TCONS_00025837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025837
Unique NameTCONS_00025837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025837 ID=TCONS_00025837|Name=TCONS_00025837|organism=Clytia hemisphaerica|type=transcript|length=1453bp
TCGGTGTGATTGCTAAAGGTGCCAAAAATACTGGAGATGCTGGCAAAATT
GCTCCTAAAGTGACAGCAGAGTTCGCAAAGTttggaaagttctttaaaaC
GGCTTCAAAAATGGCTCCGTGGTTAGGCGCTTTGAGTGGAGCTCTTGGAT
TCATTGGGAAAGCTCCTTCAGCTCAAGATGCTGTTGATGCTGTCAATGTG
GCTTtcaagaaatttgctcaagagATCACCAAGCGaatgaatgaaatgaa
aggtTATGTTGATGATCGAATCATGCAAACAGAGAGCGAATGGGTTCGAA
GACAATACCATGCATTGCTGAATGGATGGGCTGACTGCGTTGTCATTTAC
CACAAAGAGAGTGAAGTCAATGAATGTCAAAGAAGAGCTTCTTATCCATT
CGTAGAGATCGCTCTCATTTTATGTTATTCAAGGGTAAAAGTCCAAATCG
TCAAGAACTGAAAAGACTCGAGTTTCAATTTGTTACCATTCGAGAATATT
CCTTCCTGACACTCCTTGTTTTACGCTCGTTGATCGATAGTTTAAAagct
gaaaaaggaaaaatgaaagACTATGTTCGCATTTTAAAACTTGGCATGGT
CATTCCAGAAGAGCTTGCTGATTATGCAAAATTTATCAACAATCAAATCT
TGGATTTCTATGATAAACAAACAAAGGCTATTTGTAGGGACACTTTCACT
TGCACTAAGTTAAACCATTTTTACGGAAAAACTATCTTTGGTCAACAGAA
AGAAAATCCACATAATCGGAACCTTGAatgcaaatgaaaaatgactCCAG
ATGCTTTGGCTCACGAGTGGTGCACATACAGAGTCGATCTTAGTGTCAAT
AAAAACGAAAAGTGGACCCAACACTATGAGGATAAAAGGCACATGAAAAA
TAGCTGAAAAAGCTTTGTTCGATTATTCCGACAAATATTGGCAACAAACT
TCATCTGTGGTTCGAAAGTATTGGTATGAGAATGTGATGGTACAAGTTCC
TAAATGGGAGCAATTTGCACTCAATGCTGAGAAGGAGTACCAGATATACA
AAGGTCCGAATCTTGCTTTGAGTAGACCAACATATCAATCAAGCAACAAT
CGATGGGATGCGGAGCTAAGTTTTTTGGCAGTAGATGGCAAATATAAACA
GTGCGAAGAGCGAGATGATGGAATCGCAATGACTGGTTATGGCCATGGAC
AATCTTGGAGGGTGATACTTGACGATGTTTACAAAATGACTTCTGTACTT
CTCTACAATATTATCGACTACCGCAGTTCTAAAGAATTATCAAATGTCAA
TATCTATGTGGAAGATGTCGGTGGTAAAAGTCATCTCTGTGCAAACACAG
GTAATATGAACAGGGTCTACATCAAGGAGTTTAAATGTAAAGCTGGAGCC
GTTGGTAATGTTGTAACACTTCGTAAGCAAGCTTCCGGTGGCATACGTTT
GTG
Run BLAST on NCBI

protein sequence of TCONS_00025837-protein

>TCONS_00025837-protein ID=TCONS_00025837-protein|Name=TCONS_00025837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MVQVPKWEQFALNAEKEYQIYKGPNLALSRPTYQSSNNRWDAELSFLAVD
GKYKQCEERDDGIAMTGYGHGQSWRVILDDVYKMTSVLLYNIIDYRSSKE
LSNVNIYVEDVGGKSHLCANTGNMNRVYIKEFKCKAGAVGNVVTLRKQAS
GGIRL
Run BLAST on NCBI

transcript from alignment at sc0000549:47294..49398-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025837 ID=TCONS_00025837|Name=TCONS_00025837|organism=Clytia hemisphaerica|type=transcript|length=2105bp|location=Sequence derived from alignment at sc0000549:47294..49398- (Clytia hemisphaerica)
TCGGTGTGATTGCTAAAGGTGCCAAAAATACTGGAGATGCTGGCAAAATT
GCTCCTAAAGTGACAGCAGAGTTCGCAAAGTTTGGAAAGTTCTTTAAAAC
GGCTTCAAAAATGGCTCCGTGGTTAGGCGCTTTGAGTGGAGCTCTTGGAT
TCATTGGGAAAGCTCCTTCAGCTCAAGATGCTGTTGATGCTGTCAATGTG
GCTTTCAAGAAATTTGCTCAAGAGATCACCAAGCGAATGAATGAAATGAA
AGGTTATGTTGATGATCGAATCATGCAAACAGAGAGCGAATGGGTTCGAA
GACAATACCATGCATTGCTGAATGGATGGGCTGACTGCGTTGTCATTTAC
CACAAAGAGAGTGAAGTCAATGAATGTCAAAGAAGAGCTTCTTATCCATT
CGTAGAGATCGCTCTCATTTTATGTTATTCAAGGGTAAAAGTCCAAATCG
TCAAGAACTGAAAAGACTCGAGTTTCAATTTGTTACCATTCGAGAATATT
CCTTCCTGACACTCCTTGTTTTACGCTCGTTGATCGATAGTTTAAAAGCT
GAAAAAGGAAAAATGAAAGACTATGTTCGCATTTTAAAACTTGGCATGGT
CATTCCAGAAGAGCTTGCTGATTATGCAAAATTTATCAACAATCAAATCT
TGGATTTCTATGATAAACAAACAAAGGCTATTTGTAGGGACACTTTCACT
TGCACTAAGTTAAACCATTTTTACGGAAAAACTATCTTTGGTCAACAGAA
AGAAAATCCACATAATCGGAACCTTGAATGCAAATGAAAAATGACTCCAG
ATGCTTTGGCTCACGAGTGGTGCACATACAGAGTCGATCTTAGTGTCAAT
AAAAACGAAAAGTGGACCCAACACTATGAGGATAAAAGGCACATGAAAAA
TAGCTGAAAAAGCTTTGTTCGATTATTCCGACAAATATTGGCAACAAACT
TCATCTGTGGTTCGAAAGTATTGGTATGAGAATGTGATGGTACAAGTTCC
TAAATGGGAGCAATTTGCACTCAATGCTGAGAAGGAGTACCAGATATACA
AAGGTATTAATAATCTTTGAGAAAATTGACCAAGAGTGACCAATTAGGTT
TTTCCGTTTTTATAGATATTCCCTTTCTTAAAGGAACATTAAAGTAATAA
AATGTAAACATTGCGCGAACCACGTGTCATTAAAGAGAACAATTAAAGTC
ACGTGTCCAAAACAAACTTGTAAAACAATTGAACAATCAAAATTAGCCAC
ATTTGGCTTGATGTTTTATTTTGACATGTGCCATTTGTTTTGATTTTGTA
TCCGCTGCATACAGTTTGTTTACAAATTTCGCAAGTACTGTTATGTCCCT
TTAAGCTAAGTAAACTATTCTTTTGTTTAAAATTAAAACTGCAACCTTGA
AAATTATGCTTATTTGAGATACTTTCAAAAGGTTATCCTTTCATACCCAC
TACCTAGTCTCTTAGAAGATCTAAGAGGGGATTCACTATTTACAAGAATC
GTTAAGATTGGGTTAGAAGTTAAATCTTGAAACAATAACATCTATTCTTT
ATTTTCAAAGAATGACGCTTCTCTATTATTTCAAATAACCAATGAGTAAA
GCATCTTGTAAAAACTACATGTCAACTGACTTTCACCCCTCTCCCCCTCG
GAAATAAGTTGCAGTTCACTTTAACAATTGTTTCTACACACCCTTGTTTT
TACAGGTCCGAATCTTGCTTTGAGTAGACCAACATATCAATCAAGCAACA
ATCGATGGGATGCGGAGCTAAGTTTTTTGGCAGTAGATGGCAAATATAAA
CAGTGCGAAGAGCGAGATGATGGAATCGCAATGACTGGTTATGGCCATGG
ACAATCTTGGAGGGTGATACTTGACGATGTTTACAAAATGACTTCTGTAC
TTCTCTACAATATTATCGACTACCGCAGTTCTAAAGAATTATCAAATGTC
AATATCTATGTGGAAGATGTCGGTGGTAAAAGTCATCTCTGTGCAAACAC
AGGTAATATGAACAGGGTCTACATCAAGGAGTTTAAATGTAAAGCTGGAG
CCGTTGGTAATGTTGTAACACTTCGTAAGCAAGCTTCCGGTGGCATACGT
TTGTG

Coding sequence (CDS) from alignment at sc0000549:47294..49398-

>TCONS_00025837 ID=TCONS_00025837|Name=TCONS_00025837|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at sc0000549:47294..49398- (Clytia hemisphaerica)
GTCCGAATCTTGCTTTGAGTAGACCAACATATCAATCAAGCAACAATCGA
TGGGATGCGGAGCTAAGTTTTTTGGCAGTAGATGGCAAATATAAACAGTG
CGAAGAGCGAGATGATGGAATCGCAATGACTGGTTATGGCCATGGACAAT
CTTGGAGGGTGATACTTGACGATGTTTACAAAATGACTTCTGTACTTCTC
TACAATATTATCGACTACCGCAGTTCTAAAGAATTATCAAATGTCAATAT
CTATGTGGAAGATGTCGGTGGTAAAAGTCATCTCTGTGCAAACACAGGTA
ATATGAACAGGGTCTACATCAAGGAGTTTAAATGTAAAGCTGGAGCCGTT
GGTAATGTTGTAACACTTCGTAAGCAAGCTTCCGGTGGCATACGTTTGAT
GGTACAAGTTCCTAAATGGGAGCAATTTGCACTCAATGCTGAGAAGGAGT
ACCAGATATACAAAGGTCCGAATCTTGCTTTGAGTAGACCAACATATCAA
TCAAGCAACAATCGATGGGATGCGGAGCTAAGTTTTTTGGCAGTAGATGG
CAAATATAAACAGTGCGAAGAGCGAGATGATGGAATCGCAATGACTGGTT
ATGGCCATGGACAATCTTGGAGGGTGATACTTGACGATGTTTACAAAATG
ACTTCTGTACTTCTCTACAATATTATCGACTACCGCAGTTCTAAAGAATT
ATCAAATGTCAATATCTATGTGGAAGATGTCGGTGGTAAAAGTCATCTCT
GTGCAAACACAGGTAATATGAACAGGGTCTACATCAAGGAGTTTAAATGT
AAAGCTGGAGCCGTTGGTAATGTTGTAACACTTCGTAAGCAAGCTTCCGG
TGGCATACGTTTGATGGTACAAGTTCCTAAATGGGAGCAATTTGCACTCA
ATGCTGAGAAGGAGTACCAGATATACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014523XLOC_014523Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025837-proteinTCONS_00025837-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025837-exon-sc0000549-1575043694:48346..49398TCONS_00025837-exon-sc0000549-1575043694:48346..49398Clytia hemisphaericaexon
TCONS_00025837-exon-sc0000549-1575043694:47294..47693TCONS_00025837-exon-sc0000549-1575043694:47294..47693Clytia hemisphaericaexon
TCONS_00025837-exon-sc0000549-1510915933:48346..49398TCONS_00025837-exon-sc0000549-1510915933:48346..49398Clytia hemisphaericaexon
TCONS_00025837-exon-sc0000549-1510915933:47294..47693TCONS_00025837-exon-sc0000549-1510915933:47294..47693Clytia hemisphaericaexon
TCONS_00025837-exon-sc0000549-1491911889:48346..49398TCONS_00025837-exon-sc0000549-1491911889:48346..49398Clytia hemisphaericaexon
TCONS_00025837-exon-sc0000549-1491911889:47294..47693TCONS_00025837-exon-sc0000549-1491911889:47294..47693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000549supercontigsc0000549:47294..49398 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.485058	0.51746	0	0.0631829	10.1572	4.61535	4.75556	6.66276	3.72832	4.46502	0.406467	2.63377	0	0	0	0	0.142426	0	0	0	0	0	1.77282	1.2682	0	0	0	0	0.447706	0.968935
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top