TCONS_00025868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025868
Unique NameTCONS_00025868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025868 ID=TCONS_00025868|Name=TCONS_00025868|organism=Clytia hemisphaerica|type=transcript|length=1438bp
AATAGATCCACTTACAACTAATAAAAAACAGTCAATATTAAACTAAATGA
GTAGCAATATATTATCAGATTTGAAACTTCCCGAGCCAGACGTTCGATTG
GTAGTTTACAATCAAACCATAGTCAAAGTCAAGTTGAGATGCCGTAATGC
TCAAATCACTGGTGAAACGAACCATGAAAGCATGAAATTCTGGAAGAAAA
ACAAGACTCAAAACGACATAAaggtatcgaatagtagagtccattcgctt
taagtgtgcactgaACCTTTGTTTGGCTTGTCATTTGATAATAAATGTTT
CAACTTTAACATATGATATATCGTTGAAAAGATGATTCAGAGCACtataa
tttctgaaaaaataattcaaaaattttagtaaatgaagatgaaaaatgaa
gatgaaaaatgaagatgaaaaaagtgaatttttaattttatattcttAAT
GCACAAAGCTGCGGATTAGCAATGCAAAACATGATCGAGTCCGACCTTTA
AATAAATTTAGTTTCGGCCTAAAATAatggaaatcgtcgtttttcaGACT
TTCATTGCATTTTATCGTtagatttctttattttttctcaCAGAAACGTT
ATTGATAGCAATACACACAATCAAGCAtgatttaattgtcaataaaactg
atttttgcatcCCTCGAGCTgtagttgatattttttcatgaaatttcgca
cactgatgcaaaattaggctgcgcgcatccccagaatttattttgttata
gggaatgcgtatcgtgtatgaaattctcgtccgagagttacctaaaattt
ggggtaaccaaaatttgcatgaatttaaaaaattaaaaaaagagctTCGT
TagatttaaagtttttaaaatttctgcTACTCGCAAAAAAAGGTTCCCTA
AGGgtaaaatatctgaaaaagGGCAGAGCACGTTAATTTGACAACTTCGG
ACACTACTGTTAGCTTGGTTTGGAGTTAAATACTGGATAAAATGCGTCAA
GGGCGGTTATATTGAACGATATTTCTTATTTTAGCGGGCCATGAAGTACA
TATTAAGTGGATCGAACAAGATTGAACCCATACGGACAGATGAACTTGTC
ATTTATCCATACAAGCGTGAATGGCCGAACGCATCTAAATTTGAATTCAC
TCGTGAGGGAGACACCTTAAACTGTTCACAAGATCTATATATGTTTTACA
TTGAACGTATTGAAGATAAACAAACACCAACAACACCAGTCACCATGAGA
GCTCAAACGCGTGAAGAACAAATTGTATTGGTCGTGGATGAAAAGACACC
TGTTAATTCGTTCGTTACGAGGTAGAGCGTTGACTGATTCGCTGAAAAAG
AAACGAAGAAGAATCAATTCTATTCATGAAGAATCGTCTCAAAGCTCAAC
TGACGAAAAGATTGACTCAAGTGACGAAGAGAGAGGTA
Run BLAST on NCBI

transcript from alignment at sc0000550:122340..128180+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025868 ID=TCONS_00025868|Name=TCONS_00025868|organism=Clytia hemisphaerica|type=transcript|length=5841bp|location=Sequence derived from alignment at sc0000550:122340..128180+ (Clytia hemisphaerica)
AATAGATCCACTTACAACTAATAAAAAACAGTCAATATTAAACTAAATGA
GTAGCAATATATTATCAGATTTGAAACTTCCCGAGCCAGACGTTCGATTG
GTAGTTTACAATCAAACCATAGTCAAAGTCAAGTTGAGATGCCGTAATGC
TCAAATCACTGGTGAAACGAACCATGAAAGGTACTTatatattttgaaga
ttttggttTGACTTAATTTCACGAATTATTCATTATTGGTGAGCTTTTAT
GTGAAACTGTGTTGATGGTTTTGGATATTTGCATTATTAATGctttttct
cttgacacttCTTCATATGACCTTGCCAAAATGGCTTTGGAAGAAAAACA
CCCCCTTGAGACGGAGAAGTTTTATCGTTTTTATAGAAGTTTTATGAAAT
TGCATtttggaattaatttttgtaCATATAACAACATCGACTACCCTCCA
GTCCtttgttttaaagatttttctttccattttaCAGCATGAAATTCTGG
AAGAAAAACAAGACTCAAAACGACATAAaggtatcgaatagtagagtcca
ttcgctttaagtgtgcactgaACCTTTGTTTGGCTTGTCATTTGATAATA
AATGTTTCAACTTTAACATATGATATATCGTTGAAAAGATGATTCAGAGC
ACtataatttctgaaaaaataattcaaaaattttagtaaatgaagatgaa
aaatgaagatgaaaaatgaagatgaaaaaagtgaatttttaattttatat
tcttAATGCACAAAGCTGCGGATTAGCAATGCAAAACATGATCGAGTCCG
ACCTTTAAATAAATTTAGTTTCGGCCTAAAATAatggaaatcgtcgtttt
tcaGACTTTCATTGCATTTTATCGTtagatttctttattttttctcaCAG
AAACGTTATTGATAGCAATACACACAATCAAGCAtgatttaattgtcaat
aaaactgatttttgcatcCCTCGAGCTgtagttgatattttttcatgaaa
tttcgcacactgatgcaaaattaggctgcgcgcatccccagaatttattt
tgttatagggaatgcgtatcgtgtatgaaattctcgtccgagagttacct
aaaatttggggtaaccaaaatttgcatgaatttaaaaaattaaaaaaaga
gctTCGTTagatttaaagtttttaaaatttctgcTACTCGCAAAAAAAGG
TTCCCTAAGGgtaaaatatctgaaaaagGGCAGAGCACGTTAATTTGACA
ACTTCGGACACTACTGTTAGCTTGGTTTGGAGTTAAATACTGGATAAAAT
GCGTCAAGGGCGGTTATATTGAACGATATTTCTTATTTTAGCGGGCCATG
AAGTACATATTAAGTGGATCGAACAAGATTGAACCCATACGGACAGATGA
ACTTGTCATTTATCCATGTATCTTTTTCATTACGTTATTTTCATCATcaa
tttcgaaatttatttgttttgatgtaccAAAATTTATAAACTAGTATTCG
CTGGCCTGAATGTATATAGTCTTGTGAATTTGAGTTTGGGTGGTAGGATA
TCTTGTAAGAATTTCCTTGACCTAAATCCCAAAAAAAATCAGACAAGCGT
GAATGGCCGAACGCATCTAAATTTGAATTCACTCGTGAGGGAGACACCTT
AAACTGTTCACAAGATCTATATATGTTTTACATTGAACGTATTGAAGATA
AACAAACACCAACAACACCAGTCACCATGAGAGCTCAAACGCGTGAAGAA
CAAATTGTATTGGTCGTGGATGAAAAGACACCTGTTAATTGTAAGTTTTC
ACTCTCTTATTGGTTTATCAAGGAATATAAACCAATTTCGTTATTTTCGA
CCTTGGATTGCCTTTCCTCATAATTGTTCATAGTTTTCTAGATTTCTTCG
TACTCTACTACAGTGGCGGATCTAAGGCCTTTCAAAATTTATGGCGGAGA
GCGTTTATATGTGAACCATAATCCTTATGAGGATATTTCTCCGTCAGAAA
TTTTGAACCTTCTTTAGATGTTTCAGATCCGCAAATGCTTTATCTAATTT
TTTAACATTCTTACGATTAAGTGTAATTATATTCTCGTGGTTTTCATGGG
CTTTGGTAAGTTTTTAAACATATTGAGTTATCCAAATGATCAATTTCAGT
GTTAAGTTAGCTtgtgtttattgattttcagcACCAGCTCAGAGAAGTAT
AGTTAGCACACGAAATTCAGGAAAGGTATAGCAACAGAATATTCAATTTA
TAATTTTGCAGGATTGTTATCAGTTTGTCGATGGAAAGGTTCCTTTAATA
AACTTTTAGTAATATCGGGTGACTCATAAAACTTTGGATTTCTGACGAAC
TTTTGAGAACAAACAAAGTTATACTTGCTTTTTTCTAGTTAAAGTTATTT
TGAGatcaaattatttctttttgtcCCAGGAAGTCGCCTAACGCCCTAAG
TTATTTGAGTCAGTCGGTATAGTTTTTGTTTCCAGAAACCTTAGTAAAGG
TATTGGTATTAAACCAATACTTTTACGTTCAGCCACTCTATTTGCAGTTC
TGTATCCATTTAAATATCCCCACAGTAACAGACAGAGTATTTTTCATTAG
TTTAGAGTGTCCGAGATAGACCATATTATTGAAAGTTCTCTTTATCGTTT
TCCTTGTGCTTCTGAATGCTGCTCTTGGcttcaattttgtcatttttttg
tgtccaataagttttgtttttttgggctTTGGAATTTTTCCTGTGACATA
ACAATTTTACTGATGTAACTCGCTTTCTCTAAAGAAAGGTTTTTCAAAAT
ACTCTTCTTTGTGATAAAAAAAACTGGACTAGAAAATCGAGGAAATTAGC
GAAAACGTCATCTTTTAATGGTTCAACTCCAATCTATTAGCCATACGAAC
CGTTCGTAATGATGGTTGTGTTCTATCTACAGTacactctcgcttattcg
aacttctattattccaatcactctataattcgaacttgttcccagtcccc
gtcaaggagaaaccctcttaaaatactttctataattcgaatctctttgt
aattcgaacaaataacaTTCCCCGCTTAAGTTCGAATTAACGATAGTCTA
ctttaataaactttttttctattgtagcaggttcatgtaaaaaagtcacg
aaaaaacgtcgagcAAAGCCCTGACTAGCTGAATATTGCACACATAAGCG
TTTTTTTCTGTCCAGAATATGAGTTAATCTTATCGTAtgtctcagccaat
cagagctttactcgacgttttttatATGAATCTGGTAAAAGGAAATTTGT
GTATTCCTATTTCTTTACATAGCGTTCGTTACGAGGTAGAGCGTTGACTG
ATTCGCTGAAAAAGAAACGAAGAAGAATCAATTCTATTCATGAAGAATCG
TCTCAAAGCTCAACTGTAAGACTATTTTCTTGAGCTGTTCTGAAAACCCT
TTTTTCCCAACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGAGTTACATCA
ATTTTGTAAATGAAGTATTTTGTGGAgcatgtaaaaatattttattttaa
tcagCTTTTGGAAAAGTCCCAAGGCCAAGAGAGTTAAAAGTGAGAATATG
TCGAGTCTAtgtgaagaaaatgaaaattgaaataagaaGGGAACCTTCTG
TGTTCTGGAGGTGGAGTATGCACAATATTTGCATATTTATTTGGTTgact
ggaaaaaaataaaacagatttttcataaagtaaaatcctaagagtcattt
tgaaatttttggaaacaAATCACCCCCATGTCACTTtaaaatgacccccc
cccccccctctttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNcccccccccccccccacctctACAATTGAGCACACA
AGAGTATAACAAATCGTGATAGAATATATGAGGTTTTTTTATTTGCATTt
aactctctataattcgaacttttgtaattcgaatctttctctaatttgaa
ctAAAACTTTGGTCCCTTCAGCTGAAAATTAGTTTAAAATGTTCTctaaa
attcgaatctttctctgatTCGAAGAAAGGTTTTGCAACTGTAAATTCGT
TCTGCTCCGCTTTTTTTTCTGGACGCACTGTATTTGGCTTTGATCTGTAT
ATGACTACtaaactttaaataaaaatacagCTTGATTATCTTCATAGCTC
AGACGTCCCTAACGGactgttcgagttatggagattctaTCCATAATGTC
CATCAATTTATATTATTTACCAAAAAGATTGTTCTGCTTGTTTACATATT
TTAGGACGAAAAGATTGACTCAAGTGACGAAGAGAGAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014546XLOC_014546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025868-exon-sc0000550-1491911889:122340..122519TCONS_00025868-exon-sc0000550-1491911889:122340..122519Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1510915933:122340..122519TCONS_00025868-exon-sc0000550-1510915933:122340..122519Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1575043694:122340..122519TCONS_00025868-exon-sc0000550-1575043694:122340..122519Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1491911889:122827..123756TCONS_00025868-exon-sc0000550-1491911889:122827..123756Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1510915933:122827..123756TCONS_00025868-exon-sc0000550-1510915933:122827..123756Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1575043694:122827..123756TCONS_00025868-exon-sc0000550-1575043694:122827..123756Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1491911889:123932..124129TCONS_00025868-exon-sc0000550-1491911889:123932..124129Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1510915933:123932..124129TCONS_00025868-exon-sc0000550-1510915933:123932..124129Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1575043694:123932..124129TCONS_00025868-exon-sc0000550-1575043694:123932..124129Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1491911889:125662..125754TCONS_00025868-exon-sc0000550-1491911889:125662..125754Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1510915933:125662..125754TCONS_00025868-exon-sc0000550-1510915933:125662..125754Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1575043694:125662..125754TCONS_00025868-exon-sc0000550-1575043694:125662..125754Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1491911889:128144..128180TCONS_00025868-exon-sc0000550-1491911889:128144..128180Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1510915933:128144..128180TCONS_00025868-exon-sc0000550-1510915933:128144..128180Clytia hemisphaericaexon
TCONS_00025868-exon-sc0000550-1575043694:128144..128180TCONS_00025868-exon-sc0000550-1575043694:128144..128180Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000550supercontigsc0000550:122340..128180 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0429396	0.247717	0.841535	1.5558	0.236908	0.0438129	0.0530684	0.231832	1.16761	0.618946	0.0397506	0.393932	0.0573595	0.0576527	0	0.0785775	0	0.160952	0.141329	0.0855693	0	0.0628904	0.193781	0.223744	0.0387586	0.0706177	0.170316	0.241727	0.139054	0.0486284
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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