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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025869 ID=TCONS_00025869|Name=TCONS_00025869|organism=Clytia hemisphaerica|type=transcript|length=1668bp
CATCAAAGAAAACCCGAGAACCTTCGCAGGTCTTCTTGCAGAACCATTCC
CTTTAGAGCGCATGCGTGGAATGCGTGGAGCACGAAGAGCTGCTTGGAGG
TTAAAAGTCTATAGGCTAGTCAACGACTTTTAATCGCGAATTCTGATTGG
CTTATTTTTAGCCGCAAAAATCTGATTGGTCAAATTTTTGCTGGaggaaa
ttcaaactcaaattcaaaacattgCACAAAAAGTTTGTATTATCGCGGCA
GCAGTGACCAGGTGACACACAAGTGGATTTCTTGCATTTTGTAACTTGTT
TATGATAATCAGAATGGGTGCTTATGTAGCTAAAGAGGAAGATGAAAGTC
TTGAAATTGCAACTCCACACTTTGAAAAATACGGCAATTTGGTATCCTCA
ACGAGTGACGATCCAAGGTCTCCTGCAATTGATGATGTAAAACGAACTCC
TCTTGTTTTTCGCGATCAAATAGAAGATCCACGTTCACCTCCCTCTGGAT
ACGAGCGAACACCTGTTTTTTCTATACCTGAGCCTGGCACTCCCAAAATG
AGGTTTAAGATGGACAATCTTGGCTTTGAAGATTCTCCTCTCTCCAGTGT
TACTGAGAAACTGTCAGCCATAAGAATCAGCGAAAAGCAAAATGACACAA
GTGAAGACATCAGCAATGAAAATCTTACACCAGAAATGGATGCACAATAC
TTGGAAGATGATATTCCAAAGGGCATTGACGAAATCGAGTCACCGATATC
TTCCAAAACAAATAGTGAATTGTCTCCACTTATCAAagataaaaatgtga
aaaagttacGAAACCGGAAAAGTAATGCatctaataaaaacaaaaacgct
TTGTTGAAACAAGCTTTATTCAAGCCATATGTGGATAACGAATCAAGTGA
AATGAAAAGCTCAATAAAATATGACACTGTCAATAAGCAGCGCAGACCTT
TATCCAACAAGAGTATTAATTTAGTACTAAATAACCCTAATGTTGATGAT
GCTAGTACTGACATAAAGAAAGACAAACTACAACcttttagttttgaaaa
agcTATTGATAAGGAAAATATGCCTGTTCTTTGAATGAGAGCATAATCAA
TTCGATGGGCTGTATCTGGCTGTATAAATATGGCAtacttgtattttttt
tttgtgattgatatAGCAGAAAGTGTATCCTTTTCcatgaaaattttata
tattataattaATTTTGGGCTAACCTATTTAAACCCATAGCTGCATTGAA
AGGATTGATTTTACCAGGATTGGATGGTGTTATATGTTATACCCTGGAAA
AGTCAGACCTTGTCCTTGCAATGATTGTCACTGAGGTCGTTGTTCCTCTT
GAAATATCATCAGAAATGTCCTCTGGgcttaatttttcttataaccATAG
ATTTGTATCATCTTTTAGCATTTTAAGTATTTTGGATTAGcaatggtttt
tttttttgatttgaaacgtAGAAgagcaattttgaaattaaaataacgat
attttaaaaaaacttccaaggtatgtttttaaaatatgGGTGATAAAAAT
AATGTTTGCACAATGATTGCAATTATTGTCTTAAGTTACTGTTGTATATT
ATTATATcatttattgaaaaacaatatCATCTATTATTAATTTTGTATAT
AAAATAGATAAATAAAAG Run BLAST on NCBI protein sequence of TCONS_00025869-protein >TCONS_00025869-protein ID=TCONS_00025869-protein|Name=TCONS_00025869-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MIIRMGAYVAKEEDESLEIATPHFEKYGNLVSSTSDDPRSPAIDDVKRTP
LVFRDQIEDPRSPPSGYERTPVFSIPEPGTPKMRFKMDNLGFEDSPLSSV
TEKLSAIRISEKQNDTSEDISNENLTPEMDAQYLEDDIPKGIDEIESPIS
SKTNSELSPLIKDKNVKKLRNRKSNASNKNKNALLKQALFKPYVDNESSE
MKSSIKYDTVNKQRRPLSNKSINLVLNNPNVDDASTDIKKDKLQPFSFEK
AIDKENMPVL Run BLAST on NCBI transcript from alignment at sc0000550:179075..185396+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025869 ID=TCONS_00025869|Name=TCONS_00025869|organism=Clytia hemisphaerica|type=transcript|length=6322bp|location=Sequence derived from alignment at sc0000550:179075..185396+ (Clytia hemisphaerica)
CATCAAAGAAAACCCGAGAACCTTCGCAGGTCTTCTTGCAGAACCATTCC
CTTTAGAGCGCATGCGTGGAATGCGTGGAGCACGAAGAGCTGCTTGGAGG
TTAAAAGTCTATAGGCTAGTCAACGACTTTTAATCGCGAATTCTGATTGG
CTTATTTTTAGCCGCAAAAATCTGATTGGTCAAATTTTTGCTGGaggaaa
ttcaaactcaaattcaaaacattgCACAAAAAGTTTGTATTATCGCGGCA
GCAGTGACCAGGTGACACACAAGTTNAAACATTGGACCAAAAGTTTGTAT
TATCGCGGCAGTATAGTGACCAGCAGGACCAGGTGGATTTCTTGCATTTT
GTAACTTGTTTATGATAATCAGAATGGGTGCTTATGTAGCTAAAGAGGAA
GATGAAAGTCTTGAAATTGCAACTCCACACTTTGAAAAATACGGCAATTT
GGTATCCTCAACGAGTGACGATCCAAGGTCTCCTGCAATTGATGATGTAA
AACGAACTCCTCTTGTTTTTCGCGATCAAATAGAAGATCCACGTTCACCT
CCCTCTGGATACGAGCGAACACCTGTTTTTTCTATACCTGAGCCTGGCAC
TCCCAAAATGAGGTAATGCTCATAGTATAGTTATTTAACTGATACTGCTA
CTAGGTAGATACTAGGTcaattttttaacgttttcaagcacttttttatt
caattgagccttagctaacttttgatctaatgaatcgaatttgatAAATG
ATTTGTCAAAAtgtaagtttatctttcttctttccaatgaaataccgtga
gattgggtaacttgcatcagtggaggctaacatacatagccctcaaatga
aagacctggctggtcaggcggcaatcacaaatatcttcatttcgcgccCT
CGTTGGGTCtagaaagtgagtcggtcggtcggtcgtaaaaattttcgggt
ttccatttttccatccatttttagAGTGCATTCTTGGAGAAAACTGCCAG
CCATAGCCAAAACAATCgcgtgtaatgggtggtttaaaattatgaccttt
gaacactgtgacctccgaccccaaaatggcacatgtaatgataaacaaag
tcaaaatgctgcgaatgcgctagaaatcgctcgcaaaaaatcggcaataa
taaaatttttgaacgaaggaaaagtcattgacagaaaaatcccgacaaat
ttaccgactcaccgactcaattttactcaattttcaagagtcggtcgggt
gacgcgaaacgaagatatttgtgattgccgcctcattaaaatacaaagtt
aaatcaaaacaaaaatggtagagtagagctgcgcgcggagctgcatagtt
gtattttaatgaccagccaggtctttcatttgagggctatgcatgttagc
ctccactgatgcaagttacccaatctcatggTAGGAATTGTTCTTtggaa
atttttagatttcaagaaaattagtgTTAAACCAGACGtaaattaatcga
accaatcgaacggtatttttaatcgaactttgtcgaacttaatcgaactt
tgttggccgattaatgttcgactaagttcggttgtcaaactttaatcgaa
tactcacaaatttctcaaaatacaaagttcgattaagttcgattactgaA
ATCAACTCCCCGGAACCCCGGTCgagacccccaggggccgtccacgATGG
TACCCAAATGAggtcatttttcccaatttttgccaattttcaatttttgc
cggcttttgacgacgCTTTGAGGACTCCcaccctcacatccccctgacca
gtgggcaccaatCGGAccccgggacccccaggggccgtccacggtTAGTA
tatacccaaaggaggtcattttttgttgtccagacggtgtcaatcgaaca
acttcgaacaaaaatcgcaattgaacgtaatcgaacgcgatcgaataatt
gtgatttgattgtcgaacgtaatcgaatctcaatcgtaatcctgggtaat
attcgattgtgttcgagtaaggttagattggttcaattgatagttgacta
tgttcgattgctttgattgattgtcaattacattcgattTCGTTTGATta
cgatagaccttttttcaaagaggacgtcctattgaataattatgtagtcc
agccataaaaacaatgatagagccatgcataattactgtatcatgcatat
tgtaataatcatgcatggttttatcattgtttttctgctggactacatat
attatgttcgatgagtttgattgcaattaaaataaattggatcactccat
tagagcatagaccttttttcaaagttgtcgAACTTTTTCGAacggagttt
tttgtcgaatttgtcgaacctttcttgttgtcgaactttatcgaacggtg
ttttttgtcgaatttgtcgaaaATTTCTCATTGtcaaactttgtcgaact
ttaatatgttttgtcgaacttaatcgaatactcacaattttagcgacttt
tgaaaagtttgattaaagaatttaatcgaacttttgtcgttcgattaagt
ttgacaaagttcgattagttcggttatcgaactgttcgattaattaGTCT
GGGTTAAAGAGAGAAACCTTTTTGTGgggtggcacacccggtataatATA
TAAAGGAAAATAAACAAGCAATTCCTTCAAAAATCATTCAATAATGTTAG
AAAAATGCATTGTCAAAAAGGGTTAAGATTTTGCAGGCCACTGTGAAATT
GTTTTGTGTGTTTCTTTTTATCACAAACAATTGGCATATTTTTCATTCAT
GTTTTGAAGAGCCTTAGAGTGACAGAAAAGGCCATAGAcacctttttttt
aagaatatcttCTGGAAAATAGTGTGCCACAAATGgcttaccatcaactg
ctctaacttgagactatctgacaaaacatgggatggctatttggccacca
tttcaccgaacctccaaagtcatttgatttggaGTTAATGAACAGCGTAT
TAAAAGATAATGATTCTCTACTATCGGCATCCAGTCATTttgaaagttaa
aaagggcatgctatcagtgaaagttattgttaCATACCgttaactgctct
aacttgggacgattggtccaAAAATgtgactgttgcatatctggtctgta
ttttcacttactgtaaaatcaaaagagaaattgtgtatttttcgtcgttc
cttaactcaaatcaaatgactttggaggtttggtgaaatggtggccgaat
tgccatcccatgttttgtcaaatagtcccaagttagagcagttgacagta
ttatgacagaaagtatgattgataagcTTAGTGGAGTTcagtggagttat
caaaacaaatttattgtcaaagagatttaacagtaagtgaaaatacaggc
cagatatcaacagtcccatgttttgaccaatcgtcccaagttagagcagt
tgacggtataccgtgagtggtcctaaatcggatggggtctttcaaaataa
aaatcatttgaaagatttttataaaaagtttatttcactgaagattgcca
tcctggatggcatgaaactttgagtatgaaagcaacttaaattgttttct
ttaatcaAACCAGAATATcttctaccttaagggaagaaatttttgcggga
tGGCTGAAAAAGTCTTTTCGtaaggaatttaatttggcgaatcaGGGAAA
AATCTAATTTTGGCAAGAATTTGATTTGGCAAATGGCGGATTTTAAAATC
CGAAATTAGGATGAAACATTGATATCGGGggaaaattgtgaaaatttgCG
GGAATTTAGATTTGGCAGATTTCAGACGATACCCTTAAGGTATAATAATA
CCaaggtgaaaattggccaaattgtaAGAATACCAAGGCTCAAAATAAAG
ATTtcaattgggtcggacaatatGTCCGATCAgtgttgctttagcttgaa
aattatgattttttggtCGGACAAGGagctatttgggtcggacaatgtcc
gatgtccgaccgctATTTCAAGCCCTGAAATACCTCTAGGGTTTAACAGA
TTTTGATAGAGTAAGAATACAGTCCTTTTGTATTTGattttaacagaaaa
aattGGGTTTTTGATAGGCTTGATTTGAAACTTTAAAGGCAGAAATATAT
AATTTTAGCTACCAATGTGCACACTAAAGTCTCAAACTCTCGAATTGATC
ATTTTTTGTGTTTGTATCAGTTTGTATAAAAGTCTAATAAAAGTAATGtg
atgctgtaagaatatttcaccctcaattttggcaatttcttaagaatact
tgaccctcatccaaagtacactattcttataaaaaagcatgtattcCAAC
TATGTCTGACACTCAACACATGACACATAAATACCCTTTAAtaactacaa
tcagtgccataatatattgggacttttggctaatttaccatttttcgaaa
attgaagttcgagcgagaatgtcaatttcaggccttcaacttaaTTTTAT
CGactatttcgatctgggagggNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtactggaccatt
tttgaacttttggatcctcagatcctaaggtcataagtcttaagtctagc
gttaaaactcagagttaaaactctacccttccagcCTACTTTAGAGCgtt
tacaaatcgattgtggtttcaaaacaccccggtgaatttccctttcgTGA
CTGATTGTAGTTTGCTGATAAAAATTTGTATCTtaagtctgttccaaaaa
aattgacagtcTGCAACCTTTCATACATTACtcttgagaaaatattttga
tttatatttttctgaaacttGGAACTTCACTGATTTCAGATATGTTTTCA
AGTCTTTCATAGCTTTTTTAGAGCAAAAGTTACAGCTCTTCAAAAGTAgg
ctaaaaatagcaaaaaatggGCAAAATTGAGGGCTGTGACTTTTGATCCA
AGAAGCAATATTAAAAActtgtaaattaaaattgatgaataagcaaaCAT
TATCACTCTTtgtattcaaaaacaaaaccttgaatttctatttttatcca
ttttagGTTTAAGATGGACAATCTTGGCTTTGAAGATTCTCCTCTCTCCA
GTGTTACTGAGAAACTGTCAGCCATAAGAATCAGCGAAAAGCAAAATGAC
ACAAGTGAAGACATCAGCAATGAAAATCTTACACCAGAAATGGATGCACA
ATACTTGGAAGATGATATTCCAAAGGGCATTGACGAAATCGAGTCACCGA
TATCTTCCAAAACAAATAGTGAATTGTCTCCACTTATCAAagataaaaat
gtgaaaaagttacGAAACCGGAAAAGTAATGCatctaataaaaacaaaaa
cgctTTGTTGAAACAAGCTTTATTCAAGCCATATGTGGATAACGAATCAA
GTGAAATGAAAAGCTCAATAAAATATGACACTGTCAATAAGCAGCGCAGA
CCTTTATCCAACAAGAGTATTAATTTAGTACTAAATAACCCTAATGTTGA
TGATGCTAGTACTGACATAAAGAAAGACAAACTACAACcttttagttttg
aaaaagcTATTGATAAGGAAAATATGCCTGTTCTTTGAATGAGAGCATAA
TCAATTCGATGGGCTGTATCTGGCTGTATAAATATGGCAtacttgtattt
tttttttgtgattgatatAGCAGAAAGTGTATCCTTTTCcatgaaaattt
tatatattataattaATTTTGGGCTAACCTATTTAAACCCATAGCTGCAT
TGAAAGGATTGATTTTACCAGGATTGGATGGTGTTATATGTTATACCCTG
GAAAAGTCAGACCTTGTCCTTGCAATGATTGTCACTGAGGTCGTTGTTCC
TCTTGAAATATCATCAGAAATGTCCTCTGGgcttaatttttcttataacc
ATAGATTTGTATCATCTTTTAGCATTTTAAGTATTTTGGATTAGcaatgg
tttttttttttgatttgaaacgtAGAAgagcaattttgaaattaaaataa
cgatattttaaaaaaacttccaaggtatgtttttaaaatatgGGTGATAA
AAATAATGTTTGCACAATGATTGCAATTATTGTCTTAAGTTACTGTTGTA
TATTATTATATcatttattgaaaaacaatatCATCTATTATTAATTTTGT
ATATAAAATAGATAAATAAAAG Coding sequence (CDS) from alignment at sc0000550:179075..185396+ >TCONS_00025869 ID=TCONS_00025869|Name=TCONS_00025869|organism=Clytia hemisphaerica|type=CDS|length=1566bp|location=Sequence derived from alignment at sc0000550:179075..185396+ (Clytia hemisphaerica)
ATGATAATCAGAATGGGTGCTTATGTAGCTAAAGAGGAAGATGAAAGTCT
TGAAATTGCAACTCCACACTTTGAAAAATACGGCAATTTGGTATCCTCAA
CGAGTGACGATCCAAGGTCTCCTGCAATTGATGATGTAAAACGAACTCCT
CTTGTTTTTCGCGATCAAATAGAAGATCCACGTTCACCTCCCTCTGGATA
CGAGCGAACACCTGTTTTTTCTATACCTGAGCCTGGCACTCCCAAAATGA
GGTTTAAGATGGACAATCTTGGCTTTGAAGATTCTCCTCTCTCCAGTGTT
ACTGAGAAACTGTCAGCCATAAGAATCAGCGAAAAGCAAAATGACACAAG
TGAAGACATCAGCAATGAAAATCTTACACCAGAAATGGATGCACAATACT
TGGAAGATGATATTCCAAAGGGCATTGACGAAATCGAGTCACCGATATCT
TCCAAAACAAATAGTGAATTGTCTCCACTTATCAAagataaaaatgtgaa
aaagttacGAAACCGGAAAAGTAATGCatctaataaaaacaaaaacgctT
TGTTGAAACAAGCTTTATTCAAGCCATATGTGGATAACGAATCAAGTGAA
ATGAAAAGCTCAATAAAATATGACACTGTCAATAAGCAGCGCAGACCTTT
ATCCAACAAGAGTATTAATTTAGTACTAAATAACCCTAATGTTGATGATG
CTAGTACTGACATAAAGAAAGACAAACTACAACcttttagttttgaaaaa
gcTATTGATAAGGAAAATATGCCTGTTCTTTGAATGATAATCAGAATGGG
TGCTTATGTAGCTAAAGAGGAAGATGAAAGTCTTGAAATTGCAACTCCAC
ACTTTGAAAAATACGGCAATTTGGTATCCTCAACGAGTGACGATCCAAGG
TCTCCTGCAATTGATGATGTAAAACGAACTCCTCTTGTTTTTCGCGATCA
AATAGAAGATCCACGTTCACCTCCCTCTGGATACGAGCGAACACCTGTTT
TTTCTATACCTGAGCCTGGCACTCCCAAAATGAGGTTTAAGATGGACAAT
CTTGGCTTTGAAGATTCTCCTCTCTCCAGTGTTACTGAGAAACTGTCAGC
CATAAGAATCAGCGAAAAGCAAAATGACACAAGTGAAGACATCAGCAATG
AAAATCTTACACCAGAAATGGATGCACAATACTTGGAAGATGATATTCCA
AAGGGCATTGACGAAATCGAGTCACCGATATCTTCCAAAACAAATAGTGA
ATTGTCTCCACTTATCAAagataaaaatgtgaaaaagttacGAAACCGGA
AAAGTAATGCatctaataaaaacaaaaacgctTTGTTGAAACAAGCTTTA
TTCAAGCCATATGTGGATAACGAATCAAGTGAAATGAAAAGCTCAATAAA
ATATGACACTGTCAATAAGCAGCGCAGACCTTTATCCAACAAGAGTATTA
ATTTAGTACTAAATAACCCTAATGTTGATGATGCTAGTACTGACATAAAG
AAAGACAAACTACAACcttttagttttgaaaaagcTATTGATAAGGAAAA
TATGCCTGTTCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025869-exon-sc0000550-1491911889:179075..179346 | TCONS_00025869-exon-sc0000550-1491911889:179075..179346 | Clytia hemisphaerica | exon |
| TCONS_00025869-exon-sc0000550-1510915933:179075..179346 | TCONS_00025869-exon-sc0000550-1510915933:179075..179346 | Clytia hemisphaerica | exon |
| TCONS_00025869-exon-sc0000550-1575043694:179075..179346 | TCONS_00025869-exon-sc0000550-1575043694:179075..179346 | Clytia hemisphaerica | exon |
| TCONS_00025869-exon-sc0000550-1491911889:179407..179686 | TCONS_00025869-exon-sc0000550-1491911889:179407..179686 | Clytia hemisphaerica | exon |
| TCONS_00025869-exon-sc0000550-1510915933:179407..179686 | TCONS_00025869-exon-sc0000550-1510915933:179407..179686 | Clytia hemisphaerica | exon |
| TCONS_00025869-exon-sc0000550-1575043694:179407..179686 | TCONS_00025869-exon-sc0000550-1575043694:179407..179686 | Clytia hemisphaerica | exon |
| TCONS_00025869-exon-sc0000550-1491911889:184281..185396 | TCONS_00025869-exon-sc0000550-1491911889:184281..185396 | Clytia hemisphaerica | exon |
| TCONS_00025869-exon-sc0000550-1510915933:184281..185396 | TCONS_00025869-exon-sc0000550-1510915933:184281..185396 | Clytia hemisphaerica | exon |
| TCONS_00025869-exon-sc0000550-1575043694:184281..185396 | TCONS_00025869-exon-sc0000550-1575043694:184281..185396 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000550 | supercontig | sc0000550:179075..185396 + |
Blast
The following BLAST results are available for this feature:
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