TCONS_00025774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025774
Unique NameTCONS_00025774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025774 ID=TCONS_00025774|Name=TCONS_00025774|organism=Clytia hemisphaerica|type=transcript|length=359bp
CCTTCTAATACGGGCCCGAAACAGTGGTCCTTCTAGGTAAAATTCCGACG
GCAACAGAGCCTTATTCTAGGTCTTTATATTACATTTTCAATCGGTACAA
CATAAATTATGCCTTCTGCCATCTTTGAATAAATTTATTCTCTAGTTACA
TAGCAACGGATAATTAATGCAAAATTAAAATCAAATTTATGCATTCGAAA
GCTGCCATTTTGTGTACCACTTTTCAAACAAACTGCgcgaaacaaaacaa
atttgctTTTTGCTTGGTGGAGATTGAGAATTTACCACTTTTAACACAAA
GGACACAAACGATCATTTGGAATTAGGTGGCAAAAAATGTAAGCACTTTT
GCCACTTNN
Run BLAST on NCBI

transcript from alignment at sc0000545:127092..127450

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025774 ID=TCONS_00025774|Name=TCONS_00025774|organism=Clytia hemisphaerica|type=transcript|length=359bp|location=Sequence derived from alignment at sc0000545:127092..127450 (Clytia hemisphaerica)
NNAAGTGGCAAAAGTGCTTACATTTTTTGCCACCTAATTCCAAATGATCG
TTTGTGTCCTTTGTGTTAAAAGTGGTAAATTCTCAATCTCCACCAAGCAA
AAagcaaatttgttttgtttcgcGCAGTTTGTTTGAAAAGTGGTACACAA
AATGGCAGCTTTCGAATGCATAAATTTGATTTTAATTTTGCATTAATTAT
CCGTTGCTATGTAACTAGAGAATAAATTTATTCAAAGATGGCAGAAGGCA
TAATTTATGTTGTACCGATTGAAAATGTAATATAAAGACCTAGAATAAGG
CTCTGTTGCCGTCGGAATTTTACCTAGAAGGACCACTGTTTCGGGCCCGT
ATTAGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014480XLOC_014480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025774-exon-sc0000545-1491911889:127092..127450TCONS_00025774-exon-sc0000545-1491911889:127092..127450Clytia hemisphaericaexon
TCONS_00025774-exon-sc0000545-1510915933:127092..127450TCONS_00025774-exon-sc0000545-1510915933:127092..127450Clytia hemisphaericaexon
TCONS_00025774-exon-sc0000545-1575043694:127092..127450TCONS_00025774-exon-sc0000545-1575043694:127092..127450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000545supercontigsc0000545:127092..127450 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.844348	0	0.821954	0.956874	0.260067	0	0.712572	0.235643	0	0.583878	1.16596	0.551734	1.40059	0.204502	0.191465	0	0	0.616054	0.684611	1.71859	2.20707	0	0.250103	0	0.230773	0.433173	2.75868	0.318917	2.28539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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