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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025877 ID=TCONS_00025877|Name=TCONS_00025877|organism=Clytia hemisphaerica|type=transcript|length=1646bp
ANGAACGATCGAATCCTGTACTAAAGCCTTTGCAGAAATGCACGGTAAAC
ACGTCAATGGAAGCAAGATTGTCGTTGATTACGCCAGCCCTGCATGTCGA
GAATCTTATTACAATCGAATGGAGAAACACGGCTACCTTGACCGCCGTCA
ACTAGAACGTTCACCCACGCCCCCTGATGTTCACGTTAATTACCCCAACG
CCACACGAACGGGCGGTTCTATATCTAATAAAGTGTACCCTAACCGGGTA
TTTGATGATAAGGATAGGTTTTCAGATAATCGGTACGACCGGGATCAAAT
TCGGAACCGAGGATCGCCGATTCCGAGACGACGCTCACCGAGTCCCCTTG
CAGATTCTTATGATTCTCGGAAACGAAAACTAAGTGCCGATATTATGGCG
AATTCTGATGGAGAGagcgaaaagaagaagaaaaagaagaagaagaaatc
aaaagatGAAGAGGAGAAAAGGTTGAGGAAGGAACGAAAGAAGGCTGAAA
AGGCAAAGAAAAAAGCCgagaagaaagagaagaaattgaagaaattacGT
GAGTTGGAAGAGAAACGTGCTGCCGAAGAAAAAGCCAATACTGCTCCAAC
ATTGTTAAATGACCGAGCACAAGAAAGCGACCATAAAGAAAATGACTCGG
CACATGAAAACGGAGGTATTTCAGACGTTTCTCAAGTGACGGAACCGAAC
GAAGGTGCAAGTGAGTTAAGCGAAGCTGAGATGACAAACGAAGATAAACC
AAAAGAAACGTCGGTTGTTCCCGATGAGAAACCTCCGGAGACGACCGAGT
CTGTGATCGAGTCCGGTGAAATTAAGGATCCCGAAAAAGAAGAAcgagag
aaaaaaatcaccGAGGATTCCTCCGACTCTTCCGATTCAAGTTCGTCTTC
TTCCGATTCGGATAGTGATGATAGTTCTGACGACGATCGCTCTGCAAGAA
AGCGAACAAGTAAGACCCGATCATTTGAACCGAAATCTTATCGGCAAGAA
AGTGACGGAAGAAGCGATTACCGCGAAGGCAGTCGTGAATCATTTCGAGG
CTCAAAATACTACACAAGCCGGAGTTCGTCACAAAACGACCGCTCACCGA
GAACAAAGTCGCGGTCGCGCTCGCCGTATCGTCGAGAACCGTCGTACGAT
CGTAGCCATGACTCACCCCGTTACTCTCGCACTGAATCAGTTCGAAATAT
CGAAAAACCGAAAAGTTCACCTCCGCCCTCAGGCACACCCGGTGAGAGAG
CTCCCTCCAGGAATGCGGATACGTTGATGGATCTTTTACGGCGTTTTCCG
GTGATGTGGCAAGGGTTGCTGGGTTTGAAAAATGAGACTGCTGCTGTCCA
AATGCATTTCCTCTCAGGTAACTTGCAACTTGTTGACCAATCGTTACCGA
GATCTGCACAGCCAAATGAAGTTCCACCACCATTGCGAATTTCACNCAAT
ATTTGaccatcatcactgtgaaaaaacgtttcaaaaatattcattcaatc
aaaagatatcacaCAAAGTTTGTTATTGGTTGACTGACAATAGcctgttt
ttttttcgttttttactactttatagagtcaaccagtaataatttttgtt
tgatatcttttgattgaatgaatatttttgaaaaatcttttaacag Run BLAST on NCBI transcript from alignment at sc0000550:200884..207887+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025877 ID=TCONS_00025877|Name=TCONS_00025877|organism=Clytia hemisphaerica|type=transcript|length=7004bp|location=Sequence derived from alignment at sc0000550:200884..207887+ (Clytia hemisphaerica)
ANGAACGATCGAATCCTGTACTAAAGCCTTTGCAGAAATGCACGGTAAAC
ACGTCAATGGAAGCAAGATTGTCGTGAGtgattttttatctgttttggca
aaaagtagtttttcccaattttttaaaatgtGATTTCATTTTGCATAAGA
TTTCACTTCCCGTACTAGGATTCCGCTGTCTTTCCTGAGATTCttccgct
atttttcccgggATAACCGGCATGAGATTAGAAAGGGTTTTTTCTAAAGT
TCTTGTTCTTGTTCtaaaaatcttgtgtttacttacGAAACGGCGTGACT
Ttcggaagctcatttttcaaaagattttgtcttcttgttttgtctatttt
tggacctacctggaggtcctataaattaacctttgtccgtccgtccgttc
gtccgtccgtctgttaccagcttttctcaggattggctcattagtttttt
ctgatttttggcacaatgatgcaaaatggcaatNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNggaaattccctttaaccaaataagaaaatat
agcttttctcaatgttgactcattattttttttgattttttgcacaatga
tgcaaaatggcaatgcctaaaacgtgacgaagcccgattttcgaaaaaaa
acatatttgggcaaatttgggccaaaaactgcctaaaaatagcgtttttt
ggactttgtgcaaaatcctgtcattacttttttctgattttttgtacaaa
gatggagggcaagattctctaaagaatggctgaagtggtttttcccggaa
aattcttattcgtcttaaaaaacggattttcgtattttggggagattccc
tttaaccaaataagaaaatatagcttttctcaatgttgactcataggACA
TGTTCATAAATGGTGAGTAAAATGGAgacatttgaaaaattgcaaaaaat
agaaaatttaggATAATTTTGTAACAGATCAATTTTTATTAACCAAAATT
TCACAGAAGCTGACAATTACCATTATCCCCAGTGTGAAAGTGGTTTGGGG
ACTTATTATACATTATAAGGCCAGTTATTGGTAAAAATGTAAcaattgta
acttttttatcAGAGAATAAAAATTATGTTATTCAAATAGTTTAAACTAG
CTGGATTGGCTAGGTTAATCTGTTTTCGAACCAAAAAATAATAAGGGGCA
ATAATGTAACATACTTCCCGGCCGAGAAAAAGGTAAAATAGTAACAtcgt
tgaaaaatataaaaaatctcttGAAGTATAAAATAATTCAAGCTAAGAAC
AAATGACTTTCTCTTATTTGGATTTGGGCTTGTACCAGTCATTACTTGTT
CATAGGACATTGTTTTTTACCTCAAAAAGGCCAAGATTTTGGTAAAAAAG
TAACAATTACGTGAACTTGCAAAGTTTCAGACTATAATTAACACATAGCT
TTTATataattcaaattattttaaaaggAAATGAGGACACTCAAGCTGAC
ACTGAAAGTGAAttagttttaaaatgttttaaaaatagaatatgCTTTCA
GTGgtaaaaaagtaacaaacaatataatattacgTTATAGTAAATTTGAT
ATGAAGAAGTTATACAAAGTTAACAAAACTAGTCATTTAAGGTCTAGGTA
ATAAATGTAAGCCAATGGCATTTTCTTTTGGACTTTATTCATTACCACTA
CTTATTTGTACATAGGGGATGTTTCTAATCCTAAAAAGGCcagaaatttg
gtaaaaatgtaTCTTAATCTAGAGCTTACGAAGTTTTATGACAAtgacaa
aaatagaaaaaaatgaaaaagtgttACTTTTTTACCAATATACAACCTct
taataacaaaaaattaacataaaaaCCTATGAACTTGGTTGCTTGTGGTA
TCATTATTTGTCTAAAGTGATCAAATGTGATTTCTTATAGCATTTAAAGG
TTTTCTGGATTAAAAATGTAACAGCTATGATATTTAGGCTATTATAGTGA
ATGTTTACTTGAGTGTTACAAAATTACCTTATTTGAACCTTTTTTCAAGT
TAAATTCTGAAACAATCAAATCTTTAACACATTTCAAATCATAATATGAC
AATGAACAATTTCAGTTTTTATAGTTTCTTTGACTTGGAGGTCCCAAAAa
gtaacaattttcaaaacttaaagtGTTACTATTTTATCAAATTGTTGCCA
TTGatgaataaaattcaaaactaaCGTCACTTGAGGTCTATATTATTATG
TGTAAAAATTTGGTGACCTTATTATAAGTTTTCAGAGAGTTCTAAAACTT
ATTATCATTTTGAGGATTTGTGGACTgttacttttttatcattttctctg
CCCTGAAAGAAAACCTTATATCTTTAGTTTTGATTACTCAATCATTGATA
CATTATTATCATAGGAATTCTGAGCTATCTGGCTTAACGACTGAATTGTT
TCTGGCCTCTTAggttttgttacatttttatcatagGTAAATTTGTAACC
CTCATTTCAAATGTCTCCAAAGGGGATAAATCTACTCACCATTTATGAAC
ATGTcccataatttttttctgattttttgcacaatgatgcaaattgacaa
tacctaaaatgtgacgaagaccaattttcaaaaaacatttttttccggcc
gaaaatgccggaaatatgccggaaaaactggttttttggcattttctcaa
gattttataattggttttttctgattttttgctcaaagaaagcagaagaa
agatgcgtattaacaattcccaaaacatggccgagttcgatttttgagaa
aaattgttTCCAGttaaaaatgccggaaatcgcaggaaatcgccgtgttt
gcagattttcattggattttttccttatattcatttctatgcttttttac
acaaaaacatttttgataacaatgctcaccatcaagcatgattcaattgt
caataaaactgaattttgggaccagaacttcctatttattttttccctac
aactgTTCCCTCTCctcccatcaacaatcaatgatgaatttattgtgttt
tgtattttcgctaagcgctatattttctgactgattttttttcatttttc
ttttcgcattgctatataactttcatcatcaggtaggtccattcagcatc
tagcttgttattcATGTTCTTGTCTTTAGGTTGATTACGCCAGCCCTGCA
TGTCGAGAATCTTATTACAATCGAATGGAGAAACACGGCTACCTTGACCG
CCGTCAACTAGAACGTTCACCCACGCCCCCTGATGTTCACGTTAATTACC
CCAACGCCACACGAACGGGCGGTTCTATATCTAATAAAGTGTACCCTAAC
CGGGTATTTGATGATAAGGATAGGTTTTCAGATAATCGGTACGACCGGGA
TCAAATTCGGAACCGAGGATCGCCGATTCCGAGACGACGCTCACCGAGTC
CCCTTGCAGATTCTTATGATTCTCGGAAACGAAAACTAAGTGCCGATATT
ATGGCGAATTCTGATGGAGAGagcgaaaagaagaagaaaaagaagaagaa
gaaatcaaaagatGAAGAGGAGAAAAGGTTGAGGAAGGAACGAAAGAAGG
CTGAAAAGGCAAAGAAAAAAGCCgagaagaaagagaagaaattgaagaaa
ttacGTGAGTTGGAAGAGAAACGTGCTGCCGAAGAAAAAGCCAATACTGC
TCCAACATTGTTAAATGACCGAGCACAAGAAAGCGACCATAAAGAAAATG
ACTCGGCACATGAAAACGGAGGTATTTCAGACGTTTCTCAAGTGACGGAA
CCGAACGAAGGTGCAAGTGAGTTAAGCGAAGCTGAGATGACAAACGAAGA
TAAACCAAAAGAAACGTCGGTTGTTCCCGATGAGAAACCTCCGGAGACGA
CCGAGTCTGTGATCGAGTCCGGTGAAATTAAGGATCCCGAAAAAGAAGAA
cgagagaaaaaaatcaccGAGGATTCCTCCGACTCTTCCGATTCAAGTTC
GTCTTCTTCCGATTCGGATAGTGATGATAGTTCTGACGACGATCGCTCTG
CAAGAAAGCGAACAAGTAAGACCCGATCATTTGAACCGAAATCTTATCGG
CAAGAAAGTGACGGAAGAAGCGATTACCGCGAAGGCAGTCGTGAATCATT
TCGAGGCTCAAAATACTACACAAGCCGGAGTTCGTCACAAAACGACCGCT
CACCGAGAACAAAGTCGCGGTCGCGCTCGCCGTATCGTCGAGAACCGTCG
TACGATCGTAGCCATGACTCACCCCGTTACTCTCGCACTGAATCAGTTCG
AAATATCGAAAAACCGAAAAGTTCACCTCCGCCCTCAGGCACACCCGGTG
AGAGAGCTCCCTCCAGGAATGCGGATACGTTGATGGATCTTTTACGGCGT
TTTCCGGTGATGTGGCAAGGGTTGCTGGGTTTGAAAAATGAGACTGCTGC
TGTCCAAATGCATTTCCTCTCAGGTAAATCTTTGTACTTTGTACCACCGT
AACTGCTTTGAGAAACTTTCACAAAATCGGGCTTAAAAGGACAGTTGTTA
TAGAACTTTGGAATACTTGCACTCGAAGACTAGCTATCATTTTACTATAG
ATATCATTTCATCTGGTCGCTTTAAGACCCAAAAACTTATAGGGATAATA
tgaaaatttttgctaaaaGAGTTTTGctataatttatttttaacgTCTGC
GTCTGtttctttctatttcttttacAAGGTAACTTGCAACTTGTTGACCA
ATCGTTACCGAGATCTGCACAGCCAAATGAAGTTCCACCACCATTGCGAA
TTTCACAACGAATGAAATTGGAGCCATCACAACTGGAAGGTGTAGATAAA
CGAATACAGGTACAATACAATTAANAGTTCTGACGACGATCGCTCTGCAA
GAAAGCGAACAAGTAAGACCCGATCATTTGAACCGAAATCTTATCGGCAA
GAAAGTGACGGAAGAAGCGATTACCGCGAAGGCAGTCGTGAATCATTTCG
AGGCTCAAAATACTACACAAGCCGGAGTTCGTCACAAAACGACCGCTCAC
CGAGAACAAAGTCGCGGTCGCGCTCGCCGTATCGTCGAGAACCGTCGTAC
GATCGTAGCCATGACTCACCCCGTTACTCTCGCACTGAATCAGTTCGAAA
TATCGAAAAACCGAAAAGTTCACCTCCGCCCTCAGGCACACCCGGTGAGA
GAGCTCCCTCCAGGAATGCGGATACGTTGATGGATCTTTTACGGCGTTTT
CCGGTGATGTGGCAAGGGTTGCTGGGTTTGAAAAATGAGACTGCTGCTGT
CCAAATGCATTTCCTCTCAGGTAAATCTTTGTACTTTGTACCACCGTAAC
TGCTTTGAGAAACTTTCACAAAATCGGGCTTAAAAGGACAGTTGTTATAG
AACTTTGGAATACTTGCACTCGAAGACTAGCTATCATTTTACTATAGATA
TCATTTCATCTGGTCGCTTTAAGACCCAAAAACTTATAGGGATAATAtga
aaatttttgctaaaaGAGTTTTGctataatttatttttaacgTCTGCGTC
TGtttctttctatttcttttacAAGGTAACTTGCAACTTGTTGACCAATC
GTTACCGAGATCTGCACAGCCAAATGAAGTTCCACCACCATTGCGAATTT
CACNCAATATTTGaccatcatcactgtgaaaaaacgtttcaaaaatattc
attcaatcaaaagatatcacaCAAAGTTTGTTATTGGTTGACTGACAATA
Gcctgtttttttttcgttttttactactttatagagtcaaccagtaataa
tttttgtttgatatcttttgattgaatgaatatttttgaaaaatctttta
acag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025877-exon-sc0000550-1491911889:200884..200956 | TCONS_00025877-exon-sc0000550-1491911889:200884..200956 | Clytia hemisphaerica | exon |
| TCONS_00025877-exon-sc0000550-1510915933:200884..200956 | TCONS_00025877-exon-sc0000550-1510915933:200884..200956 | Clytia hemisphaerica | exon |
| TCONS_00025877-exon-sc0000550-1575043694:200884..200956 | TCONS_00025877-exon-sc0000550-1575043694:200884..200956 | Clytia hemisphaerica | exon |
| TCONS_00025877-exon-sc0000550-1491911889:205213..206506 | TCONS_00025877-exon-sc0000550-1491911889:205213..206506 | Clytia hemisphaerica | exon |
| TCONS_00025877-exon-sc0000550-1510915933:205213..206506 | TCONS_00025877-exon-sc0000550-1510915933:205213..206506 | Clytia hemisphaerica | exon |
| TCONS_00025877-exon-sc0000550-1575043694:205213..206506 | TCONS_00025877-exon-sc0000550-1575043694:205213..206506 | Clytia hemisphaerica | exon |
| TCONS_00025877-exon-sc0000550-1491911889:207609..207887 | TCONS_00025877-exon-sc0000550-1491911889:207609..207887 | Clytia hemisphaerica | exon |
| TCONS_00025877-exon-sc0000550-1510915933:207609..207887 | TCONS_00025877-exon-sc0000550-1510915933:207609..207887 | Clytia hemisphaerica | exon |
| TCONS_00025877-exon-sc0000550-1575043694:207609..207887 | TCONS_00025877-exon-sc0000550-1575043694:207609..207887 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000550 | supercontig | sc0000550:200884..207887 + |
Blast
The following BLAST results are available for this feature:
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