TCONS_00025741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025741
Unique NameTCONS_00025741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025741 ID=TCONS_00025741|Name=TCONS_00025741|organism=Clytia hemisphaerica|type=transcript|length=595bp
TCGGAAGGTGAATACCCAAAGTCGATTCTCAACTTAAGGAACACTGTTAT
CAAAAATGTTGAGAATTTTATCTATCTTGGCACATATATCCGTTTCGATC
AACCTAACACAGGAGATCCAGAGATCAACCATCGAATACAGTTAGCGATC
AGTAAATTCACTGATATGGGCAACTTGCTCTAAAATATGAGGATAAATCT
TAaaacgtgtattaaatttctgAACAGTTTTGTACGCAGCACGCTGACAT
ATGCGTGTCAAAATTGGAACACTAACACCAACCAAATGGATCGACTTGAC
GCTACCTATCGTGGATTTCTACGACGTATGGTTCGAGGAGGTTATCGATA
cataaatgaaagtgaaaatgattATCGATATTATATCACCAATGAAGAAC
TACATAACCTTTGTGGGACTTCAGATTTGTCGACTTTTATTCGTAAGCAA
CAACAAAATTATGTCCAACACGTTATTCGAATGCCCGTACATCGTTCCGT
TAAATTGCTTGCCTTCAATTGTGATAAGTACACAAAAAGAGGAAGGCCTT
GTAAAACTCTTCTCGATCAAGTGGTTGATTCGAGTGGACTGTCTT
Run BLAST on NCBI

protein sequence of TCONS_00025741-protein

>TCONS_00025741-protein ID=TCONS_00025741-protein|Name=TCONS_00025741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MRINLKTCIKFLNSFVRSTLTYACQNWNTNTNQMDRLDATYRGFLRRMVR
GGYRYINESENDYRYYITNEELHNLCGTSDLSTFIRKQQQNYVQHVIRMP
VHRSVKLLAFNCDKYTKRGRPCKTLLDQVVDSSGLS
Run BLAST on NCBI

transcript from alignment at sc0000544:154554..155148

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025741 ID=TCONS_00025741|Name=TCONS_00025741|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0000544:154554..155148 (Clytia hemisphaerica)
AAGACAGTCCACTCGAATCAACCACTTGATCGAGAAGAGTTTTACAAGGC
CTTCCTCTTTTTGTGTACTTATCACAATTGAAGGCAAGCAATTTAACGGA
ACGATGTACGGGCATTCGAATAACGTGTTGGACATAATTTTGTTGTTGCT
TACGAATAAAAGTCGACAAATCTGAAGTCCCACAAAGGTTATGTAGTTCT
TCATTGGTGATATAATATCGATaatcattttcactttcatttatgTATCG
ATAACCTCCTCGAACCATACGTCGTAGAAATCCACGATAGGTAGCGTCAA
GTCGATCCATTTGGTTGGTGTTAGTGTTCCAATTTTGACACGCATATGTC
AGCGTGCTGCGTACAAAACTGTTcagaaatttaatacacgtttTAAGATT
TATCCTCATATTTTAGAGCAAGTTGCCCATATCAGTGAATTTACTGATCG
CTAACTGTATTCGATGGTTGATCTCTGGATCTCCTGTGTTAGGTTGATCG
AAACGGATATATGTGCCAAGATAGATAAAATTCTCAACATTTTTGATAAC
AGTGTTCCTTAAGTTGAGAATCGACTTTGGGTATTCACCTTCCGA

Coding sequence (CDS) from alignment at sc0000544:154554..155148

>TCONS_00025741 ID=TCONS_00025741|Name=TCONS_00025741|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000544:154554..155148 (Clytia hemisphaerica)
AGACAGTCCACTCGAATCAACCACTTGATCGAGAAGAGTTTTACAAGGCC
TTCCTCTTTTTGTGTACTTATCACAATTGAAGGCAAGCAATTTAACGGAA
CGATGTACGGGCATTCGAATAACGTGTTGGACATAATTTTGTTGTTGCTT
ACGAATAAAAGTCGACAAATCTGAAGTCCCACAAAGGTTATGTAGTTCTT
CATTGGTGATATAATATCGATaatcattttcactttcatttatgTATCGA
TAACCTCCTCGAACCATACGTCGTAGAAATCCACGATAGGTAGCGTCAAG
TCGATCCATTTGGTTGGTGTTAGTGTTCCAATTTTGACACGCATATGTCA
GCGTGCTGCGTACAAAACTGTTcagaaatttaatacacgtttTAAGATTT
ATCCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014457XLOC_014457Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025741-proteinTCONS_00025741-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025741-exon-sc0000544-1491911889:154554..155148TCONS_00025741-exon-sc0000544-1491911889:154554..155148Clytia hemisphaericaexon
TCONS_00025741-exon-sc0000544-1510915933:154554..155148TCONS_00025741-exon-sc0000544-1510915933:154554..155148Clytia hemisphaericaexon
TCONS_00025741-exon-sc0000544-1575043694:154554..155148TCONS_00025741-exon-sc0000544-1575043694:154554..155148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000544supercontigsc0000544:154554..155148 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.620692	0.842168	0.776577	0.37986	0.638172	0.836306	0.66568	1.03601	0.492257	1.86298	0.691746	0.26748	0.591554	0.744228	0.110218	0.0834014	0.206992	0.161495	0	0.175596	0.578641	0.201566	0.458313	0.095809	0.628835	0.25057	0.199911	0	0.752207	0.330206
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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