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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025885 ID=TCONS_00025885|Name=TCONS_00025885|organism=Clytia hemisphaerica|type=transcript|length=1084bp
gaaatattttatgtaaTTTATAGACCAGAGCAGAGCTAGAAAGATGTCTT
AAGACATTTCAGACAATCGCAAATCTATGACATCTGTCACACCTGACACT
CCTAGGTGACGAAAAAATATCATGCTTTCCCTTCCTGCAAAGCTTATTAG
GTGTGGTTGATTGAAGTAAACATCAATCCAGCGCTACATACAAATTGTCA
CGTATTAAAAGAAACTATTCCACCAGTTGTTCATCAGACTCTCGATATCG
CATTGGAGATATTCAACAAACGTAAGAAACGAACGAAACTTGGTCAACTA
GACTGTGTTACTTCAATGGAACCTCTTTACAACGGTGTCACTGGGGCCAC
CTGTTAGCACGTAAAAAATGTCTCCCGATCTCCTCTCATGTAATGACTTG
AAATACCCAGgtacatccctgtgtcacagacctcggccccactggaaaat
ttgacaaaaattcgtCCCCGGTAGGAAAAGACCCATCCGaaaatcaatgt
ttaaaaactgcACTCCAGAGCCATCCtcactgggttttttaaccttggaa
caatagaatttatgTCCCTACTTGAATTTCGATAggaaattttatcccca
ctgaggaaaaaagttccacaaGGGCTGTCAGACAGGGGTGTCCAGGTATA
CCTTTCTAACAGTACCATGGACATGATGTATCCCTGGTTTCATCATACCA
CAAATGGATTTTTGATTGGAATTTTAACGTTAGATTTGAAATAACGAACT
TCTGCGTTAAAGGAACTTGTTTTGTGAGGAGAAATAAATTTGGTGACATA
AATTTACTTTATAATTTTAGTAGCATAAATTTATCATAAATTAGAAAGCT
TTTGATTATGGTGTGAAACTTACTTCAGCAACTGATAAGCTAAATCTTTC
CAATTTTGCATTAATAGACATTTTCTTAAAttaacatcacttgcctcgtt
ttgaaattattgccatggtgattaactcccagcagattttatttAAACTA
CTTTCTTTTCATATAGAAATCATGTCTCAAGAAACATAATCACCATATca
attgtttgaaaacgaggcaaaggatattcgtgac Run BLAST on NCBI transcript from alignment at sc0000550:136428..138070- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025885 ID=TCONS_00025885|Name=TCONS_00025885|organism=Clytia hemisphaerica|type=transcript|length=1643bp|location=Sequence derived from alignment at sc0000550:136428..138070- (Clytia hemisphaerica)
GAAATATTTTATGTAATTTATAGACCAGAGCAGAGCTAGAAAGATGTCTT
AAGACATTTCAGACAATCGCAAATCTATGACATCTGTCACACCTGACACT
CCTAGGTGACGAAAAAATATCATGCTTTCCCTTCCTGCAAAGCTTATTAG
GTGAGCAAATCATATTTCTAGCCTCGTCAAACTTTTAGTGAAATACAGTA
TTTGTCTCGTTTTGTTAGAAAATTTTAACTTATGCAAGCCTTCACTTCCT
CTCTCCATTTTTGGAATTGTGTTTCCATCCTTGTGTAAATCCAGCTTTTT
AGGTTTATCAGATATTACAGAATCGCGTGTTTTAGGCATTATGGTATTTT
TTTTCTGAGAATACCGGTGTGCACTAAAACCTTTTGGACAGGCTTGAGAC
TCAAAAAATAACCCGGTTTGGCTAGAATTTTAAACAAGAATCGGGCTTTC
CAAAAGCTTACTGCTACTGGAAGTTCCAAGATTTAAGCCTGGTATATTTT
GCGTTGAAATAAAAACGTATATATATTCTATAAATTCACTTTAACCTTAC
TTTAAAGGTGTGGTTGATTGAAGTAAACATCAATCCAGCGCTACATACAA
ATTGTCACGTATTAAAAGAAACTATTCCACCAGTTGTTCATCAGACTCTC
GGTAAGTTTCATACTCATTTTCGGGGTATTTATAATCTCAACTGGCTTAT
AGCATCTTATTTAACGATATCAAAAACCACCCCTGATCCTTTGAAGTACA
TTAAAGCACGGTAGCAAATTCAAATTTTGATCAATCATTTTCTATATTGT
TAGATATCGCATTGGAGATATTCAACAAACGTAAGAAACGAACGAAACTT
GGTCAACTAGACTGTGTTACTTCAATGGAACCTCTTTACAACGGTGTCAC
TGGGGCCACCTGTTAGCACGTAAAAAATGTCTCCCGATCTCCTCTCATGT
AATGACTTGAAATACCCAGGTACATCCCTGTGTCACAGACCTCGGCCCCA
CTGGAAAATTTGACAAAAATTCGTCCCCGGTAGGAAAAGACCCATCCGAA
AATCAATGTTTAAAAACTGCACTCCAGAGCCATCCTCACTGGGTTTTTTA
ACCTTGGAACAATAGAATTTATGTCCCTACTTGAATTTCGATAGGAAATT
TTATCCCCACTGAGGAAAAAAGTTCCACAAGGGCTGTCAGACAGGGGTGT
CCAGGTATACCTTTCTAACAGTACCATGGACATGATGTATCCCTGGTTTC
ATCATACCACAAATGGATTTTTGATTGGAATTTTAACGTTAGATTTGAAA
TAACGAACTTCTGCGTTAAAGGAACTTGTTTTGTGAGGAGAAATAAATTT
GGTGACATAAATTTACTTTATAATTTTAGTAGCATAAATTTATCATAAAT
TAGAAAGCTTTTGATTATGGTGTGAAACTTACTTCAGCAACTGATAAGCT
AAATCTTTCCAATTTTGCATTAATAGACATTTTCTTAAATTAACATCACT
TGCCTCGTTTTGAAATTATTGCCATGGTGATTAACTCCCAGCAGATTTTA
TTTAAACTACTTTCTTTTCATATAGAAATCATGTCTCAAGAAACATAATC
ACCATATCAATTGTTTGAAAACGAGGCAAAGGATATTCGTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025885-exon-sc0000550-1575043694:137921..138070 | TCONS_00025885-exon-sc0000550-1575043694:137921..138070 | Clytia hemisphaerica | exon |
| TCONS_00025885-exon-sc0000550-1575043694:137420..137513 | TCONS_00025885-exon-sc0000550-1575043694:137420..137513 | Clytia hemisphaerica | exon |
| TCONS_00025885-exon-sc0000550-1575043694:136428..137267 | TCONS_00025885-exon-sc0000550-1575043694:136428..137267 | Clytia hemisphaerica | exon |
| TCONS_00025885-exon-sc0000550-1510915933:137921..138070 | TCONS_00025885-exon-sc0000550-1510915933:137921..138070 | Clytia hemisphaerica | exon |
| TCONS_00025885-exon-sc0000550-1510915933:137420..137513 | TCONS_00025885-exon-sc0000550-1510915933:137420..137513 | Clytia hemisphaerica | exon |
| TCONS_00025885-exon-sc0000550-1510915933:136428..137267 | TCONS_00025885-exon-sc0000550-1510915933:136428..137267 | Clytia hemisphaerica | exon |
| TCONS_00025885-exon-sc0000550-1491911889:137921..138070 | TCONS_00025885-exon-sc0000550-1491911889:137921..138070 | Clytia hemisphaerica | exon |
| TCONS_00025885-exon-sc0000550-1491911889:137420..137513 | TCONS_00025885-exon-sc0000550-1491911889:137420..137513 | Clytia hemisphaerica | exon |
| TCONS_00025885-exon-sc0000550-1491911889:136428..137267 | TCONS_00025885-exon-sc0000550-1491911889:136428..137267 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000550 | supercontig | sc0000550:136428..138070 - |
Blast
The following BLAST results are available for this feature:
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