TCONS_00025848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025848
Unique NameTCONS_00025848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025848 ID=TCONS_00025848|Name=TCONS_00025848|organism=Clytia hemisphaerica|type=transcript|length=582bp
GGCGTTCGCATATTCGATAAAAAGAAACCAACCTGCCTTGCCACCGATTG
GTCAAAATCCGGTATTGGTTATTGGCTGTTCCAGAAACACTGCGTCTGTC
CGGACATCAAACCATTCTGCTGCAACACTGGTTGGAAGGTTGTGCTTGTT
GGCAGCCGATTCACCCACGCTGCTGAATCCCGCTACGCCCCCATCGAAGG
TGAAGCCCTTGCAGTAGCTGATGCACTAGACAAGGCCAGACACTTCGTAT
TAGGCTGTGACGACCTGATTGTTGCAGTGGACCACAAACCCTTGCTTGGT
GTTTTTTCCGATCGCTCACTCGAAAAGATCACCAATGGTCGTTTACGTAA
CTTGAAAGAAAAAACCCTTCGATACCGATTCAAGATGTGCTACATTCCCG
GCAGATAGAACTGCGTCTCCGACACCATGTCCAGACATCCAAGCGGATCC
AAATCACCTGTCAAGATGCACCTACCTGATGACATCTTTTCTATATCATC
CACTGAGCTACTGCCACCGAAAGTCCATCAAGTCTTACCGTCGAATAACA
TCAGCCGGCCAACTTCAACACTCGCAGACGAA
Run BLAST on NCBI

protein sequence of TCONS_00025848-protein

>TCONS_00025848-protein ID=TCONS_00025848-protein|Name=TCONS_00025848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
GVRIFDKKKPTCLATDWSKSGIGYWLFQKHCVCPDIKPFCCNTGWKVVLV
GSRFTHAAESRYAPIEGEALAVADALDKARHFVLGCDDLIVAVDHKPLLG
VFSDRSLEKITNGRLRNLKEKTLRYRFKMCYIPGR
Run BLAST on NCBI

transcript from alignment at sc0000549:20976..21557

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025848 ID=TCONS_00025848|Name=TCONS_00025848|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at sc0000549:20976..21557 (Clytia hemisphaerica)
TTCGTCTGCGAGTGTTGAAGTTGGCCGGCTGATGTTATTCGACGGTAAGA
CTTGATGGACTTTCGGTGGCAGTAGCTCAGTGGATGATATAGAAAAGATG
TCATCAGGTAGGTGCATCTTGACAGGTGATTTGGATCCGCTTGGATGTCT
GGACATGGTGTCGGAGACGCAGTTCTATCTGCCGGGAATGTAGCACATCT
TGAATCGGTATCGAAGGGTTTTTTCTTTCAAGTTACGTAAACGACCATTG
GTGATCTTTTCGAGTGAGCGATCGGAAAAAACACCAAGCAAGGGTTTGTG
GTCCACTGCAACAATCAGGTCGTCACAGCCTAATACGAAGTGTCTGGCCT
TGTCTAGTGCATCAGCTACTGCAAGGGCTTCACCTTCGATGGGGGCGTAG
CGGGATTCAGCAGCGTGGGTGAATCGGCTGCCAACAAGCACAACCTTCCA
ACCAGTGTTGCAGCAGAATGGTTTGATGTCCGGACAGACGCAGTGTTTCT
GGAACAGCCAATAACCAATACCGGATTTTGACCAATCGGTGGCAAGGCAG
GTTGGTTTCTTTTTATCGAATATGCGAACGCC

Coding sequence (CDS) from alignment at sc0000549:20976..21557

>TCONS_00025848 ID=TCONS_00025848|Name=TCONS_00025848|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000549:20976..21557 (Clytia hemisphaerica)
CTATCTGCCGGGAATGTAGCACATCTTGAATCGGTATCGAAGGGTTTTTT
CTTTCAAGTTACGTAAACGACCATTGGTGATCTTTTCGAGTGAGCGATCG
GAAAAAACACCAAGCAAGGGTTTGTGGTCCACTGCAACAATCAGGTCGTC
ACAGCCTAATACGAAGTGTCTGGCCTTGTCTAGTGCATCAGCTACTGCAA
GGGCTTCACCTTCGATGGGGGCGTAGCGGGATTCAGCAGCGTGGGTGAAT
CGGCTGCCAACAAGCACAACCTTCCAACCAGTGTTGCAGCAGAATGGTTT
GATGTCCGGACAGACGCAGTGTTTCTGGAACAGCCAATAACCAATACCGG
ATTTTGACCAATCGGTGGCAAGGCAGGTTGGTTTCTTTTTATCGAATATG
CGAACGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014529XLOC_014529Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025848-exon-sc0000549-1491911889:20976..21557TCONS_00025848-exon-sc0000549-1491911889:20976..21557Clytia hemisphaericaexon
TCONS_00025848-exon-sc0000549-1510915933:20976..21557TCONS_00025848-exon-sc0000549-1510915933:20976..21557Clytia hemisphaericaexon
TCONS_00025848-exon-sc0000549-1575043694:20976..21557TCONS_00025848-exon-sc0000549-1575043694:20976..21557Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025848-proteinTCONS_00025848-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000549supercontigsc0000549:20976..21557 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0927517	0	0	0.769604	0.608151	1.34513	2.17515	0.480907	0.397121	0.578183	0.696804	1.2019	1.70804	0	0.17388	0.357011	0.14637	0	0	0.0919622	0.134568	0	0	1.12332	3.55446	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top