TCONS_00026318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026318
Unique NameTCONS_00026318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026318 ID=TCONS_00026318|Name=TCONS_00026318|organism=Clytia hemisphaerica|type=transcript|length=853bp
TATGTCAATGGAAACACCTGCCATGACTTCTTTTGCTACAAATTCAACAA
TTTCTGGTAACAATCGAGTTTTAACCTCAAAACATAGTGGaGCAAGATCA
GTGCCACGATCAATAAGTACACCTGGAGCAGGCAAAAACAACATGCTTTT
GATAGCTATTGCTGAAGGAAGAGGGCTAGCTAAAGGAGAAATTGGACTTA
CAAGTTTAGACTTCAAAGCTTCTGAAATGGTTCTTTCACAGTTTTCAGAT
AATGCAACTTATGTGAAAGTATTGACCAAAATTCAAGTGCTGCAACCAAA
TGAGATAATTATGCCTACAACGGCTTGTGAAAACGGGAATATGTCTCCAT
TATTTGAAGCTATATCTCAACAAAATCCACATATTAATTTAACAACTGTC
CAAcgaaaatatttcaatgaaacTAAAGGCTTAGAATGTATCAAGGATGT
ATGTGTTCCAGAATTTCAAACAGTTGAAATGGATGTTCAGAACAAATATT
ATTGCCTGGCTACTACTGCAGCGTTAGTGAAGTATACAGAGTTTGTTTAC
AACATGGTATTAGCTGCCAAATCATTGAAAGTTCTTTTCAAAGGTGGTGA
GAAGACAATGTTGATAGATGTACTTGAAAGGTGTTCTGTGCCTCTTGGCA
CTGTATCAAGTCCAATGTTATATCAAGCATGAAGAAGGACGAGGACCGAT
GTACAAGCTAAGTGCTGTTAAAGACACCTTCTTGGAAAGATATGGTGTCT
CTTGGGATAGACCGTCATTTGGTCAAAACCTTATTGGAAGACATCGTCAA
TATCCTGTCAAAAGAACCCTCATCCAATTCGAAAACCTCCCAGCTAGTGT
CTG
Run BLAST on NCBI

transcript from alignment at sc0000569:27..10792-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026318 ID=TCONS_00026318|Name=TCONS_00026318|organism=Clytia hemisphaerica|type=transcript|length=10766bp|location=Sequence derived from alignment at sc0000569:27..10792- (Clytia hemisphaerica)
TATGTCAATGGAAACACCTGCCATGACTTCTTTTGCTACAAATTCAACAA
TTTCTGGTAACAATCGAGTTTTAACCTCAAAACATAGTGGGTAAGATTTC
ATATCTGATCTTTACATTTTTTAACTTATTTCTTAAGACAATCCAATAGG
AAATTTTGCGCTGTTTTCAATCCCAGTTTAGCTGTTTACGTCCAAAATGA
TATAGAGTAAGCTGTAGACCTGAACGTACTATTTTGCTTTTTTGTTAAAG
TTTTTAATTTAAGGGATAACTCTCATTCCTTGCCACTGGACTGACAAAAT
TATTAACTCGGATTGTATCAATACACCTTTTCGACCGTAGCCGCAAATTG
CCGTGCGGGCATTTTTTACCACCCTAAAACCATCCCAGTCTTTTTTTCGC
ACTTAAAGGCAATAAAAAAAAGTGTAAAAAAAGGATTGAATCGAGTTTAG
GGTGGCAAATTAAATAATAAAGTGGCACGCGCTTGACCGCGCGACTACGG
TCGAAAAGGTTTATATTTAATAACTATAAGATCACAGATATATTTGTAAT
GATTTGGCTTGAAGTTAAGAACTGTTTTAGAGGCTGCTCTTTACAGATAA
CTACTTATCGGTTCGATAGGCTTTAGTATGAATTTCTTCGGATTATTCTA
GCTCACTAAAGTCGAGTCGCTGAGTAACTTAAAAGTGACTACCTATCTGT
TCGATAGGCTTTAATATGAATTTCTTCGGATTATCGTAGCTCACTAAAGT
CGAGTCTCTGAGTGACTTAAAAGCTATCAAAGTATGGTTACCCTGATCGA
TAGTTATCAATTACTCTCTAAGACTATCAAAAAGGTGTAATATTGGTAGT
AAAAATTGGTCACTGTATGAGTTTTTCTTTTCATTTCTTCAGAGCAAGAT
CAGTGCCACGATCAATAAGTACACCTGGAGCAGGCAAAAACAACATGCTT
TTGATAGGTAGAAAAGCTTTCATAATTACAATTAGGTGGATTAAGTGATG
TCTGTCTCAAAGATAATGCGGACACTTTTCTGTGATGTTGGTCATTTTTG
ATCACTTTAGGCCTACTTCAAAGGGCTGTAACTTTTCATCCAAGTAAGAT
ACTAAAAATCTGAACACATGTTTGAAATAAGTAAGGCTCAAATATTCTAA
AAATCTTCATGTCATTATTTTTAAATCAGTAGAACAAATCTTAATTTTTT
CATCTTCATTTTTCAATTTTTCTTAAATCTTTCATCCTTTAGATTATTAT
CCTTGGAAATACCTTTCCAATGGTGCATAACTTTATAACTCAGCATCCAA
GCTTGTACATAACGTTGATTTATCGTTTGAACAATGTTCATAACGTCCAT
ATAACGTCTGGTGAACGTTGAATCAACGTTGTGTGTCAGCTGGGATAAAA
AGGTGCTGAGAAAAGGTCAAATTAAAGTATTCACGTACTTTTGAGACAGA
CTCTAATTTGTATGATTTATTCTGTAATTCTAAGAAACCAATGAACAAAG
CTGGTTCAATATTGTTTCCTTTAACTTTTTGACAGCATCTGTGTTTTCTC
TATAGTGTATTTAATTATAAACCTCTACTTACTTGAAAAATCGGCCAAGC
ACTCGTGGAAATATTTCTTTCTCTTTTGTAGCTATTGCTGAAGGAAGAGG
GCTAGCTAAAGGAGAAATTGGACTTACAAGTTTAGACTTCAAAGCTTCTG
AAATGGTTCTTTCACAGGTATGAAAATATTGCATCATTAATATTGATATT
ATATTGATATTATTTANTTTGTCAAGAATAACTCTATCGTTCGCCGTCAT
AGTGTGTGTTCTCTAAAGGTCCAAAAGCAAATGTCTAATTTTTTGAAAAT
AACAATTTTAGAGCTAATCAAATTATCAATTTTAGCAGCTATCTTTGGGA
ATGAGATCTATTGGAAGCCAAGGCTACTGGGCTAAAATCAGACTGACAAG
TAAAAAAATCTCTCCTTTTAGGTATGTCAATGGAAACACCTGCCATGACT
TCTTTTGCTACAAATTCAACAATTTCTGGTAACAATCGAGTTTTAACCTC
AAAACATAGTGGGTAAGATTTCATATCTGATCTTTACATTTTTTAACTTA
TTTCTTAAGACAATCCAATAGGAAATTTTGCGCTGTTTTCAATCCCAGTT
TAGCTGTTTACGTCCAAAATGATATAGAGTAAGCTGTAGACCTGAACGTA
CTATTTTGCTTTTTTGTTAAAGTTTTTAATTTAAGGGATAACTCTCATTC
CTTGCCACTGGACTGACAAAATTATTAACTCGGATTGTATCAATACACCT
TTTCGACCGTAGCCGCAAATTGCCGTGCGGGCATTTTTTACCACCCTAAA
ACCATCCCAGTCTTTTTTTCGCACTTAAAGGCAATAGAAAAAAGTTAGTG
AATCGAGTTTAGGGTGGCAAATTAAAATATAATAAAGTGGCACGCGCTTG
ACCGCGCGACTACGGTCGAAAAGGTGTATATTTAATAACTATAAGATCAC
AGATATATTTGTAATGATTTGGCTTGAAGTTAAGAACTGTTTTAGAGGCT
GCTCTTTACAGATAACTACTTATCGGTTCGATAGGCTTTAGTATGAATTT
CTTCGGATTATTCTAGCTCACTAAAGTCGAGTCGCTGAGTAACTTAAAAG
TGACTACCTATCTGTTCGATAGGCTTTAATATGAATTTCTTCGGATTATC
GTAGCTCACTAAAGTCGAGTCTCTGAGTGACTTAAAAGCTATCAAAGTAT
GGTTACCCTGATCGATAGTTATAAATTACTTTCTAAGACTATCAAAAAGG
TGTGATGTTGGCAGAGTGGGTCACTGTAGAGTTTTCTCTTTTCATTTCTT
CAGAGCAAGATCTGTGCCACGATCAATAAGTACACCTGGAGCAGGCAAAA
ACAACATGCTTTTGATAGGTAGAAAAGCTTTCATAATTACAATTAGGTGG
ATTAAGTGATGTCTGTCTCAAAGATAATGTGGACACTTTTCTGTGATGTT
GGTCATTTTTGTTGTTCTTGGTCATTTTTGATCACTTTAGGCCTACTTCA
AAGGGCTGTAACTTTTCATCCAAGTAAGATACTAAAAATCTGAACACATG
TTTGAAATAAGTAAGGCTCAAATATTCTAAAAATCTTCATGTCATTATTT
TTAAATCAGTAGAACAAATCTTAATTTTTTCATCTTCATTTTTCAATTTT
TCTTAAATCTTTCATCCTTTAGATTATTATCCTTGGAAATACCTTTCCAA
TGGTGCATAGCTTTATAACTCAGCATCCAAGCTTGTACATAACGTTGATT
TATCGTTTGACCAATGTTCATAACGTCCATATAACGTCAGGTGAACGTTG
AATCAACGTTGTGTGTCAGCTGGGATAAAAAGGTGCTGAGAAAAGTTCAA
ACTAAAGTTTTCACGTACTTTTGAGACAGACTTTATAAGTTTGTATGATT
TATTCTGTAATTCTAAGAAACCAATGAACAAAGCTGGTTCAATATTGTTT
CCTTTAACTTTTTGACAGCATCTGTGTTTTCTTTATAGTGTATTTAATTA
TAAGCCTCTACTTACTTGAAAAATCGGCCAAGCACTCGTGGAAATATTTC
TTTCTCTTTTGTAGCTATTGCTGAAGGAAGAGGGCTAGCTAAAGGAGAAA
TTGGACTTACAAGTTTAGACTTCAAAGCTTCTGAAATGGTTCTTTCACAG
GTATGAAAATATTGCATCATTAATATTGATATTATATTGATATTATTTAG
CTCGACGTAAAGTTAGACAAAATCCATAATTTACAAATAAACACCCCTTC
TCACAGACCCACTGGAACCTTTTCCCGCTGGAAAAATTCAATTGACCAAA
ATATACTGGCCAGTGAAAAAATTATATTCTGATTTTTGTTCCCACTGAAA
ATAATCAGATAATCAAATCCTCACTGAAAAATCTTTTGCTTTTCTTTCCG
ATTTATTGAGCAGCAATCTGGCTTCATACTATTTAAAATCTATTTTACGT
TGGGCTCTGTAATCTTGTAAAAAGCAACAGCTACATTCGGCTAATTCGGC
TAAAATTTTCTTTACAGTTTTCAGATAATGCAACTTATGTGAAAGTATTG
ACCAAAATTCAAGTGCTGCAACCAAATGAGGTAGATTGAGTTTTTCTTTA
TTTCATGATATATACTATCTTCTTCACCCATAATGCCTATTCAGAACCAA
AATATTACCAAAATAGTTCTAGTGCTTGAATTTCTAATTGGATGAATTTT
TGACAAAACTATTCCATTTCTTTTCTTAGATAATTATGCCTACAACGGCT
TGTGAAAACGGGAATATGTCTCCATTATTTGAAGCTATATCTCAACAAAA
TCCACATATTAATTTAACAACTGTCCAACGAAAATATTTCAATGAAACTA
AAGGTTTGTAAAGCAAAGTCATTTCTTCAATTTGCTGAGCGGTGTCTGAC
TTTTATGAACTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAGCAACAGC
TACATTCGGCTAATTCGGCTAAAATTTTCTTTACAGTTTTCAGATAATGC
AACTTATGTGAAAGTATTGACCAAAATTCAAGTGCTGCAACCAAATGAGG
TAGATTGAGTTTTTCTTTATTTCATGATATATACTATCTTCTTCACCCAT
AATGCCTATTCAGAACCAAAATATTACCAAAATAGTTCTAGTGCTTGAAT
TTCTAATTGGATGAATTTTTGACAAAACTATTCCATTTCTTTTCTTAGAT
AATTATGCCTACAACGGCTTGTGAAAACGGGAATATGTCTCCATTATTTG
AAGCTATATCTCAACAAAATCCACATATTAATTTAACAACTGTCCAACGA
AAATATTTCAATGAAACTAAAGGTTTGTAAAGCAAAGTCATTTCTTCAAT
TTGCTGAGCGGTGTCTGACTTTTATGAACTGTGCTTTTTATTCCTTTTGG
CACTAAATAAATAAATGGACAAAAGCGATATACGGTTCCAAGGCTTTAAC
ATGTTCAATTTTAAATATGTACGATCAATTTTATGTTGACCTTTTGTTTA
ATGTTTTTTGAGGTAAAAATTCCTACTGTTTCAATATATTTTATCATAAT
TCCTCTCTTAATTTTGATTTTTTCTTTGAAGGCTTAGAATGTATCAAGGA
TGTATGTGTTCCAGAATTTCAAACAGTTGAAATGGATGTTCAGAACAAGT
AAAATTTTCTATTATTCTTATGAGGGCATAGTATTTTCATTAACATTCAG
TGTCCCGAAAAAAAATAAAAAGAAATACCTTATTACACGGAATGTAATTA
ACACGAATTAAGAAATTTCGTGTTAATTAAAACCCCTTTAATTAAAACCA
GCCGTGGTGTCCTTGAAAAAGCAAATAAAATTTGTGTTAATTTTTTGCTT
GTTAATTCCAAGGCCGTTGAATACTTGTCTAGTAATATTCGTGTAATAAT
GTAGTTTGACCCATAAGGCCGATAACGTTGCGCCTGATTCAAACTTGATA
CTTGAAATGATACGAAGGAGAATCTTTTGAGAGTACCCATAAAGAAAGCT
CAATCAGTCATTGGCATGTATATCTCAAATTCTGAATAATGTTTGCAAAT
AATGGCTGAAAACTAGGCTTGATTATTAAACAAATAGTTTGAACAAGGAT
TGACGTAAAATAAAGTTTGTTTCCTTATCTTTTTAGATATTATTGCCTGG
CTACTACTGCAGTAAGGATATTTCTTATGGAATTCTTTTTTCTATTCCGG
GTTAGAGTTTAGGATCCAGTATCTTAATCCATAGCCCAAAACATTTTACA
TATTTGAAAGTTGTAAACACCGTGACCCCTAAAATTAATGTACCAACTTT
ATAAAAACAATCCACTATTCCTGGGTTCGGTATCTGGATTCTGTTCCCCT
GCTAATTTTTCTCTAGATGAAATAAACTTTTCAGCCTCATTTGATGGGAA
TATTCGAAATGGAATAATTCGAAATATTTCTAAAATACGCCCCCATGCAA
GTTTAGGTTGTAAACACTTGTTAAGACTCTACGCTTCACATCAGATAATT
TTAAAACGAACGGATTTTATAGTCCGACATGTTTAATTGTTTAAAGACAC
TTTATTTTCATTGTTTCTGATGGTGAAAAGGAAAAGGTTTGTACTAGAAA
AGTCGTCAATGGTTCATAGGAAAATGGGCGGGACTATAAAAAACCTATTT
ATTCTTGTAAATTGATCGAGCTTCTTCTCTTTTGTTTTTCAGGCGTTAGT
GAAGTATACAGAGTTTGTTTACAACATGGTATTAGCTGCCAAATCATTGA
AAGTTCTTTTCAAAGGTGGTGAGAAGACAATGTTGATAGGTAAGTTTTCT
TTAATTGCAGTAGGGAGTGTCCCAAAGGTTCGATAGCTTCTTACCAAAAG
GTAATGAAAGTGCTACTCTCTCCCTGGATCGCCCCACTTACCCTTGATCC
TTCTTTTTAATTGGCTTTCACTAAACAGATAGACATGAAGTCTTTGAGGT
CCTTGGTTTTACCGACCATGGGTTGAACCCATGACCTTTCATATCATACT
CCATTTTAGAGTGGTCTGATCCAGAGTACTATAATTTCTAAAAAAATATT
TAAGAGGATGAAGCTGAAAAACGAAGAAATGAACTTTTTTTAAGACTCCT
GGTTCCAGCAAAATAGTTATTTTTCCATTAAGTTCTTGCATCGAGCTAGC
TGGGAGACCCGACTTCTCTGTCTATGTGGTTTCAAAAAAATATCAAAGTA
TAGACAGTAGTAGCCGGGAATTATACAAGATGCAAGAATTAATCGCANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTGCAGCCGTCATTACGGCTGTTTTATTTCGTT
TATATTTGTCACTTTTCTATATAGACTGTAATGGCCTGTTCCATTTGATA
TACATACAGGTGGTAAAACAAACCTTTCCAAGCCAAAAATTTCTTGAAAA
TAATATATTTAGATACCCCCTGGTGGAGTAGTGGTATGGTGGTCATCGCT
CTTGACTCCCGTCTGAGAGGCCCGAGTTCGATGCTCACCATGGTACTTTG
ATTCACTTGGCAAGTGAATTTATCTTCGCCCGGGTCAACCCATGCCATGT
GAGAGGAATTGGGTACCACTACTCTGATACAAGAGTGTGGGTAGATGTGC
CGTGCATTGTGACGTGCCGCGACACTTGTTACAGGTTCGAGTGTCAAGGT
ATACGCCAAGACTCGGCAGCTCGCACCTGTAGAGTCGCAATGCGTGGCAG
CGCAGTGTTTCCTACTCTCTCGTAGGTAAGAAACATTCCGAGATATGGGA
GGGCTTAATATCAATCAAAACAATCCCCCCTGGAAAATGGTAAAATTTGA
AAATAAAAAGACCTTGGAAAAATTCTTCTTCGTACCTTAGAGTGGGAGTG
GACAAACTAAAACCAGTTTTATACCCCCTGGAGGAATTTGAATATTATTT
ACCTCCTGGAAAATTAAATTAGGTCCCTGGAAATATAAACTTTTCGTTTC
ACCCCTGGTAAAATAAAAATAATTTTCCTTAGACCACTCGGATCACTCCT
TGGGAAATTTCATCAACCCCATGTATAAATATTAAACGGAATGTTCCTGT
CTAAAGCGGGCTATCTGTCATTTTCTTGGATCTTCTGAACGAAGAAAACA
ATGTTTATAGTTTATGTTTTCTAGATATTAGAAGCCTATTTCGATTCCAT
CTATGACTCCATGTACATGTTTTTTTTATAAGAACAAATTATATAAGAAC
ATAAGGCTTTGCTGGCCAAAATGTTAAGAACAAGTTAAAAACATTTTAAG
GCTCTGCGGACTCAAAACACCCTATTTCTTCAGATTTCTCTGGAAAATGG
TCAAAATAAGAACATGTTAAAGAACATTTTTAGGCTTAAAACTCAAATAG
TTAGGAACATCAGAAGGCTTCAAAAATTTTGGATGTTCTAATAAAAAAAA
CATGTATCGGTCACGTACCATTTTCCCACTATTTTCCATTTTTGTTGTCT
TTTGTAATACTTTTAATCACAAGATAAAGAGTGCTCAACCTTAATAAGTG
GATCACTACAGTGACAGTAGAAAAATATCATGTACTAAAAAAAAAACATG
CATCCTATCCTAATGTTTGTACCTCATTTACGCGATGAGCAGATGCCAAT
GCAGCAAAATGGGGTTTTCCAGAAAAATATTTAACCCCAACTGTTGAGGA
TATTGATTTTGCCAAGTATCGAACCCTCTGGATATCCACTCTTAAAAATT
AGCTCAACTCCCTGGATATTCTCTCTTATAAAGATGCTTACCCCTGGATA
TCCACTCCTTCGTAGATATTTAACCCCCTGGATATCCACTTTTGAACAAA
ATTCGTTAACCCCCTGGATATCCGATATCCTCGACAGGGGGGAACGGACT
ATTTCTGGAATAGCTCGATATCCTATGGTTTAAAAAGCCGGACTCATCAA
AACATTATTCGGAGCTTTTTTCCATTTGTGGTTTGTGAATAGCAACTTTT
AGTCTTAAGGGAACAAAAAATGCCGCAAAATACATTCGGTGCTAAATTGA
CAGTTTTCTCATTCAGTCCCTCGTGTGCAGGTCAAGCCACACCTGTTGCT
AATCACGAGACAAGAAGAAAAAAAAAACTGTTTCTAAATCTAAGTTTTTA
ATCAAGCACACTTCCAAATAGTTGCACATGGAGATAGAAGAAGTAATTAA
CAATTAATAACAATTAAATATTCGTAAAATTTACTAATTACTTAGTTTCG
GCATTTATCACAACTTGTATAAATAGGGATAAAAAATTCAAGAGTTCACC
ATCAAACGTTTTCAACCTTCATCAAGTGAAGTGGTTTGGCGAACAAGAAA
AATCTTCAGATTACAATTTAGAACGTAAGTCGTACTGCCAGTTAGTGATT
TAGTTAACCTTTCAAAACATTTAAAATGTCCCTGTTTCAAGTAAACGCGC
CTCCAAGAAAGAAGGCGTTCATTATTCAAAGAGGGGCGTTTATCGAAGAG
GTGCATTAAAAAGGAGGCGTTCATTCGCAGGGGGTATTTATTCAGAGTAA
TGCGATATTTCATACATAGTAAACCAGCGTGTTTTTTTGCGACCCTAATA
CTAAATCCTAATCGTTTTCTTTCTTTATAGATGTACTTGAAAGGTGTTCT
GTGCCTCTTGGCACTGTATCAAGTCCAATGTTATATCAAGCATGAAGAAG
GACGAGGACCGATGTACAAGCTAAGTGCTGTTAAAGACACCTTCTTGGAA
AGATATGGTGTCTCTTGGGATAGACCGTCATTTGGTCAAAACCTTATTGG
AAGACATCGTCAATATCCTGTCAAAAGAACCCTCATCCAATTCGAAAACC
TCCCAGCTAGTGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014790XLOC_014790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026318-exon-sc0000569-1575043694:10703..10792TCONS_00026318-exon-sc0000569-1575043694:10703..10792Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1575043694:9836..9900TCONS_00026318-exon-sc0000569-1575043694:9836..9900Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1575043694:9076..9161TCONS_00026318-exon-sc0000569-1575043694:9076..9161Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1575043694:6663..6725TCONS_00026318-exon-sc0000569-1575043694:6663..6725Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1575043694:5521..5644TCONS_00026318-exon-sc0000569-1575043694:5521..5644Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1575043694:5195..5261TCONS_00026318-exon-sc0000569-1575043694:5195..5261Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1575043694:4682..4706TCONS_00026318-exon-sc0000569-1575043694:4682..4706Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1575043694:4054..4150TCONS_00026318-exon-sc0000569-1575043694:4054..4150Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1575043694:27..262TCONS_00026318-exon-sc0000569-1575043694:27..262Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1510915933:10703..10792TCONS_00026318-exon-sc0000569-1510915933:10703..10792Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1510915933:9836..9900TCONS_00026318-exon-sc0000569-1510915933:9836..9900Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1510915933:9076..9161TCONS_00026318-exon-sc0000569-1510915933:9076..9161Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1510915933:6663..6725TCONS_00026318-exon-sc0000569-1510915933:6663..6725Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1510915933:5521..5644TCONS_00026318-exon-sc0000569-1510915933:5521..5644Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1510915933:5195..5261TCONS_00026318-exon-sc0000569-1510915933:5195..5261Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1510915933:4682..4706TCONS_00026318-exon-sc0000569-1510915933:4682..4706Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1510915933:4054..4150TCONS_00026318-exon-sc0000569-1510915933:4054..4150Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1510915933:27..262TCONS_00026318-exon-sc0000569-1510915933:27..262Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1491911889:10703..10792TCONS_00026318-exon-sc0000569-1491911889:10703..10792Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1491911889:9836..9900TCONS_00026318-exon-sc0000569-1491911889:9836..9900Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1491911889:9076..9161TCONS_00026318-exon-sc0000569-1491911889:9076..9161Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1491911889:6663..6725TCONS_00026318-exon-sc0000569-1491911889:6663..6725Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1491911889:5521..5644TCONS_00026318-exon-sc0000569-1491911889:5521..5644Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1491911889:5195..5261TCONS_00026318-exon-sc0000569-1491911889:5195..5261Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1491911889:4682..4706TCONS_00026318-exon-sc0000569-1491911889:4682..4706Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1491911889:4054..4150TCONS_00026318-exon-sc0000569-1491911889:4054..4150Clytia hemisphaericaexon
TCONS_00026318-exon-sc0000569-1491911889:27..262TCONS_00026318-exon-sc0000569-1491911889:27..262Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000569supercontigsc0000569:27..10792 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.48632e-07	5.86238e-06	0.0828402	0.000965519	8.02885e-09	0.0279234	0.060132	0.0269263	0	0	0.0994069	0	0	0	0	0	1.90465e-08	0	0	0.0253515	0	0.0285163	0	0.0392924	0.00916816	0.222028	0.0171171	0	2.18777e-06	0
Blast
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BLAST of TCONS_00026318 vs. Swiss-Prot (Human)
Match: MSH4 (MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.981e-57
Identity = 90/158 (56.96%), Postives = 122/158 (77.22%), Query Frame = 2 
Query:  146 LLIAIAEGRGLAKGEIGLTSLDFKASEMVLSQFSDNATYVKVLTKIQVLQPNEIIMPTTACENGNMSPLFEAISQQNPHINLTTVQRKYFNETKGLECIKDVCVPEFQTVEMDVQNKYYCLATTAALVKYTEFVYNMVLAAKSLKVLFKGGEKTMLID 619
            +++A+ EGRGLA+GEIG+ S+D K  +++LSQF+DN TY KV+TK+++L P EIIM  TAC  GN + LF  I++   ++N TT+QRKYFNETKGLE I+ +C+ EF TV M+VQ+KYYCLA  AAL+KY EF+ N V A KSLK+ F+G E+T +ID
Sbjct:  156 VIVAVVEGRGLARGEIGMASIDLKNPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACAVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQLCIAEFSTVLMEVQSKYYCLAAVAALLKYVEFIQNSVYAPKSLKICFQGSEQTAMID 313
The following BLAST results are available for this feature:
BLAST of TCONS_00026318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH41.981e-5756.96MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=... [more]
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