TCONS_00025738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025738
Unique NameTCONS_00025738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025738 ID=TCONS_00025738|Name=TCONS_00025738|organism=Clytia hemisphaerica|type=transcript|length=609bp
ATAATATTTTACAAAGTCATTCTCActgtttataattttatttttgttct
acTTTTGGTCTTCCACCAAGTTGATTCCTGATATGATTGTAACAAGCTCC
ATAGCTTCAATTCCTGGTTGTCCCAGTAGTGGAGTGGGTACTTGGTCACA
GATATATCACTTCAAACATTGACTTTTTCCCAATTCAGGCTCGTAACGAA
ACACCCGTGTCATTTAAATCTATGCTTATCAGGTCCAACTAACTTTCAAT
CAAGTTTACTCAAATTTTTCAGCTGGAttccaaataaagaaaaatgtttt
ttttccaataaCTAAAACTCTGCGGCAGTGTCGatcttcattttgatttt
gatcaaaGTAACTctatttactttgattttagaatttgtCTTCTCTATCT
TCATTGCAACTTGATATCTGTTCTGATTGCTGTTCGTTGATCTTGTCACT
TCCCCCAAGAAAAAAACTCCTATCTCGCTTTCATCCCCTTGAATATAAAG
TCTGTATTATTACTATCcctattccaggctttatttgaTGGTCCTTTACA
CACTGAACTTTGAGAGAAATGATTAGAACCTTCACATCGAAAACATTTCT
TTTCCCTCG
Run BLAST on NCBI

transcript from alignment at sc0000544:124459..125067

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025738 ID=TCONS_00025738|Name=TCONS_00025738|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at sc0000544:124459..125067 (Clytia hemisphaerica)
CGAGGGAAAAGAAATGTTTTCGATGTGAAGGTTCTAATCATTTCTCTCAA
AGTTCAGTGTGTAAAGGACCAtcaaataaagcctggaataggGATAGTAA
TAATACAGACTTTATATTCAAGGGGATGAAAGCGAGATAGGAGTTTTTTT
CTTGGGGGAAGTGACAAGATCAACGAACAGCAATCAGAACAGATATCAAG
TTGCAATGAAGATAGAGAAGacaaattctaaaatcaaagtaaatagAGTT
ACtttgatcaaaatcaaaatgaagatCGACACTGCCGCAGAGTTTTAGtt
attggaaaaaaaacatttttctttatttggaaTCCAGCTGAAAAATTTGA
GTAAACTTGATTGAAAGTTAGTTGGACCTGATAAGCATAGATTTAAATGA
CACGGGTGTTTCGTTACGAGCCTGAATTGGGAAAAAGTCAATGTTTGAAG
TGATATATCTGTGACCAAGTACCCACTCCACTACTGGGACAACCAGGAAT
TGAAGCTATGGAGCTTGTTACAATCATATCAGGAATCAACTTGGTGGAAG
ACCAAAAgtagaacaaaaataaaattataaacagTGAGAATGACTTTGTA
AAATATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014454XLOC_014454Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025738-exon-sc0000544-1491911889:124459..125067TCONS_00025738-exon-sc0000544-1491911889:124459..125067Clytia hemisphaericaexon
TCONS_00025738-exon-sc0000544-1510915933:124459..125067TCONS_00025738-exon-sc0000544-1510915933:124459..125067Clytia hemisphaericaexon
TCONS_00025738-exon-sc0000544-1575043694:124459..125067TCONS_00025738-exon-sc0000544-1575043694:124459..125067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000544supercontigsc0000544:124459..125067 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.177389	0	0.100424	0.0982495	0.239219	0.0945169	0.342092	0.320262	0.334985	0.111696	0.269578	0.35442	0.353927	0.306297	0.631712	0.540478	0	0.13649	0	0.789292	0.117522	0.376453	0.305086	0	1.0475	0.679904	0.243235	0.259587	0.393775	0.300896
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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