TCONS_00026175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026175
Unique NameTCONS_00026175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026175 ID=TCONS_00026175|Name=TCONS_00026175|organism=Clytia hemisphaerica|type=transcript|length=1616bp
GGTACTAAAGGCTTGCAGATAACGGAAATTGTTGACGACATTTCACCTCT
TCGAGAGATAAGAAAAACACATCATTTCTACATCTATACACAACAAAGAT
GGCGTCGTATGCATTAATGAAAAGACATGTACAAAAAAGCAAACCTAATA
ATGAATGTTTACCAGAAGAACAAATCAAAGAATACCAAGACGCTTTCCAG
ATGTTTGACAAGGATGGCAATGGTTATATCACCACAAGAGAGTTGAAGGC
GCTACTGAGATGTTTAGGATGTAACCCGACTGATTCAGAACTTCAACAAA
TTATCAACGAGGCTGATGCTGACGggaATGGAAAAATCGATTTTCAAGAG
TTCATTACTCTTATGGAGAAGATGACAAAACCTACTGAAGAATTAGCAAG
TACATTAGAAGCTTTTCGTGTCTTCGATAGAGATGGTCTTGGTACAATCA
ATAGTAAATCTATTCGAGAGATTATGCATCGATCACTTGAACAAGTTCCT
GTTACTGAAATTAATGAGATCTTGGAAAACCTCGGTTTGGTTAAAGATCG
TATAGTTACTTATGAAGAATTTGCAAAGTTGGTGACACCAAAAGCAGCTT
TTCACGTGTCACGTGACAAACTTCATGACCTTTCAGCTGCAGCCGTTGCA
AGTGCTGTTGATATCTCTTTCGAATCTCAAGCTTCTTGATTGGTTATTGA
CCGGAGATGTTGTTGGATATAATATGGAATGTGGTTGGATGAAGTTCAAT
GCCGTTTGCATTGGAAATATAAACAAAGAAGAGCTGGACCTGTTTGTTGG
TATGTAAAAATGATAACCGAAAAATATTCGTTGCTTTTGCGAATATTGAC
GAGAATACTCTTGATAATGGCTTTTTGATGTATGAGTAATTCATTAATAA
TGATACCATAAAAAAATGATGATTCTCGGCGGATCTCTTGCATGAGTAAA
GAAACATGCATCATGGGCATCTCTCTATAAATTATGATGTTTATAGCAAG
AATGCGTAACAAATGAAATTGTTCGTAACAAATTGAACGTTCGTATAACA
TTTTACTTGTGAATGTTGTTTTGACATTTAAGCCCAGCTGCTGAATTGAG
AATTCAATTTCTTGCCATCCAATGCTCAAACAATTAATTATTCAACTGAG
TCATTAAGCCATGATGCAATGGAGGTAGTATTGATAAAACAATAAGCAAt
ctcacagtcgaaatgaatcacgGGTAATCAGTACCACTATATTTTTGCGT
CTGTAACATGGTGttctaaatatttcaaatatgttCCCAacaaatttaga
acgccattgTTCGTAAATGACTGGGAAGCCGTTATGGGGACGCAATCAGT
TCTGATTGCCAATGATTCATTTCGACCAATGTTTAGGTTAACTATGTTTT
CTCTGTATGACGAGTTACTACTGTTCcttcaaaaacaatattttgttGTA
AATATCCTAAATAAAGAAACTGTATAAGTATGATAATAATGTTCATTTTC
TGAGAAAGTtttaatcccggggggggggggttactaggtttgcgaggtga
atggtatgtccgagccaaaaatcgagTGGGACAATTGGGGTTATTGGGAC
CCCTAGAGAgattttt
Run BLAST on NCBI

transcript from alignment at sc0000564:31751..36225+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026175 ID=TCONS_00026175|Name=TCONS_00026175|organism=Clytia hemisphaerica|type=transcript|length=4475bp|location=Sequence derived from alignment at sc0000564:31751..36225+ (Clytia hemisphaerica)
GGTACTAAAGGCTTGCAGATAACGGGTATGTGTTGACCTCAACCACTGAT
TTTCAGATGTTTTATTGACctatttatgatatgcaccattgtaatgtctt
ctgaCGTTgtatcacggacccaacagctgattggtagtaagtgacgtatt
gactgattttacgtcacttacaatcaattagctattgggtccgtgatgta
atgtcagaagacattacaatggtgcatatcatgaatataattCTTCTCAT
AGAAATTGTTGACGACATTTCACCTCTTCGAGAGATAAGAAAAACACATC
ATTTCTACATCTATACACAACAAAGATGGCGTCGTATGCATTAATGAAAA
GACATGTACAAAAAAGCAAACCTAATAATGtaagagatgaaattttttgg
aACTTCTTGGTGAATATTCTTTGGTCACAAATTCAAAATCTACTTGATTT
GTTATTTAAGATATATTTGATTTGCCATACAATATGGATCGAAGtgattt
ctttactttaccCAATTTGAGGCTCTTTGGtaaaaaattccccaaaaatT
CTGTATTTCTATGATTCATTGAATttatattacacgtttttttataagaa
catccaaaattttcgaagccttgggatgtccttatttttttgggtttcaa
gcctaaaaatgttcttattttcaccattttgcgaccatttttacctattt
tcctaagaaaacgggtgtttttgagtccacaaagcctcaaaaagttctta
acttgttcttaacattttggccatcgaagctttatggtcttatatagttt
gttcttataaaaaaagttttctgtttttCCATTATACACAGGAATGTTTA
CCAGAAGAACAAATCAAAGGTAAGCGATTGCCTTCAATTATCTTGGTATA
AGGATCAACTAGGAATTGCTGGAAGTAAAGTTTGCCAGCACGATGAAGTG
CAGAAAACTCAGGACGTACAGTAATACGATGTTGATATAACTCTTTGATG
CTTGAGCTGTGTCTGATCATGGCGTAGGATTTAATGATATGTCATTTGGG
TATTCCATCCTACATCGAATATCAAACAACGGCTAGGTTAATAGATCAAA
GGTTTTTACTAAAATGAACTCCTAGGAGATTGGATTGGTCCCCAATAGTT
GCACTTCACACTTTTTTATCATAAACTTTGGCTCAATCTTcgtatttata
tattttcagcctcaaaataaaaatcataaagataTACTCAAAATTCTCAA
TTGCTTTACTAGAAACATAAAATCGTTGTTTTCTGAGTCATATCTGAGGT
ATTCAGCCTCGTGTTCCAtgatttttactttgaaaaaaatgttctctTCT
TCGGAGAAATCGAAAGTCATTTGATTGGGAAACAATGTCATCGACAGAAA
AATATTGTTGGATAAACATTAAAATGGGATTCCTTAAAATGGATATAGTG
ATTTCCGAGCATTTCTTTCCAAAtagttaaattttgttttacaGAATACC
AAGACGCTTTCCAGATGTTTGACAAGGATGGCAATGGTTATATCACCACA
AGAGAGTTGAAGGCGCTACTGAGATGTTTAGGATGTAACCCGACTGATTC
AGAACTTCAACAAATTATCAACGAGGCTGATGCTGACGGTATATTATTAT
ATTCTCTTTCACTTTagctttattttgatgtttgattttcttccatttct
aatttttgaaaaaaagctgGTAGACCGGCTGTGTAAAACCTCTATGGTGT
CTTCTTTCTAACTGAGGAAAGGCAGAAAGTTTGTAACGGAGCTTTTTAAG
TGAGTTTCTAAACATTGATCAAAAACGGTGACCACgacgaccggcgacca
cgaccagatAAATTCGGGTTATCGAGTTTCCTTTTCTCCAACCTAGAGtg
tcttttcttctttcatttgaATATATTGTATTGAAGAGTAACCTCACCTC
ATCTATTTAGAGACACGTGCCAAATGCATAAAACAACTATTTCGATGCTC
TTGGAGATTTATTAGGGTGTCAATTTTTAAGTCGACTGACACTATTATCA
ACTATCTTATTACATGAATAAGCCATTTTTAAAAgcaatcttcatttcta
gggaATGGAAAAATCGATTTTCAAGAGTTCATTACTCTTATGGAGAAGAT
GACAAAACCTACTGAAGAATTAGCAAGTACATTAGAAGCTTTTCGTGTCT
TCGATAGAGATGGTAGGTACCATAGTCATGCTTGCCATTAAACCATTATT
TCAGCTTGATAGACCAGTAGCGTGGTAAGAAAAGTGAAAATAGAGAAAGT
TTATTTGAAATTGGTTTTAATAATATGATTGATCTAATGTAAACAAGTTT
AAatttaatacactttttttttataagaacaattttataagaacaatcag
gctcaaaaatgcccaaaaataagaacaatttaagaacagtgaagaggctg
aagttagagagttatagcaaaaagaatcactggtttctaaaatcctctaa
atagtaaagtaaatagccaaaacttgtttttacatagtaaagtaaatagc
caaaacttgttttttaccttagaaaaaataagaacaaaataagaacaatt
caaggctcaaagtgccaaaaaaataagaacagccgaGCCTCAGCAAAAAA
TTACTGGTTCTTATAAAAAAAAATATGAGCCTCGACTGTTCTTATTTTTT
GGCAATGTGAGTCTCAAACTGTTCTTATCCTGTCCTTATTTATAGGGTGA
AATTGGGGTATTTTAGGCTTAATTCCCAATTTTTACTACTTTGACCCCTA
AATTGCTTGAGATTAAGTAATTTCAGGGCTCAGAATTGCTATTAAATTGT
TCTTATTTTTTGGCCTCCTTGTTCATAAAACGTGGTTCTTATATAAGAAG
AAGAGTGTATTATGCTAAGCTTGTCTCCGTGGTTATCTCTACCCTGAATC
TTTCTTTTTTGAATTTATTAGGTCTTGGTACAATCAATAGTAAATCTATT
CGAGAGATTATGCATCGATCACTTGAACAAGTTCCTGTTACTGAAATTAA
TGAGATCTTGGAAAACCTCGGTTTGGTTAAAGATCGTATAGTTACTTATG
AAGGTAAACATATATTTCAATTTtcgttttaaaaacatttaaaaatctag
aaatctagtctacacaatagacagctccagccTTTCAGGCCTTACTCTTG
AGTAGGAGCTTTACGCACAAAACGAGGGAAGATTACTACCCTTACGAAGA
CGGTTCTTCTGTTTAGATTTGCTGCAGTAAAAATAACTTTGATGATAAGA
TTTAATAGTTTTTTTACCAATCTTAACTTAGCTTAACTGAGACGCTTAAC
AAGCTACAGCTTTAGCCCCTACCCTTTGAAGATCATTGTACTAGTCAATT
TGAATTATCATTATCTCTTTCAATAGAATTTGCAAAGTTGGTGACACCAA
AAGCAGCTTTTCACGTGTCACGTGACAAACTTCATGACCTTTCAGCTGCA
GCCGTTGCAAGTGCTGTTGATATCTCTTTCGAATCTCAAGCTTCTTGATT
GGTTATTGACCGGAGATGTTGTTGGATATAATATGGAATGTGGTTGGATG
AAGTTCAATGCCGTTTGCATTGGAAATATAAACAAAGAAGAGCTGGACCT
GTTTGTTGGTATGTAAAAATGATAACCGAAAAATATTCGTTGCTTTTGCG
AATATTGACGAGAATACTCTTGATAATGGCTTTTTGATGTATGAGTAATT
CATTAATAATGATACCATAAAAAAATGATGATTCTCGGCGGATCTCTTGC
ATGAGTAAAGAAACATGCATCATGGGCATCTCTCTATAAATTATGATGTT
TATAGCAAGAATGCGTAACAAATGAAATTGTTCGTAACAAATTGAACGTT
CGTATAACATTTTACTTGTGAATGTTGTTTTGACATTTAAGCCCAGCTGC
TGAATTGAGAATTCAATTTCTTGCCATCCAATGCTCAAACAATTAATTAT
TCAACTGAGTCATTAAGCCATGATGCAATGGAGGTAGTATTGATAAAACA
ATAAGCAAtctcacagtcgaaatgaatcacgGGTAATCAGTACCACTATA
TTTTTGCGTCTGTAACATGGTGttctaaatatttcaaatatgttCCCAac
aaatttagaacgccattgTTCGTAAATGACTGGGAAGCCGTTATGGGGAC
GCAATCAGTTCTGATTGCCAATGATTCATTTCGACCAATGTTTAGGTTAA
CTATGTTTTCTCTGTATGACGAGTTACTACTGTTCcttcaaaaacaatat
tttgttGTAAATATCCTAAATAAAGAAACTGTATAAGTATGATAATAATG
TTCATTTTCTGAGAAAGTtttaatcccggggggggggggttactaggttt
gcgaggtgaatggtatgtccgagccaaaaatcgagTGGGACAATTGGGGT
TATTGGGACCCCTAGAGAgattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014720XLOC_014720Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026175-exon-sc0000564-1491911889:31751..31775TCONS_00026175-exon-sc0000564-1491911889:31751..31775Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1510915933:31751..31775TCONS_00026175-exon-sc0000564-1510915933:31751..31775Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1575043694:31751..31775TCONS_00026175-exon-sc0000564-1575043694:31751..31775Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1491911889:32003..32129TCONS_00026175-exon-sc0000564-1491911889:32003..32129Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1510915933:32003..32129TCONS_00026175-exon-sc0000564-1510915933:32003..32129Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1575043694:32003..32129TCONS_00026175-exon-sc0000564-1575043694:32003..32129Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1491911889:32592..32619TCONS_00026175-exon-sc0000564-1491911889:32592..32619Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1510915933:32592..32619TCONS_00026175-exon-sc0000564-1510915933:32592..32619Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1575043694:32592..32619TCONS_00026175-exon-sc0000564-1575043694:32592..32619Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1491911889:33245..33388TCONS_00026175-exon-sc0000564-1491911889:33245..33388Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1510915933:33245..33388TCONS_00026175-exon-sc0000564-1510915933:33245..33388Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1575043694:33245..33388TCONS_00026175-exon-sc0000564-1575043694:33245..33388Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1491911889:33852..33962TCONS_00026175-exon-sc0000564-1491911889:33852..33962Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1510915933:33852..33962TCONS_00026175-exon-sc0000564-1510915933:33852..33962Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1575043694:33852..33962TCONS_00026175-exon-sc0000564-1575043694:33852..33962Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1491911889:34722..34853TCONS_00026175-exon-sc0000564-1491911889:34722..34853Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1510915933:34722..34853TCONS_00026175-exon-sc0000564-1510915933:34722..34853Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1575043694:34722..34853TCONS_00026175-exon-sc0000564-1575043694:34722..34853Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1491911889:35177..36225TCONS_00026175-exon-sc0000564-1491911889:35177..36225Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1510915933:35177..36225TCONS_00026175-exon-sc0000564-1510915933:35177..36225Clytia hemisphaericaexon
TCONS_00026175-exon-sc0000564-1575043694:35177..36225TCONS_00026175-exon-sc0000564-1575043694:35177..36225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000564supercontigsc0000564:31751..36225 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.118641	0	0	0	0	0.0636384	1.97452e-06	1.39283	1.00738	0.933719	0.646976	1.09004	1.17882	0	0	0.464705	1.45997e-09	1.34021	1.4539	1.5551	1.61382	0	2.14251	0.183754	0.553902	7.31427	5.24932	0.343539	0
Blast
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BLAST of TCONS_00026175 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.943e-40
Identity = 70/145 (48.28%), Postives = 100/145 (68.97%), Query Frame = 3 
Query:  159 LPEEQIKEYQDAFQMFDKDGNGYITTRELKALLRCLGCNPTDSELQQIINEADADGNGKIDFQEFITLMEKMTKPTEELASTLEAFRVFDRDGLGTINSKSIREIMHRSLEQVPVTEINEILENLGLVKDRIVTYEEFAKLVTPK 593
            L EEQI E+++AF +FDKDG+G ITT+EL  ++R LG NPT++ELQ +INE DADGNG IDF EF+T+M +  K T+      EAFRVFD+DG G I++  +R +M    E++   E++E++    +  D  V YEEF +++T K
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
The following BLAST results are available for this feature:
BLAST of TCONS_00026175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.943e-4048.28Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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