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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025862 ID=TCONS_00025862|Name=TCONS_00025862|organism=Clytia hemisphaerica|type=transcript|length=1536bp
CAAGAGAGTACGATGTGACTGTACAAGagctttttttcgaaactttaaaa
aatattcaaatgataATGTATAGGTCGATACCAATGGCTGGTCTATCAAC
ATGTTTTCTTTGCTTTATCGTTTGTTTACCAGTATCGATGGCTTTTCGAC
ATACCATTACAACATGCTTTGAAGTCAAGACTGTCAGTATTATTCCAAAT
ATATTAGAAGACCCCTTAACAGACTCCGCATTACATCCTTTGCAAGATTC
TACTGTGCAGTTGAGATATTTGATCAAGTCAATGTTGCATGAGCCCTGTT
TTATAGTTTGGGCATTCTCACCGGTACAAAATCGTTTGATTCGGCTATAT
GAAGAGAACTACACTCAATTTATCGACACCCAATTCCAATCAGTCACGCA
AACAGATGAAAATGATTTGCTGGAGCTTTTGTTAAATATACGTCATCACA
ACGATAATAATATGCAAACTCTTTTTTTCGTGTTTAATGTATCTCCAATG
AGGTCgtattataattattttaaaatgaTCCAGCAAGCTCAAAACATGTA
CGAGAAAAAACAAATCGACGTTGTGGTATGGAGTTTAAGAAACGCTATCT
ATAAAACATTTTGGAATTGGCTACCAAAACAAAACCTTGTAGTAGATGCT
ATCATTGGGTCACCTCCATTCGACCCACACTTGCATCGAATACTAATGGA
TCTTATGCTCAATCCTCAGTACGACTGGCAAAAAAGGTACACACGTAATG
CTAATGTCACATGTCGAACGTCAAAACGGATtaatttgtacttttgggcA
ATGGATAATGGTAATCGTTTCCCTAGCAACAAAATTTGGaatgatgtttt
tgaaaatttatctttGAATGCAACATTTAACCGTATCTATACGTATTATA
ATTTCATAATCTCCAGCCACAAAAGTCATCAGCCAAGAGACAAATTCATT
AAAGAAATGAAAGAAGAAGAACAGAAGGATGATATCATTGTTATCCACTT
ACCAATTACTATAAGTCAAAGTTATAAGGGTCCACCTTCATCACCAATGA
AATTTAACAAAGAGAACACAATCCATATATATCAAACCCTTACTACCCTT
GAAGACACTCCTCAACTTCGAAATGGATCGTCTATGAACTATATCATGAT
ACAAGAAAACGATTGTTTTAACCCCCTGTTTTTTGAATTGGTTATTCAGC
AAGTAAACCGTGTATTATGTGAAATGAACTAGACTATttctcgcttattc
gaattttcattaattcgAACCAATTGTTATAAGTTCCCGTTAAGTGTAAA
CCCTTGTAAAATACTATATTTCGAACTCCGAAGTCCGAACAAATTGAACT
TCCCTTTCAAGCTCGAATTAgtgagagtcaactgtatttattGGTGATTT
TTATGGATTTATTAGTAATAGAGACAAATTATTGTCATACAAGGACattg
tcccggggggggggtactagggcaaaatgggttacggggatgctccgctg
gtcagggtaccttttttaacctccacgagtcccagg Run BLAST on NCBI protein sequence of TCONS_00025862-protein >TCONS_00025862-protein ID=TCONS_00025862-protein|Name=TCONS_00025862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp
REYDVTVQELFFETLKNIQMIMYRSIPMAGLSTCFLCFIVCLPVSMAFRH
TITTCFEVKTVSIIPNILEDPLTDSALHPLQDSTVQLRYLIKSMLHEPCF
IVWAFSPVQNRLIRLYEENYTQFIDTQFQSVTQTDENDLLELLLNIRHHN
DNNMQTLFFVFNVSPMRSYYNYFKMIQQAQNMYEKKQIDVVVWSLRNAIY
KTFWNWLPKQNLVVDAIIGSPPFDPHLHRILMDLMLNPQYDWQKRYTRNA
NVTCRTSKRINLYFWAMDNGNRFPSNKIWNDVFENLSLNATFNRIYTYYN
FIISSHKSHQPRDKFIKEMKEEEQKDDIIVIHLPITISQSYKGPPSSPMK
FNKENTIHIYQTLTTLEDTPQLRNGSSMNYIMIQENDCFNPLFFELVIQQ
VNRVLCEMN Run BLAST on NCBI transcript from alignment at sc0000549:219781..221316 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025862 ID=TCONS_00025862|Name=TCONS_00025862|organism=Clytia hemisphaerica|type=transcript|length=1536bp|location=Sequence derived from alignment at sc0000549:219781..221316 (Clytia hemisphaerica)
cctgggactcgtggaggttaaaaaaggtaccctgaccagcggagcatccc
cgtaacccattttgccctagtaccccccccccgggacaatGTCCTTGTAT
GACAATAATTTGTCTCTATTACTAATAAATCCATAAAAATCACCaataaa
tacagttgactctcacTAATTCGAGCTTGAAAGGGAAGTTCAATTTGTTC
GGACTTCGGAGTTCGAAATATAGTATTTTACAAGGGTTTACACTTAACGG
GAACTTATAACAATTGGTTcgaattaatgaaaattcgaataagcgagaaA
TAGTCTAGTTCATTTCACATAATACACGGTTTACTTGCTGAATAACCAAT
TCAAAAAACAGGGGGTTAAAACAATCGTTTTCTTGTATCATGATATAGTT
CATAGACGATCCATTTCGAAGTTGAGGAGTGTCTTCAAGGGTAGTAAGGG
TTTGATATATATGGATTGTGTTCTCTTTGTTAAATTTCATTGGTGATGAA
GGTGGACCCTTATAACTTTGACTTATAGTAATTGGTAAGTGGATAACAAT
GATATCATCCTTCTGTTCTTCTTCTTTCATTTCTTTAATGAATTTGTCTC
TTGGCTGATGACTTTTGTGGCTGGAGATTATGAAATTATAATACGTATAG
ATACGGTTAAATGTTGCATTCaaagataaattttcaaaaacatcattCCA
AATTTTGTTGCTAGGGAAACGATTACCATTATCCATTgcccaaaagtaca
aattaATCCGTTTTGACGTTCGACATGTGACATTAGCATTACGTGTGTAC
CTTTTTTGCCAGTCGTACTGAGGATTGAGCATAAGATCCATTAGTATTCG
ATGCAAGTGTGGGTCGAATGGAGGTGACCCAATGATAGCATCTACTACAA
GGTTTTGTTTTGGTAGCCAATTCCAAAATGTTTTATAGATAGCGTTTCTT
AAACTCCATACCACAACGTCGATTTGTTTTTTCTCGTACATGTTTTGAGC
TTGCTGGAtcattttaaaataattataatacGACCTCATTGGAGATACAT
TAAACACGAAAAAAAGAGTTTGCATATTATTATCGTTGTGATGACGTATA
TTTAACAAAAGCTCCAGCAAATCATTTTCATCTGTTTGCGTGACTGATTG
GAATTGGGTGTCGATAAATTGAGTGTAGTTCTCTTCATATAGCCGAATCA
AACGATTTTGTACCGGTGAGAATGCCCAAACTATAAAACAGGGCTCATGC
AACATTGACTTGATCAAATATCTCAACTGCACAGTAGAATCTTGCAAAGG
ATGTAATGCGGAGTCTGTTAAGGGGTCTTCTAATATATTTGGAATAATAC
TGACAGTCTTGACTTCAAAGCATGTTGTAATGGTATGTCGAAAAGCCATC
GATACTGGTAAACAAACGATAAAGCAAAGAAAACATGTTGATAGACCAGC
CATTGGTATCGACCTATACATtatcatttgaatattttttaaagtttcga
aaaaaagctCTTGTACAGTCACATCGTACTCTCTTG Coding sequence (CDS) from alignment at sc0000549:219781..221316 >TCONS_00025862 ID=TCONS_00025862|Name=TCONS_00025862|organism=Clytia hemisphaerica|type=CDS|length=1230bp|location=Sequence derived from alignment at sc0000549:219781..221316 (Clytia hemisphaerica)
CTAGTTCATTTCACATAATACACGGTTTACTTGCTGAATAACCAATTCAA
AAAACAGGGGGTTAAAACAATCGTTTTCTTGTATCATGATATAGTTCATA
GACGATCCATTTCGAAGTTGAGGAGTGTCTTCAAGGGTAGTAAGGGTTTG
ATATATATGGATTGTGTTCTCTTTGTTAAATTTCATTGGTGATGAAGGTG
GACCCTTATAACTTTGACTTATAGTAATTGGTAAGTGGATAACAATGATA
TCATCCTTCTGTTCTTCTTCTTTCATTTCTTTAATGAATTTGTCTCTTGG
CTGATGACTTTTGTGGCTGGAGATTATGAAATTATAATACGTATAGATAC
GGTTAAATGTTGCATTCaaagataaattttcaaaaacatcattCCAAATT
TTGTTGCTAGGGAAACGATTACCATTATCCATTgcccaaaagtacaaatt
aATCCGTTTTGACGTTCGACATGTGACATTAGCATTACGTGTGTACCTTT
TTTGCCAGTCGTACTGAGGATTGAGCATAAGATCCATTAGTATTCGATGC
AAGTGTGGGTCGAATGGAGGTGACCCAATGATAGCATCTACTACAAGGTT
TTGTTTTGGTAGCCAATTCCAAAATGTTTTATAGATAGCGTTTCTTAAAC
TCCATACCACAACGTCGATTTGTTTTTTCTCGTACATGTTTTGAGCTTGC
TGGAtcattttaaaataattataatacGACCTCATTGGAGATACATTAAA
CACGAAAAAAAGAGTTTGCATATTATTATCGTTGTGATGACGTATATTTA
ACAAAAGCTCCAGCAAATCATTTTCATCTGTTTGCGTGACTGATTGGAAT
TGGGTGTCGATAAATTGAGTGTAGTTCTCTTCATATAGCCGAATCAAACG
ATTTTGTACCGGTGAGAATGCCCAAACTATAAAACAGGGCTCATGCAACA
TTGACTTGATCAAATATCTCAACTGCACAGTAGAATCTTGCAAAGGATGT
AATGCGGAGTCTGTTAAGGGGTCTTCTAATATATTTGGAATAATACTGAC
AGTCTTGACTTCAAAGCATGTTGTAATGGTATGTCGAAAAGCCATCGATA
CTGGTAAACAAACGATAAAGCAAAGAAAACATGTTGATAGACCAGCCATT
GGTATCGACCTATACATtatcatttgaatattttttaaagtttcgaaaaa
aagctCTTGTACAGTCACATCGTACTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025862-exon-sc0000549-1491911889:219781..221316 | TCONS_00025862-exon-sc0000549-1491911889:219781..221316 | Clytia hemisphaerica | exon |
| TCONS_00025862-exon-sc0000549-1510915933:219781..221316 | TCONS_00025862-exon-sc0000549-1510915933:219781..221316 | Clytia hemisphaerica | exon |
| TCONS_00025862-exon-sc0000549-1575043694:219781..221316 | TCONS_00025862-exon-sc0000549-1575043694:219781..221316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000549 | supercontig | sc0000549:219781..221316 . |
Blast
The following BLAST results are available for this feature:
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