|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026151 ID=TCONS_00026151|Name=TCONS_00026151|organism=Clytia hemisphaerica|type=transcript|length=1364bp
TGGACAGGAACTTATAATATACATATACCATCGACTTtaactttcaatat
ttttttaaacacatTATTATACCAAaacaaaaccattaaaaatggtataa
aattttatcaaataaaaacataaaattttatcaaataaaatttatagtag
ttttaaaaattgtttaacaataataaaaatttgcaaacatgtaaaagaaa
tgatttttgatttagaCCTTATAACTTCGTTCCaaccagtggcgtggtgg
cagggggccctgattttcaaaaaggtataagttatttttattgtttgcCC
TGGGATCGAGGGTGACTTAGTTCTTCATCTAGTAGCTTATTGATCTTAAA
ATATCAGCTCTCAAAAACTGCATTAATTTGAACATTGCAAAGATTTACCG
GTATTACAATATTTCGGTTACTTTGTTGGTGGTGATAAGATTTctcattt
tcgtttttttaaatcataaaGTTGAGGATTTTCGtatctccataattcga
atgtcTGTAACTGCACGAATGAATCTTTAACTCAAACCATCTGGTCATAT
TAAGTTGATAAGCCTTTGCAAATAGGTCACCGTAACTGGAATTTTCATAT
ATCTCGAACAAATTTTCGTTCCATCACATACGTGTTGAAGTTGTGGAAAT
TCCACTGTATTTAACACATGGTCTTTCCAATTATCGTTCAAACAGTGTTT
AATGAATTACTGCACAACTGAGGAGACGGTCGCATTATCGATTGGAGGAG
CTGGTACAGGTCCATCATGTGAGTAATGTCCCCTTCTCAGCTTCTGACTA
CTCACAACTACATCCCCCACATAAAGTGCAACAGCTATGAAACCACACAC
TGCTCCTAGCTCAGCAACAGAACACGATGTTGCACTTTGTTTGAGGTCGA
TAAATTCACATTCGTTGACAAATCGTTGATTTTGTCCTTCCTGAAAAACG
CGTGTTGATTTCCGCATACTTTCTATGTTACTTGCCAATAATCCGGACGA
GATAAGCAGGAATACGGAAAATATAACACCGTTGATTAAGTTCACCCAGT
GCCATGGTACGGGTAAATTCCGGGTGAGGCGAAATAAATTGAGAATAAAA
ATTAAGACGGAAGTGAACCATGCAACAGCGGAAACCAAGATAAAGAACCG
GACACGAGAATATGTCGTATTAACAAAAATGACTTCAACATCAAATGATA
ACACAGCTCCAAAACCGATCAGCAAAACACCAATctgtaaaatcttcaaa
atggcTAAGATAGATTTCAGGTAGATTTTATCATacaccaaaaacatttt
tgcgaTTCAAAGCTACTTGAATTTTtgactgtaattttttttcgtcacat
aaatctaacataaa Run BLAST on NCBI transcript from alignment at sc0000563:88147..90429- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026151 ID=TCONS_00026151|Name=TCONS_00026151|organism=Clytia hemisphaerica|type=transcript|length=2283bp|location=Sequence derived from alignment at sc0000563:88147..90429- (Clytia hemisphaerica)
TGGACAGGAACTTATAATATACATATACCATCGACTTTAACTTTCAATAT
TTTTTTAAACACATTATTATACCAAAACAAAACCATTAAAAATGGTATAA
AATTTTATCAAATAAAAACATAAAATTTTATCAAATAAAATTTATAGTAG
TTTTAAAAATTGTTTAACAATAATAAAAATTTGCAAACATGTAAAAGAAA
TGATTTTTGATTTAGACCTTATAACTTCGTTCCAACCAGTGGCGTGGTGG
CAGGGGGCCCTGATTTTCAAAAAGGTATAAGTTATTTTTATTGTTTGCCC
TGGGATCGAGGGTGACTTAGTTCTTCATCTAGTAGCTTATTGATCTTAAA
ATATCAGCTCTCAAAAACTGCATTAATTTGAACATTGCAAAGATTTACCG
GTATTACAATATTTCGGTTACTTTGTTGGTGGTGATAAGATTTCTCATTT
TCGTTTTTTTAAATCATAAAGTTGAGGATTTTCGTATCTCCATAATTCGA
ATGTCTGTAACTGCACGAATGAATCTTTAACTCAAACCATCTGGTCATAT
TAAGTTGATAAGCCTTTGCAAATAGGTCACCGTAACTGGAATTTTCATAT
ATCTCGAACAAATTTTCGTTCCATCACATACGTGTTGAAGTTGTGGAAAT
TCCACTGTATTTAACANACGTTCAAAAATTGTTTAATTTTATGACATTTT
ATTGTTTTCATAATTAAGTCTCTATAAGTGACAAAATTTAATATTTGGGT
TCGGGCTTTAACACGAATTCTTCACATTTTATTGTTTTCAAGCAGAGGGG
CCGTTTAGCTTTTTAGCATTTCTCTATGGAAAAATATGGACAGAACTTTT
CCTTTCAACATCGATTTTAAGCTACGATAAGGAATTAAAATTTATTATTT
TAAATTCAGTTTTTGCTGGACATGAACTTATAATATACATATACCATCGA
CTTTAACTTTCAATATTTTTTTAAACACATTATTATACCAAAACAAAACC
ATTAAAAATGGTATAAAATTTTATCAAATAAAAACATAAAATTTTATCAA
ATAAAATTTATAGTAGTTTTAAAAATTGTTTAACAATAATAAAAATTTGC
AAACATGTAAAAGAAATGATTTTTGATTTAGACCTTATAACTTCGTTCCA
ACCAGTGGCGTGGTGGCAGGGGGCCCTGATTTTCAAAAAGGTATAAGTTA
TTTTTATTGTTTGCCCTGGGATCGAGGGTGACTTAGTTCTTCATCTAGTA
GCTTATTGATCTTAAAATATCAGCTCTCAAAAACTGCATTAATTTGAACA
TTGCAAAGATTTACCGGTATTACAATATTTCGGTTACTTTGTTGGTGGTG
ATAAGATTTCTCTTTTTCGTTTTTTTAAATCATAAAGTTGAGGATTTTCG
TATCTCCATAATTCGAATGTCTGTAACTGCACGAATGAATCTTTAACTCA
AACCATCTGGTCATACTAAGTTGATAAGCCTTTGCAAATAGGTCACCGTA
ACTGGAATTTTCATATATCTGGAACAAATTTTTGTTCCATCGCATACGTG
TTGAAGTTGTGGAAATTCCACTGTATTTATTAACACATGGTCTTTCCAAT
TATCGTTCAAACAGTGTTTAATGAATTACTGCACAACTGAGGAGACGGTC
GCATTATCGATTGGAGGAGCTGGTACAGGTCCATCATGTGAGTAATGTCC
CCTTCTCAGCTTCTGACTACTCACAACTACATCCCCCACATAAAGTGCAA
CAGCTATGAAACCACACACTGCTCCTAGCTCAGCAACAGAACACGATGTT
GCACTTTGTTTGAGGTCGATAAATTCACATTCGTTGACAAATCGTTGATT
TTGTCCTTCCTGAAAAACGCGTGTTGATTTCCGCATACTTTCTATGTTAC
TTGCCAATAATCCGGACGAGATAAGCAGGAATACGGAAAATATAACACCG
TTGATTAAGTTCACCCAGTGCCATGGTACGGGTAAATTCCGGGTGAGGCG
AAATAAATTGAGAATAAAAATTAAGACGGAAGTGAACCATGCAACAGCGG
AAACCAAGATAAAGAACCGGACACGAGAATATGTCGTATTAACAAAAATG
ACTTCAACATCAAATGATAACACAGCTCCAAAACCGATCAGCAAAACACC
AATCTGTAAAATCTTCAAAATGGCTAAGATAGATTTCAGGTAGATTTTAT
CATACACCAAAAACATTTTTGCGATTCAAAGCTACTTGAATTTTTGACTG
TAATTTTTTTTCGTCACATAAATCTAACATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026151-exon-sc0000563-1575043694:89765..90429 | TCONS_00026151-exon-sc0000563-1575043694:89765..90429 | Clytia hemisphaerica | exon |
| TCONS_00026151-exon-sc0000563-1575043694:88147..88845 | TCONS_00026151-exon-sc0000563-1575043694:88147..88845 | Clytia hemisphaerica | exon |
| TCONS_00026151-exon-sc0000563-1510915933:89765..90429 | TCONS_00026151-exon-sc0000563-1510915933:89765..90429 | Clytia hemisphaerica | exon |
| TCONS_00026151-exon-sc0000563-1510915933:88147..88845 | TCONS_00026151-exon-sc0000563-1510915933:88147..88845 | Clytia hemisphaerica | exon |
| TCONS_00026151-exon-sc0000563-1491911889:89765..90429 | TCONS_00026151-exon-sc0000563-1491911889:89765..90429 | Clytia hemisphaerica | exon |
| TCONS_00026151-exon-sc0000563-1491911889:88147..88845 | TCONS_00026151-exon-sc0000563-1491911889:88147..88845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000563 | supercontig | sc0000563:88147..90429 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008253 | Marvel |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
|
