRun BLAST on NCBI transcript from alignment at sc0000570:97229..114552- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026387 ID=TCONS_00026387|Name=TCONS_00026387|organism=Clytia hemisphaerica|type=transcript|length=17324bp|location=Sequence derived from alignment at sc0000570:97229..114552- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026387 vs. Swiss-Prot (Human)
Match: SIDT1 (SID1 transmembrane family member 1 OS=Homo sapiens GN=SIDT1 PE=2 SV=2) HSP 1 Score: 372.474 bits (955), Expect = 7.217e-119 Identity = 190/367 (51.77%), Postives = 260/367 (70.84%), Query Frame = 3
Query: 3 FNIYYWNLMTVGIFYALPVVQLVLTYQRVTNESGDQDICYYNFFCARPYHILSAFNNVYSNIGYMXXXXXXXXXXMRRDRIAYMHHVKNPDKYQ-KYGLPKHYGIFYAMGWALFMEGVMSGCYHVCPNYSNFQFDTAFMYILGILCSLRLYQARHHDIFINGHFAFAGFAFVIFTSVIGVVYRSEG--FFITFCFFHIMACFYLSLQIYYMGRAKTAL------VLMWHSRGYKICSRPQYPVRFMLLVVFMGINIALSLYGVTNEVKDFATFLLGIIICNGLLYVGFYCIMKLYCGEKIKLFPVIFALASMVTWGIAIKFFVAGLTDWQTTAAQSREGNRKCIIGNFYDDHDLWHFLSACALFFSF 1076
+ IY+WN++T+ +FYALPV+QLV+TYQ V N +G+QDICYYNF CA P +LSAFNN+ SN+G++LLG LF+ V+RRD I + ++ D + +YG+PKH+G+FYAMG AL MEGV+S CYHVCPNYSNFQFDT+FMY++ LC L+LYQ RH DI + + A+A FA VI +V+GVV+ F++ F H++A LS QIYYMGR K L +++++ + CSRP Y R +LLVV +N + +L+G+ +DFA+++LGI ICN LLY+ FY IMKL EK+ P+ +A+ V W A+ FF L+ W+ T A+SRE NR+CI+ +F+DDHD+WHFLSA ALFFSF
Sbjct: 441 YKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRRD-ILHRRALEAKDIFAVEYGIPKHFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDLGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNLSSWEGTPAESREKNRECILLDFFDDHDIWHFLSATALFFSF 806 The following BLAST results are available for this feature:
BLAST of TCONS_00026387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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