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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026382 ID=TCONS_00026382|Name=TCONS_00026382|organism=Clytia hemisphaerica|type=transcript|length=1822bp
ttattggagtgacaaaagggattcaaaagtatacacgcagttgaaattct
gcatttcagagttgaaaaatgttgataaaatatattgcacacttatgaaa
aattcgaaaataatttttttgtgcattaggagtaatgttcaagctctacc
AATCCTtatacctaaataattcaaagaaataaaattatgacggaatattg
ttggatttttcataccaattttgaaatacaggcggcaacgaagctcgctt
caaagagacattGAAAGATAAATGTCCAGTCGTTGATATGTTCATGATAA
AACTTAAAGTACTGTGAAAGCCAATTGtgtatttttctctaaaaatcgaa
acaaaacaaaagatttctGTTAAACAGGGAATAAGATGTTATTCTTCCTT
ATCTTGCAACCTATTCTGGTTAATTCCCAATGGTTTTCTGGCgatgaaaa
acaacaaacaacaacaaatattGAAACAGAAGATGCATCAAAACCTTTTC
CGGCAACAACGTCTGTTGAATGCATATTAGAATGTCATAGAAAGTTGAGG
GAAGGTTATTTTGTTGAAAGGAAAGGACAATGTTTTTGCTTGGAAAGTGA
AGATCAGAAGATATATTCGAATGACGATATTAACAATGGAATATTCTATG
AGGCTGAGGAGAAACTACCATTACGAAGTTGTGCGGAGATTAAAGAAAAA
TGCCCGCATTGTGTCCCTGGATTTTACTCACTTGAGTCCAGCAATGAACA
ATATAATGTGTTTTGCAATTTGACTGCTCATGGTGTCAGCTACCCGACAT
GTAGAGGTGTGAAAGACTATTGTCCAACATTTGGGACAGGTTTTTATAAC
TTTGAATCAACCGATGGCGGGGGCGTTAGGGTGTTTTGCATGCTCACCAC
AAATGGAGCAGTCAGTGATGGTTCTTGTAAAGCAATCAAAGAATTTCGGT
CAGGATTACCATCAGGGTTTTAtatgtttgagatatttggtcAACTTACT
GAAGTCTATTGTGATATGGTAGTCAAAGGAGGTGGTTGGTTGGCCATTGG
AAATGTAACATTGGAAAAAGAAAGCGAGGTAAGAACCATGTTCGAGCATA
TAAAGCCTGGATACCAGATTTCTCAACTCCAAAATATCCGTAACGGTTAT
TTCATGTTGTCAACCCCAGAAGTCAAAGAATTATTTACCAATGGTGGTTA
TACTGAAGTCAGAGTTAATTGTTTTAAACCATCGCATGGTAGAACTCTAC
ATATCATTCTTAAAGGAGATAAGGTTGTAAAATGGATGCGACGAGAATCA
AAGTCAGAATCTCCATGCGATGAAGAAATTCAGTATCTCACCAACGATAC
ATCTAAAATGGCAAATGAGCCATGTGGGAATATTAGAATAGGTGGAAACA
GGAGATCTTTATGGTACGATCATTTGCTTTGGGTGCCTGGCAGAACACAT
ATTCTCTTTATGGACACAACTGAAAAGACAAGAGTAGAATGTGATGACTT
CTATAAACAAGAAAATTACCACGAGCCTGGATATTGGTTCTATTTTGTTC
GCTAATAAGGAAGAACATCAAAGTGTTTTGGTTAATACACTTTTTCAACC
CTAGCCGTCCGTGCGGGTGGGCATTTTTTtatccgttttaccaccctaaa
accgtcccagtctttctTTCGCACCTATAGGCAATAGAAGAAGGtggtca
aaaaaggattggatcgagtttaacTGTAAACCATTCCTgcgtggcaattg
gcggctacgatcgaaaaggtgtattagtaCTAGAGAATTAAATGtctgtt
ttataagcatataaaaatccga Run BLAST on NCBI transcript from alignment at sc0000570:12231..16436- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026382 ID=TCONS_00026382|Name=TCONS_00026382|organism=Clytia hemisphaerica|type=transcript|length=4206bp|location=Sequence derived from alignment at sc0000570:12231..16436- (Clytia hemisphaerica)
TTATTGGAGTGACAAAAGGGATTCAAAAGTATACACGCAGTTGAAATTCT
GCATTTCAGAGTTGAAAAATGTTGATAAAATATATTGCACACTTATGAAA
AATTCGAAAATAATTTTTTTGTGCATTAGGAGTAATGTTCAAGCTCTACC
AATCCTTATACCTAAATAATTCAAAGAAATAAAATTATGACGGAATATTG
TTGGATTTTTCATACCAATTTTGAAATACAGGCGGCAACGAAGCTCGCTT
CAAAGAGACATTGAAAGATAAATGTCCAGTCGTTGATATGTTCATGATAA
AACTTAAAGTACTGTGAAAGCCAATTGTGTATTTTTCTCTAAAAATCGAA
ACAAAACAAAAGATTTCTGTTAAACAGGGAATAAGATGTTATTCTTCCTT
ATCTTGCAACCTATTCTGGTTAATTCCCAATGGTTTTCTGGCGATGAAAA
ACAACAAACAACAACAAATATTGAAACAGAAGATGCATCAAAACCTTTTC
CGGCAACAACGTCTGTTGAATGCATATTAGAATGTCATAGAAAGTTGAGG
GAAGGTTATTTTGTTGAAAGGAAAGGACAATGTTTTTGCTTGGAAAGTGA
AGATCAGAAGATATATTCGAATGACGATATTAACAATGGAATATTCTATG
AGGCTGAGGAGGTAATAAAATTCAAATTGTAAAGATTTTTTTTTAAAGCA
TTTATTTTGTTTTTTATTGTTGTCTTATCGAATCTTGTCTTGCACAAAAT
TCTGAGTATCATAACTCTATGAAAAACTTTCTGCAATAAAAAGACTTTCC
GTTTTCTTCCTAGCTGGTGAACACCTCTGTGTAACAGATCCACTAGAAAT
GGCCAAATTTTGTCCCCGGTGGAAAAAATACACTTTAATTTCAGCCCTAC
TGAGAAATTGACTTTGATTTCATCCCATTTGGAAATTCAATGTAAAAATT
TGTGTTCTAAAACCATCCTAACTGGATTTCTTTCTTGAAACAACAACTAG
AACTTCTACTCCCGCCGCTGCAATCACCCTATGCTTTGGAAAAGTTTTAT
CGGGGCTTTTAGACAGGGGTAAGGTGTGCATGAAGTTTTTTCAATATCTT
TACAACGTTATTTAAATGTCAAAAGATGTTGGTTTACTTGAAATTGATCT
TTCTCGATGCACCTTTTCAACTGCAATTGGCAGCTACGGTCGAAAAGGTG
TATCTCTTAAGGTCACACATCTTGTTGAGACCATTAGTGAAGTATTTTGA
AGTATTTTCAACAGAGATAACTGTTTATAGAAAGTTTTAGAATACCTCTT
TCTCACAGACCCAGTAAAATCTTTTCAGCCAGTAGGGATAAAATAAACGG
ACTGAAACTCGATGGGGCTCTATATTTCCATATTTTTTAATGCCTGGGAT
TCATATTCTTTTGTTTTCAAGTCAGAAAATTGGCAATAAAATTGAAGTAT
AATAGGAAAATTTCAACTTTTTACCCCCTGAAAATCGAAATTTGTTCAAA
ATTGGTCAAATTAGTCCCGCTAAAGCCTAAGGGTCGTAAAATTCCCAAAA
TTTTCCTTTGTTTTCTCCGTTTTAGTCCCGGTAAGGGTCCAAAGTTCGAA
AGTCGGGCGGCACCCCCCGTCAGCTCGCAACCCTAGTACCCCCCTCCCCC
GGGGTGAGAAAGGGGTGTATTAGAGTGGAAGAAGAAGCTTTCCAAAGAAT
TTATAATATCGTATATAGGCACATTTTTAAAATCTAATATACTTAATTCA
TTTCTGTATTATTCTAGAAACTACCATTACGAAGTTGTGCGGAGATTAAA
GAAAAATGCCCGCATTGTGTCCCTGGATTTTACTCACTTGAGTCCAGCAA
TGAACAATATAATGTGTTTTGCAATTTGACTGCTCATGGTGTCAGCTACC
CGACATGTAGAGGTGTGAAAGACTATTGTCCAACATTTGGGACAGGTTTT
TATAACTTTGAATCAACCGATGGCGGGGGCGTTAGGGTGTTTTGCATGCT
CACCACAAATGGAGCAGTCAGTGATGGTTCTTGTAAAGCAATCAAAGAAT
TTCGGTCAGGATTACCATCAGGGTTTTATATGTTTGAGATATTTGGTCAA
CTTACTGAAGTCTATTGTGATATGGTAGTCAAAGGAGGTGAGTAGATAGA
GTTTTTTTAGTTCAGTTGTTGTTTAAGACAATGTATTTCAATGTTCATTT
TCTAAACAATGCCTAATACATCAGTCTCCAGAACTAGAAAATTCTCGAAA
AAAATCAAGTTCCCCGTGGATATTTCGTCAACTTACTGAAGTCTATTGTG
ATATGGTAGTCGAAGGAGTTTAGTAGATACTCTAAGGTCCCAAATAGTAG
GGGGCTCCGAAGAAAAGTGGGGGTGGTCCGAATGAACACGCGATAAAACC
TTTTCATAAAAACCCAGGAAATATCAATAAGACACGCAAGGATGGGCTTT
ACCAACTAAACATCCAAGTTTAAAAAATTGCACAAAATTCTCACAAAATG
GTAAAGATGAAAAACAGAAAACTAGAAAATTAATAAACGGGCTGCATTGG
GTCTTAATAAGAATAGGGGTGTCCGAAAATTTATAACCGGGTGGGGATGT
TTATTCGGGATCTTTGAGTAGGGTTTAGTTCAATAGTTGTTTAATACAAT
AATATCAATGTTGATGAAACTCGAGCCTGTATTACTCGAATGTTTCCTTA
ATTCCGACAGGTTTGCTTGTGCCTCATAAAACAAGTGGTACTGTGTCCAT
AACTCGAAAATTCCATAACTCGAACAAATTAATATTTCCCGTGCGTCAGT
GTTTGAGTGTAGAGGCTTCATTTTGTGATTTGGATTTCTTTATGGATATC
AAACTCTTATCACATGTCTCAGCGGTCTTGGTTACTAGGTTTGAGAGTCT
TATTCCTCGTGCGCAACAATAATCTGTTACCCTAAGAGAAGAAGTTTTGG
CGAGAAGAAATTTTGGTGCAATTAGGCGGAATTTATTTTGGCAATTCAAT
AAATATCTTGAATTCGGCGAAAATTAATTTTGGCGAAAGACCAATTTTTG
TTCAATATCTTAGCTGAAAAAAGAGTATAAAAGGCGTTTTTAGGAGAAAC
TAAATTGAAAGAAAATTAAATTTCGCGAGAATTTATTTTGGCGAATAACC
TATAAATTTAAATTTCTTTTCACCAAAATTTCTTCCCTTAAGGTATTATC
TTATTTTCTCTTTCTGATATCAAGGTGGATGGTTGGCCATTGGAAATGTA
ACGTTGGAAAAAGAAAGCGAGGTACGAACCATGTTCGAGCATATAAAGCC
TGGATACCAGATTTCTCAACTGCAAAACATCCGTAACGGTTATTTCATGT
TATCAACCCCAGAAGTCAAAGAATTGNCTTAAGGTATTGTCTTATTTTCT
CTTTCTGATATCAAGGTGGTTGGTTGGCCATTGGAAATGTAACATTGGAA
AAAGAAAGCGAGGTAAGAACCATGTTCGAGCATATAAAGCCTGGATACCA
GATTTCTCAACTCCAAAATATCCGTAACGGTTATTTCATGTTGTCAACCC
CAGAAGTCAAAGAATTATTTACCAATGGTGGTTATACTGAAGTCAGAGTT
AATTGTTTTAAACCATCGCATGGTAGAACTCTACATATCATTCTTAAAGG
AGATAAGGTTGTAAAATGGATGCGACGAGAATCAAAGTCAGAATCTCCAT
GCGATGAAGAAATTCAGTATCTCACCAACGATACATCTAAAATGGCAAAT
GAGCCATGTGGGAATATTAGAATAGGTGGAAACAGGAGATCTTTATGGTA
CGATCATTTGCTTTGGGTGCCTGGCAGAACACATATTCTCTTTATGGACA
CAACTGAAAAGACAAGAGTAGAATGTGATGACTTCTATAAACAAGAAAAT
TACCACGAGCCTGGATATTGGTTCTATTTTGTTCGCTAATAAGGAAGAAC
ATCAAAGTGTTTTGGTTAATACACTTTTTCAACCCTAGCCGTCCGTGCGG
GTGGGCATTTTTTTATCCGTTTTACCACCCTAAAACCGTCCCAGTCTTTC
TTTCGCACCTATAGGCAATAGAAGAAGGTGGTCAAAAAAGGATTGGATCG
AGTTTAACTGTAAACCATTCCTGCGTGGCAATTGGCGGCTACGATCGAAA
AGGTGTATTAGTACTAGAGAATTAAATGTCTGTTTTATAAGCATATAAAA
ATCCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026382-exon-sc0000570-1575043694:15776..16436 | TCONS_00026382-exon-sc0000570-1575043694:15776..16436 | Clytia hemisphaerica | exon |
| TCONS_00026382-exon-sc0000570-1575043694:14300..14669 | TCONS_00026382-exon-sc0000570-1575043694:14300..14669 | Clytia hemisphaerica | exon |
| TCONS_00026382-exon-sc0000570-1575043694:12231..13021 | TCONS_00026382-exon-sc0000570-1575043694:12231..13021 | Clytia hemisphaerica | exon |
| TCONS_00026382-exon-sc0000570-1510915933:15776..16436 | TCONS_00026382-exon-sc0000570-1510915933:15776..16436 | Clytia hemisphaerica | exon |
| TCONS_00026382-exon-sc0000570-1510915933:14300..14669 | TCONS_00026382-exon-sc0000570-1510915933:14300..14669 | Clytia hemisphaerica | exon |
| TCONS_00026382-exon-sc0000570-1510915933:12231..13021 | TCONS_00026382-exon-sc0000570-1510915933:12231..13021 | Clytia hemisphaerica | exon |
| TCONS_00026382-exon-sc0000570-1491911889:15776..16436 | TCONS_00026382-exon-sc0000570-1491911889:15776..16436 | Clytia hemisphaerica | exon |
| TCONS_00026382-exon-sc0000570-1491911889:14300..14669 | TCONS_00026382-exon-sc0000570-1491911889:14300..14669 | Clytia hemisphaerica | exon |
| TCONS_00026382-exon-sc0000570-1491911889:12231..13021 | TCONS_00026382-exon-sc0000570-1491911889:12231..13021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000570 | supercontig | sc0000570:12231..16436 - |
Blast
The following BLAST results are available for this feature:
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