TCONS_00025498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025498
Unique NameTCONS_00025498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025498 ID=TCONS_00025498|Name=TCONS_00025498|organism=Clytia hemisphaerica|type=transcript|length=431bp
atattttttatgtttctttaTCAAACCGTTGTCTCCAAAACAATTACCAC
ATTATTGACACTCAAATGATTTTACATCTTGTACACTGTTCTTTGATGTG
CTTACAAATGACTTTCCCAtgcaaaagatttaccacattcttgacattta
aaaagttttattctATTGTGAACATTTTCTTGACGAGCCTTAAAAAGTTA
CTTTTATCCCCGAAAGATTTACCACATTAATGAGAATCAAATGCCTTGAT
TTATCCCTTGATGGACAATCCTTTGATGAGAAGTATATATATTGCAtcca
aaagatttaccacaaTACAATCTTGACATTTAGAAGCCTTTACAACTTCA
TGAACAATTATTTGGTGAAAAATTAGGTTTCTTTTCTCTACAAAACATTt
acaaaattaagaacatttaaaggcccttata
Run BLAST on NCBI

transcript from alignment at sc0000536:220254..220684

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025498 ID=TCONS_00025498|Name=TCONS_00025498|organism=Clytia hemisphaerica|type=transcript|length=431bp|location=Sequence derived from alignment at sc0000536:220254..220684 (Clytia hemisphaerica)
tataagggcctttaaatgttcttaattttgtaAATGTTTTGTAGAGAAAA
GAAACCTAATTTTTCACCAAATAATTGTTCATGAAGTTGTAAAGGCTTCT
AAATGTCAAGATTGTAttgtggtaaatcttttggaTGCAATATATATACT
TCTCATCAAAGGATTGTCCATCAAGGGATAAATCAAGGCATTTGATTCTC
ATTAATGTGGTAAATCTTTCGGGGATAAAAGTAACTTTTTAAGGCTCGTC
AAGAAAATGTTCACAATagaataaaactttttaaatgtcaagaatgtggt
aaatcttttgcaTGGGAAAGTCATTTGTAAGCACATCAAAGAACAGTGTA
CAAGATGTAAAATCATTTGAGTGTCAATAATGTGGTAATTGTTTTGGAGA
CAACGGTTTGAtaaagaaacataaaaaatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014314XLOC_014314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025498-exon-sc0000536-1491911889:220254..220684TCONS_00025498-exon-sc0000536-1491911889:220254..220684Clytia hemisphaericaexon
TCONS_00025498-exon-sc0000536-1510915933:220254..220684TCONS_00025498-exon-sc0000536-1510915933:220254..220684Clytia hemisphaericaexon
TCONS_00025498-exon-sc0000536-1575043694:220254..220684TCONS_00025498-exon-sc0000536-1575043694:220254..220684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000536supercontigsc0000536:220254..220684 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.72806	1.78859	2.6815	2.43377	1.29307	0	0.270254	1.23351	0	0.543881	0.211477	0	0	0	0.134838	0.351138	1.05348	0	0	0	0.45933	0.566136	2.22451	0.878158	0	0	0.342212	0.701587	1.00527	0.519196
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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