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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025985 ID=TCONS_00025985|Name=TCONS_00025985|organism=Clytia hemisphaerica|type=transcript|length=1698bp
GAATTTTTCGTGACAAAAGTATTTTTACACTAGCGGATATTGAAATTCAT
AAGGATCAAGTTTTTGACTGCCTTTTTAAAGATGTTGATGAAGAGTTTGA
CACATTGACTCAGCAGTCTCTTGAAATAATCCTCTATGCCATATTGATTA
TTTTGGAAAGACAGTGTCATGATCAATTACCTGGGGGCAAATACTGGAAT
GTAGATTCAAACatagaaaaaatttcatctacTGTACCCACAACAAATAA
GGCTTCAGAGAGTGACTTTGCAATTCTTGATTTGCTTGTTCGTACTAAAC
CTAACGCTCGTGTTCAAACCATCCAAGCATTTACAATGTGGTCCCGAAAT
AGTACAAATGAATGGCTTGATGGCAAAACTGATGATGAGCGTGATACAAT
TTTGAATAAGGCTCGACAGTTAGCTCCTAAAATGAGNAAACCATCCAAGC
ATTTACAATGTGGTCCCGAAATAGTACAAATGATTGGCTTGATGGCAAAA
CTGATTATGAGCGTGATACAATTTTGAATAAGGCTAGACAGTTAGCTCCT
AAAATGAAAGCCAAATATGCAGAGCGAAAAACAACTTTAATTTCTGCGAA
GAAAGAAAGATTGGaacgaaaacaaaaagaaaagattgaaaTGAAAGAGA
AAATAGCAGCAAAAAAAGCTGTAGCAGTTAATAATCTAATTCAAGCAGGT
CACAAGGTATGGCTAACAGAACAGGAAGTCGAAACTGGCATTGTTTCCAT
TAATGCAGATAAAGATAAGTGTCaaattcttttgttacaaattgCATTTT
ATAAAGATGTAATGAATGTGGATTGTCAGAGGTCTCTTTTCAACAAGACC
AGGATAAGTAATGAAGGAAAAAGAGTCAAATTAAATTATTCAGAACTTCT
AGAGAATTTGAAGGCTATAATGATAATCAGTAAAATACGGCCTGAACAAG
CTGTCAAGCCAACCAAACTGAAACCATCTCAAGAGAGGGGAGAGATTATT
GACAGTCACAAAAAAGATTTATTTGACAATTTAAATGATTCAAGATTGAA
GGAAATAATTAAGAATCAAGTCAAGACTCTAATGCCCGCATTTCTAGAAA
ACCCCGAGAGTATTGTGGGAAGAAAAGTTAGATATCGTGTTAaggaagaa
gatgaaaaagtaCATTGGAGTCTAGCTGAAATCAAAAAACTTATCAAACC
CCATAAGGTTCCAAAGAAAATTCTCTTCCAAATTGAATTTAgtgatgatg
atgaaacttatGACTTGCCTGTTCTTTCAGATTTCGATAAAAATGATGTT
CTGTTCATATAATTTTCATAAATagagaagcaaaaaaatccaaaagaaTC
TTAGTTCATTTTTATCGTTAATAATGATGTTCTGTTCATATAATTTTCAA
AGATAGAGaagcaaaaaatacaaaaaaatcttaGTTCATTATTATCGTTA
ATTGTTTTAAAAGCTTATCAAAAGGAGAAGGTGATTCATTCATGTGGTTT
AAAGGGCGGATGGGAGTCCCActtcaaacattcaaaaattattttgatct
cCTGGATGGTATTTTGATAATACCTAGAGANGTAAAGGGCGGATGGGAGT
CCCActtcaaacattcaaaaattattttgatctcCTGGATGGTATTTTGA
TAATACCTAGAGATCTTTCATATCTCAAgactaaattcaatttttctc Run BLAST on NCBI protein sequence of TCONS_00025985-protein >TCONS_00025985-protein ID=TCONS_00025985-protein|Name=TCONS_00025985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MWSRNSTNDWLDGKTDYERDTILNKARQLAPKMKAKYAERKTTLISAKKE
RLERKQKEKIEMKEKIAAKKAVAVNNLIQAGHKVWLTEQEVETGIVSINA
DKDKCQILLLQIAFYKDVMNVDCQRSLFNKTRISNEGKRVKLNYSELLEN
LKAIMIISKIRPEQAVKPTKLKPSQERGEIIDSHKKDLFDNLNDSRLKEI
IKNQVKTLMPAFLENPESIVGRKVRYRVKEEDEKVHWSLAEIKKLIKPHK
VPKKILFQIEFSDDDETYDLPVLSDFDKNDVLFI Run BLAST on NCBI transcript from alignment at sc0000556:222574..224271 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025985 ID=TCONS_00025985|Name=TCONS_00025985|organism=Clytia hemisphaerica|type=transcript|length=1698bp|location=Sequence derived from alignment at sc0000556:222574..224271 (Clytia hemisphaerica)
gagaaaaattgaatttagtcTTGAGATATGAAAGATCTCTAGGTATTATC
AAAATACCATCCAGgagatcaaaataatttttgaatgtttgaagTGGGAC
TCCCATCCGCCCTTTACNTCTCTAGGTATTATCAAAATACCATCCAGgag
atcaaaataatttttgaatgtttgaagTGGGACTCCCATCCGCCCTTTAA
ACCACATGAATGAATCACCTTCTCCTTTTGATAAGCTTTTAAAACAATTA
ACGATAATAATGAACtaagatttttttgtattttttgcttCTCTATCTTT
GAAAATTATATGAACAGAACATCATTATTAACGATAAAAATGAACTAAGA
ttcttttggatttttttgcttctctATTTATGAAAATTATATGAACAGAA
CATCATTTTTATCGAAATCTGAAAGAACAGGCAAGTCataagtttcatca
tcatcacTAAATTCAATTTGGAAGAGAATTTTCTTTGGAACCTTATGGGG
TTTGATAAGTTTTTTGATTTCAGCTAGACTCCAATGtactttttcatctt
cttcctTAACACGATATCTAACTTTTCTTCCCACAATACTCTCGGGGTTT
TCTAGAAATGCGGGCATTAGAGTCTTGACTTGATTCTTAATTATTTCCTT
CAATCTTGAATCATTTAAATTGTCAAATAAATCTTTTTTGTGACTGTCAA
TAATCTCTCCCCTCTCTTGAGATGGTTTCAGTTTGGTTGGCTTGACAGCT
TGTTCAGGCCGTATTTTACTGATTATCATTATAGCCTTCAAATTCTCTAG
AAGTTCTGAATAATTTAATTTGACTCTTTTTCCTTCATTACTTATCCTGG
TCTTGTTGAAAAGAGACCTCTGACAATCCACATTCATTACATCTTTATAA
AATGcaatttgtaacaaaagaatttGACACTTATCTTTATCTGCATTAAT
GGAAACAATGCCAGTTTCGACTTCCTGTTCTGTTAGCCATACCTTGTGAC
CTGCTTGAATTAGATTATTAACTGCTACAGCTTTTTTTGCTGCTATTTTC
TCTTTCAtttcaatcttttctttttgttttcgttCCAATCTTTCTTTCTT
CGCAGAAATTAAAGTTGTTTTTCGCTCTGCATATTTGGCTTTCATTTTAG
GAGCTAACTGTCTAGCCTTATTCAAAATTGTATCACGCTCATAATCAGTT
TTGCCATCAAGCCAATCATTTGTACTATTTCGGGACCACATTGTAAATGC
TTGGATGGTTTNCTCATTTTAGGAGCTAACTGTCGAGCCTTATTCAAAAT
TGTATCACGCTCATCATCAGTTTTGCCATCAAGCCATTCATTTGTACTAT
TTCGGGACCACATTGTAAATGCTTGGATGGTTTGAACACGAGCGTTAGGT
TTAGTACGAACAAGCAAATCAAGAATTGCAAAGTCACTCTCTGAAGCCTT
ATTTGTTGTGGGTACAgtagatgaaattttttctatGTTTGAATCTACAT
TCCAGTATTTGCCCCCAGGTAATTGATCATGACACTGTCTTTCCAAAATA
ATCAATATGGCATAGAGGATTATTTCAAGAGACTGCTGAGTCAATGTGTC
AAACTCTTCATCAACATCTTTAAAAAGGCAGTCAAAAACTTGATCCTTAT
GAATTTCAATATCCGCTAGTGTAAAAATACTTTTGTCACGAAAAATTC Coding sequence (CDS) from alignment at sc0000556:222574..224271 >TCONS_00025985 ID=TCONS_00025985|Name=TCONS_00025985|organism=Clytia hemisphaerica|type=CDS|length=855bp|location=Sequence derived from alignment at sc0000556:222574..224271 (Clytia hemisphaerica)
TTATATGAACAGAACATCATTTTTATCGAAATCTGAAAGAACAGGCAAGT
CataagtttcatcatcatcacTAAATTCAATTTGGAAGAGAATTTTCTTT
GGAACCTTATGGGGTTTGATAAGTTTTTTGATTTCAGCTAGACTCCAATG
tactttttcatcttcttcctTAACACGATATCTAACTTTTCTTCCCACAA
TACTCTCGGGGTTTTCTAGAAATGCGGGCATTAGAGTCTTGACTTGATTC
TTAATTATTTCCTTCAATCTTGAATCATTTAAATTGTCAAATAAATCTTT
TTTGTGACTGTCAATAATCTCTCCCCTCTCTTGAGATGGTTTCAGTTTGG
TTGGCTTGACAGCTTGTTCAGGCCGTATTTTACTGATTATCATTATAGCC
TTCAAATTCTCTAGAAGTTCTGAATAATTTAATTTGACTCTTTTTCCTTC
ATTACTTATCCTGGTCTTGTTGAAAAGAGACCTCTGACAATCCACATTCA
TTACATCTTTATAAAATGcaatttgtaacaaaagaatttGACACTTATCT
TTATCTGCATTAATGGAAACAATGCCAGTTTCGACTTCCTGTTCTGTTAG
CCATACCTTGTGACCTGCTTGAATTAGATTATTAACTGCTACAGCTTTTT
TTGCTGCTATTTTCTCTTTCAtttcaatcttttctttttgttttcgttCC
AATCTTTCTTTCTTCGCAGAAATTAAAGTTGTTTTTCGCTCTGCATATTT
GGCTTTCATTTTAGGAGCTAACTGTCTAGCCTTATTCAAAATTGTATCAC
GCTCATAATCAGTTTTGCCATCAAGCCAATCATTTGTACTATTTCGGGAC
CACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025985-exon-sc0000556-1491911889:222574..224271 | TCONS_00025985-exon-sc0000556-1491911889:222574..224271 | Clytia hemisphaerica | exon |
| TCONS_00025985-exon-sc0000556-1510915933:222574..224271 | TCONS_00025985-exon-sc0000556-1510915933:222574..224271 | Clytia hemisphaerica | exon |
| TCONS_00025985-exon-sc0000556-1575043694:222574..224271 | TCONS_00025985-exon-sc0000556-1575043694:222574..224271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000556 | supercontig | sc0000556:222574..224271 . |
Blast
The following BLAST results are available for this feature:
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