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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025949 ID=TCONS_00025949|Name=TCONS_00025949|organism=Clytia hemisphaerica|type=transcript|length=1554bp
TTACTATCAAAATCATTCATGAAAAGAGCTGACATGATCCTGGATTTTCA
GAATGACAGTGCAAATGCATTGGGGGAAACTGTTCACCTAGCAAAAACTT
CAAGTGGACATGATACCATTCCTCTGACCAAACCACGTCAAATAATTGCT
TCAATAGACAAGCCTTTTGAAtgtaattttgttttcatttggaAAGAGGA
CAAAAACATGTCCTCAATTGCTGAAAAACTTCACCGGCAGTTTGCTCAAC
CATCTCTCAACTCTTGTCTCTTATCAATAAAGCAGGGGCACCATGGAGTA
ACAACAAGAAGTGGATATCAGAAATCAAAAGAGTAGACAAGGAATGTACA
ACATGCCAAATCTACAGAAGATCACCACCTCGTCCTGTTGTTGGATTACC
CATGGCATCAAAATTTCTCGAAACAGTTGCCATGGACTTGAAATTCTACA
ATAAGAAAATAATTCTCCATCTTATCGATATGTGTACTCGCTTGTCAGCT
GCAATGACTATAAAGGATAAAAATCCAACCACAGTTATTGAGGCAATATT
AAAAACGTGGATATCCGTCTATGGCTCATGTGAGAAGTTCCTCGTGGATA
ATGGAGGTGAGTTTGCAAATGAGGAATTAATCAATCTAGCAGAACAGTTT
GGAATCACGATAAAGACTACTGCGGCTGAATCTCCCTGGTCAAATGGCAT
TGTAGAAAGACATAATCAAACACTTTCCAACATGCTCGATAAAGTACTAA
ACTATACAAAGTGCAGCTTTAACACTGCCCTTTATTGGTGTGTAAATGCA
AAGAATTCACTGCATAACGCAAATGGATTTACCCCATACCAATTATCCAT
TAGAACGAATCCACAGTTGCCTTCACTAATGGATGATAAAGCACCAGCTT
TATCAGGGAAACCAGCCACACAAATGATGAAAGAAAACCTTGAAGTACTT
CACAAAGCAAGAGAAGCCTTTATTGCAAGCGAACACTCAGAGAGGATATG
TCGCGCTTTAGCCCACAACATTAGGACTTCAGGAGAAATCAAGTACCTTA
CAGGAGATCGTGTATACTACAAGAGAAATGATAGCAAGGAATGGAAGGGT
CCTGGAACTGTGCTTGGTCAGGATGGTCAGCAAATTCTATTCAAACATGG
GAGTTACTATGTTCGTGTTCATCCTTGTTGCGCTAAATTGGTATGAAAAC
GACAAACCTATTCATTCAGAGGAGAAAACGGAAACAGAGACAACCAGTTT
ACCACTGAAGAAAGACTCCCTAAGATTTAACATTCCAAACGTGAGCCATC
AATCATCAGAAGAATCAGAATCAGACGTAGAAGATTCTCTAACACCCNAA
CGACGACCAGTACCACTGAAGAAAGACTCCCAAGATTAAACATTCCAAAC
GTGAGCCATCAATCATCAGAAGAATCAGAATCAGACGTAGAAGATTCTCT
AACACCCATCAATAATGATCCACCAACTACACCTACCCAGCAATTACAAA
CTCAATCCACTTCAGTTGAGACACACAATCCTCCTCAAAAGGAACAACTG
AAAC Run BLAST on NCBI protein sequence of TCONS_00025949-protein >TCONS_00025949-protein ID=TCONS_00025949-protein|Name=TCONS_00025949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MASKFLETVAMDLKFYNKKIILHLIDMCTRLSAAMTIKDKNPTTVIEAIL
KTWISVYGSCEKFLVDNGGEFANEELINLAEQFGITIKTTAAESPWSNGI
VERHNQTLSNMLDKVLNYTKCSFNTALYWCVNAKNSLHNANGFTPYQLSI
RTNPQLPSLMDDKAPALSGKPATQMMKENLEVLHKAREAFIASEHSERIC
RALAHNIRTSGEIKYLTGDRVYYKRNDSKEWKGPGTVLGQDGQQILFKHG
SYYVRVHPCCAKLV Run BLAST on NCBI transcript from alignment at sc0000555:117050..118603 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025949 ID=TCONS_00025949|Name=TCONS_00025949|organism=Clytia hemisphaerica|type=transcript|length=1554bp|location=Sequence derived from alignment at sc0000555:117050..118603 (Clytia hemisphaerica)
GTTTCAGTTGTTCCTTTTGAGGAGGATTGTGTGTCTCAACTGAAGTGGAT
TGAGTTTGTAATTGCTGGGTAGGTGTAGTTGGTGGATCATTATTGATGGG
TGTTAGAGAATCTTCTACGTCTGATTCTGATTCTTCTGATGATTGATGGC
TCACGTTTGGAATGTTTAATCTTGGGAGTCTTTCTTCAGTGGTACTGGTC
GTCGTTNGGGTGTTAGAGAATCTTCTACGTCTGATTCTGATTCTTCTGAT
GATTGATGGCTCACGTTTGGAATGTTAAATCTTAGGGAGTCTTTCTTCAG
TGGTAAACTGGTTGTCTCTGTTTCCGTTTTCTCCTCTGAATGAATAGGTT
TGTCGTTTTCATACCAATTTAGCGCAACAAGGATGAACACGAACATAGTA
ACTCCCATGTTTGAATAGAATTTGCTGACCATCCTGACCAAGCACAGTTC
CAGGACCCTTCCATTCCTTGCTATCATTTCTCTTGTAGTATACACGATCT
CCTGTAAGGTACTTGATTTCTCCTGAAGTCCTAATGTTGTGGGCTAAAGC
GCGACATATCCTCTCTGAGTGTTCGCTTGCAATAAAGGCTTCTCTTGCTT
TGTGAAGTACTTCAAGGTTTTCTTTCATCATTTGTGTGGCTGGTTTCCCT
GATAAAGCTGGTGCTTTATCATCCATTAGTGAAGGCAACTGTGGATTCGT
TCTAATGGATAATTGGTATGGGGTAAATCCATTTGCGTTATGCAGTGAAT
TCTTTGCATTTACACACCAATAAAGGGCAGTGTTAAAGCTGCACTTTGTA
TAGTTTAGTACTTTATCGAGCATGTTGGAAAGTGTTTGATTATGTCTTTC
TACAATGCCATTTGACCAGGGAGATTCAGCCGCAGTAGTCTTTATCGTGA
TTCCAAACTGTTCTGCTAGATTGATTAATTCCTCATTTGCAAACTCACCT
CCATTATCCACGAGGAACTTCTCACATGAGCCATAGACGGATATCCACGT
TTTTAATATTGCCTCAATAACTGTGGTTGGATTTTTATCCTTTATAGTCA
TTGCAGCTGACAAGCGAGTACACATATCGATAAGATGGAGAATTATTTTC
TTATTGTAGAATTTCAAGTCCATGGCAACTGTTTCGAGAAATTTTGATGC
CATGGGTAATCCAACAACAGGACGAGGTGGTGATCTTCTGTAGATTTGGC
ATGTTGTACATTCCTTGTCTACTCTTTTGATTTCTGATATCCACTTCTTG
TTGTTACTCCATGGTGCCCCTGCTTTATTGATAAGAGACAAGAGTTGAGA
GATGGTTGAGCAAACTGCCGGTGAAGTTTTTCAGCAATTGAGGACATGTT
TTTGTCCTCTTtccaaatgaaaacaaaattacaTTCAAAAGGCTTGTCTA
TTGAAGCAATTATTTGACGTGGTTTGGTCAGAGGAATGGTATCATGTCCA
CTTGAAGTTTTTGCTAGGTGAACAGTTTCCCCCAATGCATTTGCACTGTC
ATTCTGAAAATCCAGGATCATGTCAGCTCTTTTCATGAATGATTTTGATA
GTAA Coding sequence (CDS) from alignment at sc0000555:117050..118603 >TCONS_00025949 ID=TCONS_00025949|Name=TCONS_00025949|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at sc0000555:117050..118603 (Clytia hemisphaerica)
TCATACCAATTTAGCGCAACAAGGATGAACACGAACATAGTAACTCCCAT
GTTTGAATAGAATTTGCTGACCATCCTGACCAAGCACAGTTCCAGGACCC
TTCCATTCCTTGCTATCATTTCTCTTGTAGTATACACGATCTCCTGTAAG
GTACTTGATTTCTCCTGAAGTCCTAATGTTGTGGGCTAAAGCGCGACATA
TCCTCTCTGAGTGTTCGCTTGCAATAAAGGCTTCTCTTGCTTTGTGAAGT
ACTTCAAGGTTTTCTTTCATCATTTGTGTGGCTGGTTTCCCTGATAAAGC
TGGTGCTTTATCATCCATTAGTGAAGGCAACTGTGGATTCGTTCTAATGG
ATAATTGGTATGGGGTAAATCCATTTGCGTTATGCAGTGAATTCTTTGCA
TTTACACACCAATAAAGGGCAGTGTTAAAGCTGCACTTTGTATAGTTTAG
TACTTTATCGAGCATGTTGGAAAGTGTTTGATTATGTCTTTCTACAATGC
CATTTGACCAGGGAGATTCAGCCGCAGTAGTCTTTATCGTGATTCCAAAC
TGTTCTGCTAGATTGATTAATTCCTCATTTGCAAACTCACCTCCATTATC
CACGAGGAACTTCTCACATGAGCCATAGACGGATATCCACGTTTTTAATA
TTGCCTCAATAACTGTGGTTGGATTTTTATCCTTTATAGTCATTGCAGCT
GACAAGCGAGTACACATATCGATAAGATGGAGAATTATTTTCTTATTGTA
GAATTTCAAGTCCATGGCAACTGTTTCGAGAAATTTTGATGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025949-exon-sc0000555-1491911889:117050..118603 | TCONS_00025949-exon-sc0000555-1491911889:117050..118603 | Clytia hemisphaerica | exon |
| TCONS_00025949-exon-sc0000555-1510915933:117050..118603 | TCONS_00025949-exon-sc0000555-1510915933:117050..118603 | Clytia hemisphaerica | exon |
| TCONS_00025949-exon-sc0000555-1575043694:117050..118603 | TCONS_00025949-exon-sc0000555-1575043694:117050..118603 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000555 | supercontig | sc0000555:117050..118603 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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