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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025879 ID=TCONS_00025879|Name=TCONS_00025879|organism=Clytia hemisphaerica|type=transcript|length=1361bp
ccaccatcaagcatgattcaattgtctataaaacttttgcaattttgcaa
ccggaactttctatttcttttttccctaaacccatcccccatcaacaatc
aatgatgaaatttaatgcattttcgctaaccgctatattttcttaatgat
ttttttctccttattgctatctaagtttcatcatcaggtaggtccattca
gcatgttgcttgttcttattttttctctcTATCTATTTCCAGCCTGCGTA
CGTTGTTCATATATTTCCACCGTGTGATTTTGCTCAAACACATTTATTGC
GAGTTGCACCTGATTTACTGGACAGTGCAGTTGAGAGTGGCCATCTTATG
GTGCTTGTAACTCTGGTATGATATGGAGAGAATCACTAACATCTTTAACA
TTCAActtggaaatattttcaatagtATTATATGAAGCTATAATACAATA
ATTTACAACATTGTAATACGATAGTATCGAGATTGAATTACCATAGTACT
TCGGAACGAACCGTTGTTGTGCATATTTTGCGtataaatgaaatgaaatc
gTCGAGATTAAAAGTACACTAAACTACAGCACAGTACGAAGAAGAACGAT
AAACGACCCAGAAAGTGAAGAGCGCTGTAAGCCGCCATTTTGGTGGAAAT
GTGAacgaaaatgaataaaatcgaGTGTTAAAATTTCAAGAACATATCTA
AAGTTTTTCTGTATAGAATTCGGAAGTAAAAATCGTACCTCGAAGAGGAG
GAAgtttatttctttcaaatctgTAGAATCTTCAGAAGAGCTGAATGAGG
ATGAGTATACAGTGCAAACTACCCTACTCAAGATTTGGTTTCTCCGATGA
ACGTAGTTGAACGACTTTCAGATTTTACGCTCTAACGTATTTTTATATGG
AATTTGAAGTATCTGAACTTTTATACTTGTTTTGGTATATAGCGGATATT
TTGATAGATCCAAAGATTATTGAAAGCATTGAAAAAGACTGCAATTCATG
ACTTGAACACGTGGAGTTCTCATCTAAGAGCGATATTTTTAATGAACATT
GCTAATGTAACctttagatttttgtaaaatttgatttttttttaacaaag
ctGGATTTAAATCGATTCTTTAGTGTCCTTGTACAGACTGCATAGTTGGT
CTTTTGTTACCGTTCTGTTCGGTGCAAGtgttaatcaaatcaaaaagata
ttttgaaGCAACCAAAGATTGTTTTTGATTGTCCGTAtggaattttacaa
atttttattttacatttttttataatttatcaatttactttatattttat
tatcatACCAGTATCGCCTTTAATTATGTTCGTTctaagaataaaaaact
tttgtaTAGAG Run BLAST on NCBI transcript from alignment at sc0000550:210884..212354+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025879 ID=TCONS_00025879|Name=TCONS_00025879|organism=Clytia hemisphaerica|type=transcript|length=1471bp|location=Sequence derived from alignment at sc0000550:210884..212354+ (Clytia hemisphaerica)
ccaccatcaagcatgattcaattgtctataaaacttttgcaattttgcaa
ccggaactttctatttcttttttccctaaacccatcccccatcaacaatc
aatgatgaaatttaatgcattttcgctaaccgctatattttcttaatgat
ttttttctccttattgctatctaagtttcatcatcaggtaggtccattca
gcatgttgcttgttcttattttttctctcTATCTATTTCCAGCCTGCGTA
CGTTGTTCATATATTTCCACCGTGTGATTTTGCTCAAACACATTTATTGC
GAGTTGCACCTGATTTACTGGACAGTGCAGTTGAGAGTGGCCATCTTATG
GTGCTTGTAACTCTGGTATGATATGGAGAGAATCACTAACATCTTTAACA
TTCAActtggaaatattttcaatagtATTATATGAAGCTATAATACAATA
ATTTACAACATCGTAATACGATAGTATCGAGACTGAATTACCATAGTACT
TCGGAACGAACCGTTTTTGTGCATATTTTGCGtataaatgaaatgaaatc
gTCGAGATTAANATACAACATTGTAATACGATAGTATCGAGATTGAATTA
CCATAGTACTTCGGAACGAACCGTTGTTGTGCATATTTTGCGtataaatg
aaatgaaatcgTCGAGATTAAAAGTACACTAAACTACAGCACAGTACGAA
GAAGAACGATAAACGACCCAGAAAGTGAAGAGCGCTGTAAGCCGCCATTT
TGGTGGAAATGTGAacgaaaatgaataaaatcgaGTGTTAAAATTTCAAG
AACATATCTAAAGTTTTTCTGTATAGAATTCGGAAGTAAAAATCGTACCT
CGAAGAGGAGGAAgtttatttctttcaaatctgTAGAATCTTCAGAAGAG
CTGAATGAGGATGAGTATACAGTGCAAACTACCCTACTCAAGATTTGGTT
TCTCCGATGAACGTAGTTGAACGACTTTCAGATTTTACGCTCTAACGTAT
TTTTATATGGAATTTGAAGTATCTGAACTTTTATACTTGTTTTGGTATAT
AGCGGATATTTTGATAGATCCAAAGATTATTGAAAGCATTGAAAAAGACT
GCAATTCATGACTTGAACACGTGGAGTTCTCATCTAAGAGCGATATTTTT
AATGAACATTGCTAATGTAACctttagatttttgtaaaatttgatttttt
tttaacaaagctGGATTTAAATCGATTCTTTAGTGTCCTTGTACAGACTG
CATAGTTGGTCTTTTGTTACCGTTCTGTTCGGTGCAAGtgttaatcaaat
caaaaagatattttgaaGCAACCAAAGATTGTTTTTGATTGTCCGTAtgg
aattttacaaatttttattttacatttttttataatttatcaatttactt
tatattttattatcatACCAGTATCGCCTTTAATTATGTTCGTTctaaga
ataaaaaacttttgtaTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025879-exon-sc0000550-1491911889:210884..211342 | TCONS_00025879-exon-sc0000550-1491911889:210884..211342 | Clytia hemisphaerica | exon |
| TCONS_00025879-exon-sc0000550-1510915933:210884..211342 | TCONS_00025879-exon-sc0000550-1510915933:210884..211342 | Clytia hemisphaerica | exon |
| TCONS_00025879-exon-sc0000550-1575043694:210884..211342 | TCONS_00025879-exon-sc0000550-1575043694:210884..211342 | Clytia hemisphaerica | exon |
| TCONS_00025879-exon-sc0000550-1491911889:211453..212354 | TCONS_00025879-exon-sc0000550-1491911889:211453..212354 | Clytia hemisphaerica | exon |
| TCONS_00025879-exon-sc0000550-1510915933:211453..212354 | TCONS_00025879-exon-sc0000550-1510915933:211453..212354 | Clytia hemisphaerica | exon |
| TCONS_00025879-exon-sc0000550-1575043694:211453..212354 | TCONS_00025879-exon-sc0000550-1575043694:211453..212354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000550 | supercontig | sc0000550:210884..212354 + |
Blast
The following BLAST results are available for this feature:
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