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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025702 ID=TCONS_00025702|Name=TCONS_00025702|organism=Clytia hemisphaerica|type=transcript|length=2349bpRun BLAST on NCBI protein sequence of TCONS_00025702-protein >TCONS_00025702-protein ID=TCONS_00025702-protein|Name=TCONS_00025702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp EKNSWNVQVFEFLFVCKTLLCKLRVNFLKSYSQLKFKKMFDTFFATAEYVRun BLAST on NCBI transcript from alignment at sc0000543:62395..79141+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025702 ID=TCONS_00025702|Name=TCONS_00025702|organism=Clytia hemisphaerica|type=transcript|length=16747bp|location=Sequence derived from alignment at sc0000543:62395..79141+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000543:62395..79141+ >TCONS_00025702 ID=TCONS_00025702|Name=TCONS_00025702|organism=Clytia hemisphaerica|type=CDS|length=26775bp|location=Sequence derived from alignment at sc0000543:62395..79141+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00025702 vs. Swiss-Prot (Human)
Match: LMBR1 (Limb region 1 protein homolog OS=Homo sapiens GN=LMBR1 PE=1 SV=1) HSP 1 Score: 353.599 bits (906), Expect = 3.836e-112 Identity = 216/464 (46.55%), Postives = 310/464 (66.81%), Query Frame = 1
Query: 154 EQDFYNAIREYIISLLTFIFVYFMSYLFISRYKRKIEESDYEDDLVYRVSIWLCCFTMTVSIGAVLLLPFSIFSNEILISYQSSFYMKWLNDSLIHGLWNQIFLGTYIAMFLAMPFAYFFTESEGFAGSRKGIKSRIYETXXXXXXXXXXXXXXXXXXXAFMSGEKGGWLASVSETWMPPLPFIYSCISLFGALLLLICTPLGFATLFTILGNVIVRPKFFIDLDDQIQALIFEEEDIRRKLMRSLSYTGLKTTDTKE--SLEAKLSTAKEKRLKLERERDASVFEKTXXXXXXXXXXXXXTAVCLLMVAVNSFRLVFGQQDLPFTDKYPSLGKMSISKLGWXXXXXXXXXXXXXXTASVVGFYSSPFFIHLKPKLRNTSTTTLIANCIIFLIFSSALPVLVRTLGITSFNLMGEFGRLDWLGNYELVLFYNLLFEASTSFCLVNKFTKSVRDALYEQFKYSSL 1539
EQ F++ +RE I L F +Y +SY I+RYKRK +E + ED +V R+S++L FT+ VS GAVLLLPFSI SNEIL+S+ ++Y++WLN SLIHGLWN L + + +F+ MPFA+FF ESEGFAG +KGI++RI ET V+L LL +L+ VWV SA + + + S+ + W LP++YSCISL G LLLL+CTP+G + +FT++G ++V+P DLD+QI + EEE ++R+L GL ++ LE +L K + KLER + AS +E+ L+YP ++ LL T++ +L+VA N L+ + +P + P +G S+S G+ G L+I LIFY++ +SVVGFYS FF + PK +T+ T +I NC+ L+ SSALPV+ RTLGIT F+L+G+FGR +WLGN+ +VL YNLLF T+ CLV KFT +VR+ L++ L
Sbjct: 11 EQHFHSQVRESTICFLLFAILYVVSYFIITRYKRKSDEQEDEDAIVNRISLFLSTFTLAVSAGAVLLLPFSIISNEILLSFPQNYYIQWLNGSLIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARILETLVMLLLLALLILGIVWVASALIDNDAAS-MESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTVMGQLLVKPTILEDLDEQIYIITLEEEALQRRL------NGLSSSVEYNIMELEQELENVKTLKTKLERRKKASAWERNLVYPAVMVLLLIETSISVLLVACNILCLLVDETAMPKGTRGPGIGNASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRFFGNFTPKKDDTTMTKIIGNCVSILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIVTTLCLVRKFTSAVREELFKALGLHKL 467 The following BLAST results are available for this feature:
BLAST of TCONS_00025702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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