TCONS_00025749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025749
Unique NameTCONS_00025749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length963

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025749 ID=TCONS_00025749|Name=TCONS_00025749|organism=Clytia hemisphaerica|type=transcript|length=963bp
CTGCTTCTCTCTGTCATTCTTATTTCTTTGATCCCACCTTAGGATCCAAT
GAAAAAGTCTATACTGCGGTCGAgcgatgatgatttttttaattaatttt
aatattcaatgttttattttttatacaagATTTTATAAGTTTAAAGAATT
TAAATAATAATGAGTTGTGGAAGACAAGGCTGCAGTTGGCTCACTTGCAC
ACTTTGCAGAACAAGTCATCAGTCTGCACAAACATTACAAAAAGCTTCAC
GTAGAAGTATTGAATGGCCAACACAAATTCATCAaccacccaatgaacaa
GATGGTAGTACAAACATTACAATTGATGATGCCTTTGATGATGTTCTACA
ATACATGACCACAACTGCACGGCAATGCAAACGTTATCATAGATCAACTT
GCAGACAGTTCACAAGTGACTCTGACCTTCTGCATCTAAAAAGGTACCAT
CAAAATCACAAAACGGCTAATTACAAATCCAATCCGCTGCAAAAAACAGA
AGAGGTAAATGTAGAAGTAGCTCCAGGAACATATGCTATTAGTGCAGGTG
CTTGGGGCTCTGATCGCCAGCATACTCATGTTATCCATATTAAAGACAAC
CAAACTGTAGACCTCAATTTTGGAATGTGAAGACAATCGCATAccgtact
attttgttttgtaaaatatgtaaatattttttattattattattgcagtc
ttttccacttttttatATCGCCTCAATTCTCAAATTTTGGATCAGAGTAT
AACTGTATgcttaaatattttgtaattaGGAAATTATTATGAATTTATTA
ATAGCAGAATACAATTTTGTACCTTTTTATTTGTTGATTTGAAGGATAAG
GGTAGGATCGGGGAGACTTAAGAAAGGCTCTTAATGCCTCATTATAGTAA
TTACCTTTCATTATTATCTTCGTCAATTTTGACACATTGTATTTAGATTC
ATTTAAATTCATA
Run BLAST on NCBI

transcript from alignment at sc0000545:141371..149377+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025749 ID=TCONS_00025749|Name=TCONS_00025749|organism=Clytia hemisphaerica|type=transcript|length=8007bp|location=Sequence derived from alignment at sc0000545:141371..149377+ (Clytia hemisphaerica)
CTGCTTCTCTCTGTCATTCTTATTTCTTTGATCCCACCTTAGGATCCAAT
GAAAAAGTCTATACTGCGGTCGAgcgatgatgatttttttaattaatttt
aatattcaatgttttattttttatacaagATTTTATAAGTTTAAAGAATT
TAAATAATAATGAGTTGTGGAAGACAAGGCTGCAGTTGGCTCACTTGCAC
ACTTTGCAGAACAAGTCATCAGTCTGCACAAACATTACAAAAAGCTTCAC
GTAGAAGTATTGAATGGCCAACACAAATTCATCAaccacccaatgaacaa
gtaaACAAAATTAAATTGTTATTTACACCTTATAGTTATTCAAACAATAT
TTTTCTGTCAATTTATGACTTTTTATTAAGGGAATTGTCTGAGAACATTT
GTGCCTGAGATAATTGTTCCTTCGGGCAAATGTCCTGGAGCACTTATTCT
GCCACAGTcaaatttgtaataaaaacaTTTGGATGCTGATTTAATTTCAT
CATAACAGATGAGAAACACACACATGGAGAGAAGTTAAAGTATTacaaaa
aacactgattttatcAAGTCTTTTTCTCTAGGATGGTAGTACAAACATTA
CAATTGATGATGCCTTTGATGATGTTCTACAATACATGACCACAACTGCA
CGGNAATAAACGGTTAGCcaccaaaaatactcattttattaacataattg
tcagccaactttgaaaatgtcacaaaacaggcctttatttttgaacacga
tcaagcggacgatggtgcggtccccgCCGTTTGTTTATATATATTTCATT
CAGTTGCCgtaagaatttcagcctcgagttcaagCAAGCAAAATAACAAT
TTGTTTCTGGACACACAAAAAGAACTTGCGATGTTCGATGCTCACATGTG
AATTCTTGAgtttaattttgtttattttgccgaACGTTATANacaacttt
ttaaatttagttctcaagttataagcttttttagtcaaaatgttgctttt
gaaaaagtccaaaaacacctttaaaatgGGATATGTGACCCTCCaaacga
tttggagtacattaaaaacgagaccggtcttggtgcaGTCGTGCTCGTGC
CGCTTTCCGACTGGTTAATTGTGCgtgtaaaagtttaaaaaagcgGCCAG
AAGGCCGCACAGTACCGTATGGTCTGTGCGTACAAAACGCCAACTAAAGC
GGTCatgttcaaaaatagtgtgacatttactgaactcaaaaatatagtat
ttcttgaataacttgaaaaatatttcaaatataacgTTGAAATTTTATAT
GATNCACCATGACCGCACTGAATACCGCACTTATTCAAATGGTGCTCTTT
AGTGACCGATCGAGTGCGTTTGAATGGAtttttagaaaagatttttgaat
gaTTTCTGGCCGATACAAAGCTATCATTTTACCGCACGGTAAATCGTTTC
GCCGCTTTTTTGCCGCACATTATATCGATCTGtccgcaccaagaccggtc
ttattcttaatgtactccaaatcgcttggggggtcacatatatcaaatta
atgcaattctatGCAGAAAACctctttattttcactattttattgttaat
tctGCATAGAATTGCGTTAATTTTATATCCcattttaaaggtgtttttgg
actttttcgtaACAATTGCGATCAATTAATGATCTCAcctgatttttata
aaattatccTAACAAAAGTTATggggaaaaataggaaaacagATTGTGag
cgatttttcaaaaaaatttagtgAAAAATGTTAAAGAATGTTTGATTTAA
TACCCCTTAAATTTAGATAAATTTTGGACTTTATCAAAAGTGcattttga
cttcaaaaactTATGATTAGGCCGaccctaaaaaaaaaaagtttccggtt
caccggccgggtgaaaatttttttcgtcgtcacccgggcgcatttttttt
taataagaaccaaATAGATAACAGAGGAAACTTTCTTCTTAAAAACCTTT
ACTCATTTAaactcccagctggcacacaacgttgtttcgacgtttatata
acgttaaaaagacgttatgaatgttagatggacgttgaaacaatgttgtg
tgccagctgggctgtTACATCGCTGCTTTATAACACTTGCACTCTTCAAA
AAGGTTTGCTTGTTTAGCATGCTTTCTGGATattaaagatcaaataaata
gtgttatgcatatttaaatgagtgaagaaaatatttgtttgtcTAGGAGG
CTTTCTGAACGTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ACTCAATCAGCTTTTTGTAATTAATAACGACACATTTCTTTCagtgaaag
agaaaaaaaggggACAGAATGTGTGGCAATATACTTTCTTTAACACTAAC
AGCCagagatgaatttttttcttcctaatttttttaattagaaaggacca
aaaaaaaatttttcccggcCGCCcgcatgactttttttttcgtcacccgg
tggaccggaaacgaaAAATTTTTTAGGGTCGGCCNACCCCTTAAATTTAG
ATAAATTTTGGACTTTATCAAAAGTGcattttgacttcaaaaactTATGA
TTAGTTTCCTACAAAACAAATTTTGGCACAACACATACTACATTAGCGAT
TTGAAAAGACAATGGATTTCTCATACAGCTCCGGGGTCTGGAATCAAATT
AGTAATTCCTAACAGGGATATGCCTTTGATTACCGGTCAAGCCCCTGCTT
CTCTCTGTCATTCTTATTTCTTTGATCCCACCTTGGGATCCAATGAAAAA
GTCTAGACTGAGGTCGAgcgatgatgatttttttaattaattttgatatt
caatgttttattttttatacaagATTTTATAAGTTTAAAGAATTTAAATA
ATAATGAGTTGTGGAAGACAAGGCTGCAGTTGGCTCACTTGCACACTTTG
CAGAACAAGTCATCAGTCTGCACAAACATTACAAAAAGCTTCACGTAGAA
GTATTGAATGGCCAACACAAATTCATCAaccacccaatgaacaagtaaAC
AAAATTAAATTGTTATTTACACCTTATAGTTATTCAAACAATATTTTTCT
GTCAATTTATGACTTTTTATTAAGGGAATTGTCTGAGAACATTTGTGCCT
GAGATAATTGTTCCTTCGGGCAAATGTCCTGGAGCACTTATTCTGCCACA
GTcaaatttgtaataaaaacaTTTGGATGCTGATTTAATTTCATCATAAC
AGATGAGAAACACACACATGGAGAGAAGTTAAAGTATTACAAAAAACCCT
GATTTTATCAAGTCTTTTTCTCTAGGATGGTAGTACAAACATTACAATTG
ATGATGCCTTTGATGATGTTCTACAATACATGACCACAACTGCACGGCAA
TGCAAAGTAACTTTATAATATGATGTTTTAGCCCCTCCCcccaaattatt
tttcattgatttgaaaataaattgtatatttttttgggAGTTTTGAAAGT
TATTATGTAGTCTATTTGTGACTCCTCAAGCAATTTTAACTGCCTGACCA
ATCTAACTGGTTTTGTGGTACAGTATAAGGAGTGGTCTTAGTAGcaatca
aatttttgctttagatCAGCCTTCAGATCTTCTAGAAAATTAGATTTCAA
ACTATTCTAGTTGCTTGTAAATCTTCATGGCCACTCATTAGACCAGTCCT
GGTTTCTCATTAGGCTAGTCCAGGTTATTCGTTAGATCCGCCATGGTCTT
TCTTTAGTGTTTGTGTGTAACAATTAcatccaaaaaaaagttttgaaagg
atAGAGACCGATATGGGACAGCTCTAATCCTTTAAATACATGCTTTGAAA
TGGCTGCTATTAGGGAGTCAGATTTCTTACTTATTTTTATGATAAAACAA
GACAGTAATTGGAAAAGCTATTATGCCAAATAATTCATTTTCACTTTCTC
CATGCTTATATGTAAATTTGTCTTTATATCTCAGCGTTATCATAGATCAA
CTTGCAGACAGTTCACAAGTGACTCTGACCTTCTGCATCTAAAAAGGTAC
CATCAAAATCACAAAACGGCTAATTACAAATCCAATCCGGTAAGTTATCA
TACAGGCTCTNTTCTCTAGGATGGTAGTACAAACATTACAATTGATGATG
CCTTTGATGATGTTCTACAATACATGACCACAACTGCACGGCAATGCAAA
GTAACTTTATAATATGATGTTTTAGCCCCTCCCcccaaattatttttcat
tgatttgaaaataaattgtatattttttttgggAGTTTTGAAAGTTATTA
TGTAGTCTATTTGTGACTCCTCAAGCAATTTTAACTGCCTGACCAATCTA
ANaggagagtgcactttattatcgtattaccttatatggaaactaattac
tctccatgaataagatagcctacctcctgtatccgaccctgtcATATAAT
GCATACAAAGTCAAAATCGTTTATCCTCATTCTTTCcctattttaatttt
tagtacTTATACTAGCCGTCACCtagcgtcgcacccgccgaggagtagat
aagcttAACGTatcataagccctttggatggtggggagAGTATTAAGATT
TGATCTTTAAGCCCAATGAACTAAAAGTTACCACTTTTTTAAAtggttga
aaactaaaaatattgcaaatttaatGTTTTACTGTAGGGCCAAAATGATG
TCATCGAATGAgcaataaacttttcacttgacttaaaatatttcttcatt
gaccaaatagattctcttgatgatttctGATACAATGAGGGGTTAATCAT
TGTTTTAATCCTTGTCAAACTAGAGATatcacttttttttgttttgatga
cgtcatcaactgaaaacgcctaaaaattcagccaaatttgaaagtcacAC
TTAAGCCTCATAACCCCTCCCATCTTATTTTCCATAGagttctcgatcca
atgaggggtcaacgacctcccaactccttttcaattGAAGATATTCCCAA
ATCAACGGTCACTTcgcgaattttggaatttttgcagTCAATGGGTAGCT
TATgcccccaagggtcccaaaaaaacaaaaaacgtcaacTATTTCCAAGA
GAAAGTGAgtttttaaatttgcaaaagattgACACTTCAACGACTTCTCC
CCcaaattttcacactcttcccctggtcaggctgaccactttcgctttcg
ttttcaaccacccatcCAAACAATCGGTCACGTGACtgtcgaacccccat
ctcaaataTCCATAATGATCCCCTCACGTTTCACTcacattagactttta
gtatatagattATTATTCCCAATGGAATTTACTTTACTTTACTTGGAAGT
AGAATAGAAGTTAATCATTCTACACTTGGGGTGAAGCtgatataccgggt
gcgccacaaaagagtttctctctttgaaactaattttctcaaaatctaaa
gtttttaaaagaaccactcctatttcattggaaagaagaaagatagactt
aaattttgatgggtcatttatttaattcgattcattagaacaaaagttat
gctcaattgaataaaaaagttactttcagaaagtgctcgaaaacgtcaaa
aatcgacctatcaaatttttactttaaatttggcaattgcaATAGTCTTA
ACataattaagagcatttttccgtaacaaaacacataaattttgaaacga
aAGGGTCGAAAAAGTCAAcattaaaatttaatttggttTTACTGgaattt
ttcttagatttttggttctagactggataaagtctatgtaaggctggatc
tacctcgaaacccatatttgatgtatttttatgaattttaccagattatt
tggccttttacgacgaattttcttcctttcattgaaattcaaccttattt
taaataacttcaacctttctttaaataacaaaaggtcatttagacagcta
actatcatttttaatgactgaaacgaaaatactgatatatcatAAAACTA
ttcttctgtttaatttgataggtcgatttttaacgtttttgagcattttc
tgaaagtaacttttttattcaattgagtataacttttgatctaatgaatc
gaatttaataaatgacccaccaaaatttaattttatctttCTTATTTCCA
TTGAAatagaaatggttcttttaagacttttagatttcgagaaaattagt
tttaaagagagaaacttttttgtggcgcacccggtattatatgtgttttt
taaagttgacaaataaaagtataattttgaatcagctcttttttttaatt
ttaagttcGTTTTTCTTGGATTTAGAGTGTCagcattttggaaaattttc
cctCAATTTGATTCTCTCGAATACTCTCAGGTGGCTGATAAACAGGGGGT
TGGGGGGTGGTGGAAATTTACAGGGGGGACAGGGGGGGTATTCACAGGGG
GATTGGAAATTGTACCTCTAAATACTCCAGAAGAAGGTAATTATAGACTA
AAACCtggatatttattttttcttgtgccaggtgaaaatattttcaaaaa
taaataaaccaaGGGGTCCTAATTAAGGTTCAGGagattggaaaaaaatc
gaaaaaattaacaTCAGACCAGAAGAGAACGCCCCCTAGAACGGCGATTC
GTGCATAAAATAGATTTAGTTTGCTCTGGAATGGAGACATTCCATATCAA
TATTTGTGATGAAATATAACTGGCCACATTGAATATTGGAAAATTGAtta
attgtttttgaatgactttttgaagatctttatcttttttatgactttta
ataataattatttcaaaCTTTATCTTATAGCTGCAAAAAACAGAAGAGGT
AAATGTAGAAGTAGCTCCAGGAACATATGCTATTAGTGCAGGTGCTTGGG
GCTCTGATCGCCAGCATACTCATGTTATCCATATTAAAGACAACCAAACT
GTAGACCTCAATTTTGGAATGTGAAGACAATCGCATAccgtactattttg
ttttgtaaaatatgtaaatattttttattattattattgcagtcttttcc
acttttttatATCGCCTCAATTCTCAAATTTTGGATCAGAGTATAACTGT
ATgcttaaatattttgtaattaGGAAATTATTATGAATTTATTAATAGCA
GAATACAATTTTGTACCTTTTTATTTGTTGATTTGAAGGATAAGGGTAGG
ATCGGGGAGACTTAAGAAAGGCTCTTAATGCCTCATTATAGTAATTACCT
TTCATTATTATCTTCGTCAATTTTGACACATTGTATTTAGATTCATTTAA
ATTCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014463XLOC_014463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025749-exon-sc0000545-1491911889:141371..141670TCONS_00025749-exon-sc0000545-1491911889:141371..141670Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1510915933:141371..141670TCONS_00025749-exon-sc0000545-1510915933:141371..141670Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1575043694:141371..141670TCONS_00025749-exon-sc0000545-1575043694:141371..141670Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1491911889:141952..141966TCONS_00025749-exon-sc0000545-1491911889:141952..141966Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1510915933:141952..141966TCONS_00025749-exon-sc0000545-1510915933:141952..141966Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1575043694:141952..141966TCONS_00025749-exon-sc0000545-1575043694:141952..141966Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1491911889:145411..145476TCONS_00025749-exon-sc0000545-1491911889:145411..145476Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1510915933:145411..145476TCONS_00025749-exon-sc0000545-1510915933:145411..145476Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1575043694:145411..145476TCONS_00025749-exon-sc0000545-1575043694:145411..145476Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1491911889:146055..146159TCONS_00025749-exon-sc0000545-1491911889:146055..146159Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1510915933:146055..146159TCONS_00025749-exon-sc0000545-1510915933:146055..146159Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1575043694:146055..146159TCONS_00025749-exon-sc0000545-1575043694:146055..146159Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1491911889:148901..149377TCONS_00025749-exon-sc0000545-1491911889:148901..149377Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1510915933:148901..149377TCONS_00025749-exon-sc0000545-1510915933:148901..149377Clytia hemisphaericaexon
TCONS_00025749-exon-sc0000545-1575043694:148901..149377TCONS_00025749-exon-sc0000545-1575043694:148901..149377Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000545supercontigsc0000545:141371..149377 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.7213	25.2553	16.4696	26.7807	35.8828	37.3805	20.0723	27.3463	6.87617	5.18441	3.95381	2.83536	3.30332	3.35898	1.51091	1.39478	2.53014	3.27576	0.304142	0.986615	3.04078	1.61915	11.7425	12.2045	42.2837	34.8518	1.70266	2.0767	2.95179	2.60789
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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