TCONS_00025474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025474
Unique NameTCONS_00025474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2867

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025474 ID=TCONS_00025474|Name=TCONS_00025474|organism=Clytia hemisphaerica|type=transcript|length=2867bp
GACCTTATTCTCTTTATATGAAGGACTTTTGGtataaaaacatacaaaaa
tgAGTAATCGTAATAGAAATAACCTTCCTAACAATCTTGCACAACTACAG
AATCTCATCAAAAGAGATCCAGAGTCATACAGGGAAGAATTTCTACAACA
ATGGAAACATTTTCAatccaatttggaaattttcaaactggaTCCAACCA
GGGAGGCTGAAGCTGTAGAAGATGTCATGAAATTCATTGCCCAGGTTGGC
AACTGTTACGAGTCCATCATCGAAGGATTTCCGGAAACATTGATGGATAT
ATTGTCACAGCATTATTCAGTCATGAATCCTAACCTCCGAATGAGTATGT
GTAAATCTCTGATATTGATGCGAAACAAAAATCTCATCTCACCATTGAAA
TTAttggaattatttttcaaacttttaaaagctaaagataaacttttgcg
aaagACACTTTATAATCATATTGTGACTGACATCAAAAATGTGAATCAGA
AaagcaaaaataacaaaataaatactGTATTGCAAAATTATATGTTTTCA
ATGCTGAAAGATAGTAGTCCCATTGCTGCAAAGATTTCAATGGACATTAT
GGTCGAGTTGTATCGTAAAAACATTTGGAATGATACGAAAACAGTTAATG
TCATTGTTACCGGTTGTTATTCCAAAATCACCAAAGTTATGGTGACtgca
ttgaaatttttcttgggAACGGATGCCCCTGAAGAGGTCAAAGCGGATTC
TGATTCTGAAAGTGAGGATGACaatgaaaaagccaaaaagCTGATCATTG
CTGGCCAAGTCAGCAAGAAAACAGGcaaaaagaaacgaaaaatggaaaaa
gcaTTATCGATGTTACGTAAAGCTAAAAAGAAACAGAAGCCAGttagttt
caatttttcagctaTACACCTTATCAATGACCCACAAGGTTTTGCTGAGA
AGCTTTTCAAACAGTTGGAAAGCTCTACCGAACGATTTGAAGTCAAACTG
ATGATGATCAACCTTATAGGACGGCTTGTTGGCATTCATGAGCTGATCCT
GTTGAATTTCTACCCgtttttacaaagatttttacaGCCTCATCAAAGAG
AAGTTACCAAACTTCTGATGACTTCAGCACAAGCTACACATGATCTAGTT
CCGCCTGATGCTATCGAACCAGTATTAAGGACCATTGCCAATAATTTTGT
ATCCGAAAAGAATTCTACTGAGGTAATGGCAGTTGGATTGAATGCAATCC
GTGAAATATGTGCGCGTAACTCTCTGGCGATGTCAGCAGAATTGCTTCAG
GATTTGGTAGAGTACAAAACCACTAAAAGCAAAACAGTAATGATGGCTGC
TCGATCTCTCATACAACTATACAGGAATTTTGATTCAACTCTATTACGGA
AGAAAGACAGAGGAAAGCCTCAAGAGCCATCCATGATTGGGGAAGAAGTT
GGGAGTAAACAATTTGGAGCGAAAACTGCCCTCACTTTTGTGCCAGGTGC
TGATCTACTAGACAACGAAACAGAAACAAAGGAgaagacaaagaagaaaa
agaaagaagtgAGCGAGGATGGAGAGAAAGACAAGGattctgaaaacgaa
agtgaaagtggtaGCGAAGCAGAAGATGAGGACAATGAAGACTGGGAAAC
TGATGAAGAAGAAGACGAAGATGTTGGAAGTGATGGTGAAGACAGTGACG
GTTGGATAAACGTTTCACATTCTGAAGATGATatggaagaagaagatgaa
gaagatgatgAAGATACACAACAAGAAAAAGAGGATGCAAGAGCAAAAGC
AGAACAAGTCAGCCAAACCAAATTTCTAACGGACGACGATTTCAAAAAGA
TACAGCAGAAAGCTATCTCACAGCAAATTGAAAGTGGGCCAAGTGCAGGT
AAGcgaggcaaaaaacgtaaacaaacAACCGCCGCGTCTGGACAAGAAAA
AGAGAAGTCGGAACTGGTCGACTTGGCTAGCATAGAGAATGTTGTAAAGA
AGATGAAACATGATAAGGAATCAAGACTGGCTACCGTACTCGCTGGTAGA
GAAGGCCGCGAGAAGTTCAGTAAACCAAAACAGAAACGACAAAACGAGCA
CGCCAGTACCACCAATAAAGAGAAGATCAAATCGAAACCATTTATGATGA
TCAGTCACAGTCAAAGATCGCGTGGCAAAGGAAAGAAATCATTCCGCGAT
AAACAAATCGCTTTAAGAGATTCAATGCTGAAGAAAGATGGGAAAACTAA
GAGCGGAAAAAAAAGGAAGCACTAGTCTATATTTTGAATTGGTGTAAaac
aatttttagatttttatatgCCTTTATAATGATCATTTTTAGATATAAAT
CAATGACAAATTTATGCTCCTTTTCTAATGTTCTGCCTTTTTCACGTAGG
ACTTCAGGTCAGGATGTcgataaaaaaggaaaatagaATCTGATATGGAT
AAGAAATTCTTAAATTGAATATCatgcttttttaagttttacgaGCACAG
ATTTCGATTAACTATTTTGCAGTTGAATAATGTAACGAAGAACAAACTAC
TCCTTTACAAACTACTGATTTAAATGGTATATTCAATATTTAATACCTTT
TTCAAGTTATGGAGAATTTGGCGGATGTAAAGATGAATAAGTAAATTGTA
TTGGCCTTTTTCGCTAAAATTCCATACATGGATTACCTTCATATTCAAAT
CAAATGATAAATTCTAGTCTAATTTGaatattctatcaaaattaggCGAT
AATCAGCCACTTTATCCTAATTAGAATATATTATTTCCTGATTAGTTCCT
GATTGTTTAATATGTTCGAGcattcaaaaatttcaatattttgtccCCAT
TATACCCTCTATATTAG
Run BLAST on NCBI

transcript from alignment at sc0000536:197541..214465+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025474 ID=TCONS_00025474|Name=TCONS_00025474|organism=Clytia hemisphaerica|type=transcript|length=16925bp|location=Sequence derived from alignment at sc0000536:197541..214465+ (Clytia hemisphaerica)
GACCTTATTCTCTTTATATGAAGGACTTTTGGtataaaaacatacaaaaa tgAGTAATCGTAATAGAAATAACCTTCCTAACAATCTTGCACAACTACAG AATCTCATCAAAAGAGATCCAGAGTCATACAGGGAAGAATTTCTACAACA ATGGAAACATTTTCAatccaatttggaaattttcaaactggaTCCAACCA GGGAGGCTGAAGCTGTAGAAGATGTCATGAAATTCATTGCCCAGGTATAA ATTGTAGTCAGTTTGAGgctgagaatttttttttagaaatattaatttta tcatgatgacaaaatgttataaatggtgaaggcttcttcgttaaaagcga aagacatgtatctatttttcggatccggcatgtAGGAATAGTgcatagtg tcaggacctgcaggcgacctggtagggttgggtatgggcgtggtttgggt gtggttacgtatcagattggctaggaatttggttattatcagttagggtt agggttggagctcgaaaaaagcactcttttgtgattttctcttaatacag tctggtctacagtttgtacaatataagtAGCCATCAGAAACGCTCTttcg gcatgaatccgtggcgcagtggatataaggcattgggtttcaaaacatcg gaactttgcatttagtgggttcgaatcccaccggtggcgatctgtcggta cacgtgcgtttgcgtagggtaaaatggcgaaatgcgaaaatcgaatttgg caaaaaaaatttgaaaaaatgaccctacaagatttgactatatcttttta ttccatgaagagattactttcaaataaaaaatgtattaacaatgaatggt taagctttctagaaatccaaacataaattgtatAGCTTCTACCAAAatat agcactttaggatcagaaacagtcaaaaaccagttttttccaattttctt cgagttacaggaattaattccttgtttgttttgatctgaaattttcagta ggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNacagaatttcaaaaaatctgttagttc tggagatatattgaaaagtttagacatgggtagtttgcgttcgtgtttcg cgttcccaaaccaaacgcacgtgggtaagtcattcagtaagttagaaaac atagtaaataactcacacagaaccagaaagtcagaaaactacgaacaaga gactggaaagtacgaaataagtccagatatgtctttcgtctttacaaAGA AGCCACAACCGTTATAaatccagacccgatcaatcgaacaagtcgaacca atcaaactaactctttttaacttatttattttattttatcctttatgttt aaaatcacgaaaatgtacTTATGTATTATGTGATAGTTCAATAGAANcct gtatttctatttgtgaccccctgtatttcgcgcGGGCTTTTTAATAGATA AGTCACATGACtgaaatcccgcagtcttattggactagagaaagcgaaag tgaaatcgcgcgatctgattggatgaaaaaagaccgcgggagctggaaac gaatgNgaactaatcaaactccatTGAACAATTAACGTAACTTGGTATAA TGtagacacccctcctctaattccgacaccgtttttatcagctgaaattt atagaaaggttgaaactgtgtTTCTTTGcatagtggtcagagaggaataa tcccttttcaatcagtgattcaagctttcataatATTCCTTTCTTTAAGG AAGGGTGTCAGagttagacgagggatgtcgatattagaccaacttacagt aaagtttgagtaaaaaaattaatcaaactccagattttttaaaaaatttg tgagtgttcgattaagttagATCCAGTTTGATCAATGGCAGTATAGACTA AAACTCATATATCAAGGTTACAGGATTTCGAGTGTGCAGTATAGACTAAA ACTCATGTCATATATCAAGATTACACAGTCagtcaagaacaagtgcaaat ATGATACCTTCGGCAATCTCTCCTACTTAGGAGAGTATCTTTTAAactgc tcaattgaataaaaaagttactttcgaaaagtgctcaaaaacgttaaaaa ttgacctatcaaattaaacagaagcataattacatgatactgTACATCGg cattttcgtttcagtcatttaaaatgataattagctgtctaaatgacctt tagttatataaaggaaggttgaatttcaatgaaaggaggaaaattcgtcg aaaaaaaacaaaaaatctggtaaaattcataaaaatacatcaaattaaTA TGGGTTTCCGGGTACATCCAGCTTTTACATTAAAAAGCGCTGGGTTAGTG CTGGGCCCGTCAGGGAAGGCAAGGCATTGAAAGGCCACATGCGCCAAAAA GAAGGGCATGTGAAATACAAAAATCTTATTGGTGGAAATTAAATAAATAG TCCGAAGGAACGCCACAAAGTAATCAGTAGAAACATGGATGTAATAGAAA TTAGATGGACAGTTAACTTTTTCTCTGTCATTAAAGTTGCattgaaattc ttttcaaatcgGCTTTCTTTATTATTGAATCATTGTCAGCAAGACAAACT CATTTCActggaatttttttatattttttNNNNNNNNNNNNNNNNNNNNN NNNNNNNNTACGtcattaaactaaaaatttgaataactcAAAAACTGTTT ATgatatcaatatgaaattttgacagaacaaatatatcgtaattctctag atttaaaaattttatcaaatctcctgaaaaataatgacgtcaacgttttt aagctattttcgatttttggctctaaaaaatgacgtcatcatgccAGAAT GCCAGAAtgtattgttgtaaagaaaaatagaaaagagatAAGTTTTAGCC TATCTGAGTGTTCCCTAATCTCTTCATCGTAATTAATTATCAAATTTGCA ACAAGACTCATTTTGGTACCGGGGggttcaatatttttataaatttccaG AATTTTTTACTAATTATAAGTTTCTGATAAAGATTTAGTTGACAGGGAAT GCAGGCAAATTTCAAGGCCTTTTCTGCTACTGGATAACGGTGGCAGAAAC TCAATCTTtgcttaaattttgaaattcaatcttaATTTTTGTACATGAGC CATGAGAATGAtgacaaaaatttgatgtccTAGGCCCTTATTAACAGAAA AAGCCCATTCTGAggttaattctttgtgttttattaATAGTTCCCAACTA AATTAAACAGAGCCTGGATTGattattttttccttcaaactgaattcaaa ctcaaaaaaatctgtaaatttGCCTGGGAATGGAAGGGAATTAAACCATA TCATCTGGTTtcttcaaacaaaatcttttatattttatatatcaTAGGTT GGCAACTGTTACGAGTCCATCATCGAAGGATTTCCGGAAACATTGATGGA TATATTGTCACAGCATTATTCAGTCATGAATCCTAACCTCCGAATGAGTA TGTGTAAATCTCTGATATTGATGCGAAACAAAAATCTCATCTCACCATTG AAATTAttggaattatttttcaaacttttaaaagctaaagataaactttt gcgaaagACACTTTATAATCATATTGTGACTGACATCAAAAATGTGAATC AGAAaagcaaaaataacaaaataaatactGTATTGCAAAATTATATGTTT TCAATGCTGAAAGATAGTAGTCCCATTGCTGCAAAGATTTCAATGGACAT TATGGTCGAGTTGTATCGTAAAAACATTTGGAATGATACGAAAACAGTTA ATGTCATTGTTACCGGTTGTTATTCCAAAATCACCAAAGTTATGGTGACt gcattgaaatttttcttgggAACGGATGCCCCTGAAGAGGTCAAAGCGGA TTCTGATTCTGAAAGTGAGGATGACaatgaaaaagccaaaaagCTGATCA TTGCTGGCCAAGTCAGCAAGAAAACAGGcaaaaagaaacgaaaaatggaa aaagcaTTATCGATGTTACGTAAAGCTAAAAAGAAACAGAAGCCAGttag tttcaatttttcagctaTACACCTTATCAATGACCCACAAGGTTTTGCTG AGAAGCTTTTCAAACAGTTGGAAAGCTCTACCGAACGATTTGAAGTCAAA CTGATGATGATCAACCTTATAGGACGGCTTGTTGGCATTCATGAGCTGAT CCTGTTGAATTTCTACCCgtttttacaaagatttttacaGCCTCATCAAA GAGAAGTTACCAAACTTCTGATGACTTCAGCACAAGCTACACATGATCTA GTTCCGCCTGATGCTATCGAACCAGTATTAAGGACCATTGCCAATAATTT TGTATCCGAAAAGAATTCTACTGAGGTAATTTTATTGCTTATTAGGCATG GGTAACTTATTGGCCCTTTTTGCGCATGCCCCTTTTTTAGGCTGGGCATT ATTACAgaaaagctcaatttttttcaattttcagccCGACCCTGATTTAA TTCCGATGCCTTACGTTGACCCTTATTTTACAAGGGACGAAAAAATGGCG CCAATGTAAGAGCTAGCGTGTAATGTATGCTGAGCTCTTAGATTTCTTCA TAACACTAGTTATGTGTTAAAAGAAATATGTCAGCTCAATCCAATAAATT CTCTTTGCGGTAAAAGAACATTGGTATGAAGAAATGCTTTACAATTGCAg taaattgaatttttgaaatgatttttctGTCAGTCTAACGGTGACTCTAA CTACGAGGGTCGAAATATCGCATTAGAATTGTTTTAAAGAGCAACCATAA AAACGTGTTTAAAAAtgattgtattgttgtaaaaaatgaagaagcttagt tgtttgataaaaaaaattcaacataatATCCACCCATTCATTTCTAGGTA ATGGCAGTTGGATTGAATGCAATCCGTGAAATATGTGCGCGTAACTCTCT GGCGATGTCAGCAGAATTGCTTCAGGATTTGGTAGAGTACAAAACCACTA AAAGCAAAACAGTAATGATGGCTGCTCGATCTCTCATACAACTATACAGG AATTTTGATTCAACTCTATTACGGAAGAAAGACAGAGGTTTGTTTTAGTA TTAGTATTTTATTTGTTATTATATATTTAATGAACAATGAAATTCCAAAA TCCGCAAAAATTACAGAGAGTTTCAAGTTAAAAAGTATCATTAGAATTTA ATGTTTCTATGTTTTTAGGCAAATGCCCGGGGGgcgggcactgaccttga cggccgactgggacgtgccgctggagctCGAGAATTTTACCCTGTCAGAT Aagaatttttggtaaaaaggtgaacctgtcagaacgaaaaataaattttt ttccaatttccacCCTaacaagtggcaaaaatgactaaagtagacaaaaa actgaaaaaatgccTAATTTTTACGCCTAAAAAAGGTACcttgaccagcg gcacgtcccgtACCAAGCTTTGCCTAAGTTGCCCTCCCGGGGGAAAACGT TTGAGCCTTTTCTGAGCTTTCTTCGAAAGTTATAGTTACCAAGGGCTATC GAAATGATGGGTCGGATATTGGACATTGTCCGAACTGAATAGCTCcttgt ccgacccaaaaataTCATAATCTGCAAGCAAAAACAACCCTGATCTGACC CACTAGCAATCctacccctctagaaactatacTAACATTCAACATTAATT ATTACTTGACATAGACGATCTAATTGTCGtaacattttttttctacagGA AAGCCTCAAGAGCCATCCATGATTGGGGAAGAAGTTGGGAGTAAACAATT TGGAGCGAAAACTGCCCTCACTTTTGTGCCAGGTGCTGATCTACTAGACA ACGAAACAGGTATTTATTATTAATTTACTTTCATTGGACTACATTAATGT TTCTTTTTGAATGTATTCcggtttatcgttctacatctctAATTTGAGCT TTCCTTAGCTCATTTGATgtcaatcgatacttcgattGAGAGAgaactct ctaccttcactcgtATATCATTTCCTTTTGAAGACTGTTTCCCATCCACT GATTTCTAACTATTTGACTAAATtggatttcaaatttaaaagaatATAAA AGGAAGCGTCACCAGTCCTTACTAGTCCGCCATCTAGTCTGTTGTCGATT CTGGTGATCAACAATGGCGCAATTAAGATGCTTTGAAttcttcaaaaatc gaagtCAAATTAGAAAAGAACCCGGTAAACTACATGATCGAATCCCGACT GGGCACCCTTCCCCGAGAAATCTGCAAGCAGTTAGTTCATCTAGTGTGTA CAGAGATAAATGATACCAGTGATTCCATTATTAGACATTTAATGTTTTAC TCTAAATAAAATTACGAAAAATTGAGACAAATGACAAATATTAATACGTA AAACAAACTGAAAAAAGTGGCGAATCTTATTGACAGAATATTAACTAAAA ATAGGCTGTAAAAAAGTAAGGTaaataactcaaaaaaaattgacaacctA ATCCTAGCTTCGGGAGACATAGGTGCCTGAGCAaagatttattgataaaa aaatgatgaaaaagaaaacctgCCAGGTGGTAAAGTGAATGAAAACTAcc caaaaataacaaaatcaaaaaattgtattGAATTCCAACAAGGAACAATC AAGCTCGTTGAAGAACCATGTCTCTGTTTATAGTgtgttccaggtcccac ctaaaaattcaggtcccacctaaccctaaaattcccaccctcaatccaga ctcccagatcccagctccAATATATCGCTGATGAACTTCCATGTGGTATT TTGTGCTCAGTTCGACGATGGATAATTATTTGGTCTCTATAAATTCACCA TTGATGGATGAAATGACGTTGACGTATATGCCAAGATCCCATGATTGTTT TGTGGAATTTCTAGAAACTAAAAATCGGAAATTCGATTTAAAGTCCCTAT TGATATCTAAAAacctatcaaaatttgaagttagaTGGATAgctatatca aaagttatgctaattttaagattttaggattttacacggttttagctgga tttcaTGGCATGTCTTCTCAAAAGAAGCCATAAAACAGTATTTAATAAAA AAGTGCCAGGGTGGTGGCAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaattgacaac ctAATCCTAGCTTCGGGAGACATAGGTGCCTGAGCAaagatttattgata aaaaaatgatgaaaaagaaaacctgCCAGGTGGTAAAGTGAATGAAAACT AcccaaaaataacaaaatcaaaaaattgtattGAATTCCAACAAGGAACA ATCAAGCTCGTTGAAGAACCATGTCTCTGTTTATAGTgtgttccaggtcc cacctaaaaattcaggtcccacctaaccctaaaattcccaccctcaatcc agactcccagatcccagctccAATATATCGCTGATGAACTTCCATGTGGT ATTTTGTGCTCAGTTCGACGATGGATAATTATTTGGTCTCTATAAATTCA CCATTGATGGATGAAATGACGTTGACGTATATGCCAAGATCCCATGATTG TTTTGTGGAATTTCTAGAAACTAAAAATCGGAAATTCGATTTAAAGTCCC TATTGATATCTAAAAacctatcaaaatttgaagttagaTGGATAgctata tcaaaagttatgctaattttaagattttaggattttacacggttttagct ggatttcaTGGCATGTCTTCTCAAAAGAAGCCATAAAACAGTATTTAATA AAAAAGTGCCCGGGTGGTGGcaaccccccccctgataaacgTCACATAAT TTGCGGGTATATAAAGAAACCGGACTCGTAAATGTTTGACGTTGATTGTC CTGTTCGTTGTATCACCGCAGAATTTTTTGGATCcccaaattttgttaaa aagctTATTATTATGCAAGAGAACCACAAGTGTCCTGCAATTTGCCAAAA ATAGTTCGcggtaaaattttattatttcgtCAGATGCCAAATTTATTCTT TCCTTTTCGCCAAGATTAGTTCCCTTGAAGAATTTTACCTTGTTTTCTGC TTTGCCAACAATAGTACCAAAAAACAGACAAGAGACAGAAAGAGACAAGC CAAGAACCTCATTCTCGTTGAGGATGTTACCTAAGACTTTGttaaactgt ttggaaaaaataaaaatcgttTATACACAGATAAGAAATCAGATCGTCTC GAAAAATTAAAATGCAAGAAGGTGCTTTCAACTCCTTATTGGACCAAaaa ttaggcaaatttgggccaaaaactcagaaaaaggtaattttttgtcaatt ttgttaTGTAAAAGTTGCTTAAATGCACGTTATAGGCCTGAAAACTGCCA TTCATTTCAAGGACGTGACGTCGCTTCTTTTTTGGAATTGTTTATATAAC ATatgtcaatttttttggcaGACCTCGTTTTATCGATTCTAATTAAATAT TGAAAGATATCTGTAACTGCAGGAGAGCCGGACGTGATACTTTACGGTTT CGGACGGTAATATATTTTGCTAAAATAGATAAAGGTACAGTTCTTAAGTA CAAATCAAACCTGAGAGGTGAATAATATGTCAATATAAGGCTCAATAAAT CAAGATACAATATAGAGCTACAATATAAAAGAACAACATTAAGATAAAGG AAATACTACTTACTAAACACGTTGGTCCCATAAGCTCTAATGCAGtgaga tatatatatatataaatattcTTTATTATTCTTCTGGGCGTCTCTTCAGA CTATAAGTTTTACAATTCTGGTTTTCTGTTTCGACATTGTAACTCTGTAT TCACTCTACAGTGATCTTTGTTCATCTGAACGCAAAAGTAGAAACAGAGC ACAGAAAAAGGCACACAAAGTCCCGTGGGACAGACGCTAGACAAAGAGAA ACACACGAAGGAGAGCAAGCCTAAGGGAATACGAGTCACATAATTACGTA ATAATTGACAAATAAATAGACAATACACCGACGATCAAATtaacataaaa atatacaaaacaacTGCTATTCGGCAGTTACAATATCTTTCATCACTTCT GTAGTGCactcttttaatttttgtgaagaaagatatcttttaatatttta cttggctctggttttcattgagcactctgcaacatcaatcacaaacaaTA CTTTATCGATTCTAATATACATTTTGATTGATTGTTCTCTTTTTTGCTGA ACTGAATCGACGTCTGGAAATTTCTTTCAGCTGATTTGGTAAACACGGCT GTCAATCTATTTACAGGGGTATTCATTTATTGAATCTTGCTGAATCTTTT GAAAAGGAGACTAATACAGTAGAATTAGTGCAAAAGATGAgattttcaaa aaccttttcCCAAAATTGAATAAGCGGGGGGGAGGGGAAATGTCctgagt ggaaaattttcgaaaaacaattttgtgagtatttttttcaattttccaaa aaatcagcTGTTTGGCCCgcaaagcctgaaaatgttcctaatttgttgat atttttgcaATCGAatccttatgctcttatataggctgttcttataaaaa aacgtgtatctgaaTTATCATTAGCTGTTTCTCCGTCCATCTGACTCGAT TGATATTTCAGAAACTTCAAAATGGGCTAATACATAGATACCATTATATC CATATAGGGGTTCGACGAAACttttcaaaccaaaaaaatattattgaagt TGTGCGAACATCCCctggaaaatttgcaaaataacccGGGAGAAAAGGGT TTTCTTTCCTTTGGAAAAATTATACTACTTACTGTAAAGTTTGAGTTGAA GAACTGAAGTTAATtatctactctcgggtacctaattatgttttgagatt tttttactCCTGGAAATTTTTATGATGAACAGTACTTTGCCGtataattt ctttggaaaaaaattacaattcacATACAAACTCATATCAAACTACCTGG AAAATGCTTAGACTTGGATTTTGTTATTCGgggaccccctggaaatgttc atccatgtatggatataaaatggaatgaccaATATTAATTACTGTAGAGA GTCTTGTGTCGTTCTACATATACACTTTTTTGTAAGAGCaataatgaggc tcaaaatcgccaaaaaaataagaataatttaagaacaatgctgagcctga atgACTCAATTTCAATGGTTTCGTTTTTTGCTGctttatgaaaaataata gGCACTTTCCGCAACCACAACGAGTACAACAACGAGAACgtgaaaacatc aaattcacaCCTTTGAGCTGTCAAAACTTGTCAAAACTCTGAGTAAACCC CAATTAACCGTTTTCTCTTCTCGTGCCCGACNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCAAAAAGtaag acaattttgaaaattatatttcagaatctttaaactttttatcttttttt agctttttttcttgtgctAGACGTGTAAGTTTAAagtattgaatttttga aatcctgattttaaatttgttcaGTTTGTTAATCTCGTTACTAATAACAT TACAAAATAATTCTGATCATTACAGTATTTTTAGTTTgcattgaaaatga aaagcatcgagattttctccaggtttttcgtttttcgttactttaaaaaa aatgatagaCGTTCTCgttgtgaaaaataattgcGGAATTAAAAATGAGC CACAACGGCaacttctctattttttcaCACCTATATGTTATTTCACAAGT TTTGCCGTTGTCGTTGCCGTTCTCGTTGTGACTGCGGAAAGTGCCTAATG CTCTGTGAagctgatttttttgtttttaatgacATATCGGAAGTTGATTT CTTCATCAACATGAAAAAAACACCTTCTCACCATTCTCCTTGAGGAAATT CTGTAGTCgtacacagcatttttaggtttaTAGTACCGtaattcaaacta gatttaacatttgaTACATACGTCTAaagcaaaaaatagcatttttgtga aagtagcgagccttacttggggtaatttgcaatttataatttataaggCT TgctactttcacaaaaatgctgTTTTTTGCTTTAGACGATGCTGGTGATA TACTaagcatattcttaattctGTGGCCGATTTCAtcttgaatattctta taagggatcctcgacaaaaaactttcgaattttttatcggcattgggccg ataagggggtgggggggtccaactacataccgataaaaaaacGAGTATTG GGACGAAAatcttttcagccaatttcttaatgatttcgtccacaaactcc actgaaagcatacaatttcacttgctttcaccttcGCGCACAAATTCGca actttaaaagtacagttttgaattagctttgataaaaaaactcttttttc attggccagcgTGCTGCCGTTTCCTTCGAAATGTTGCGACTTTATCGCGT CTTTTTATCTttcgttttgattaacaatatcaatgcgggtataaacaaac tcaatgttggtgcaaATAGACAAAAACTCAACGAAGACGGGTGGGAAGGC GAGATCAACGCAATGGCGGACatgattggaaaaaattgtgttttcgaaga tgtaaaagttggtttcaaaaaattttggccgataagagcaaggggggagg gggtctgaagcttatcggcccaatgccgataaaaaattcgaaagtttttt gtcgaagacccctaaagtattttctcataaaaaagtgtttaaaagaCGTT AAAAGTTCTAACTAGTTCCGTACCCTAGGTAAGCTTCTTACATCGTCTAC TTCTTATTCATTCTGTTTTCGTTTCTTTTCTCACAGAAACAAAGGAgaag acaaagaagaaaaagaaagaagtgAGCGAGGATGGAGAGAAAGACAAGGa ttctgaaaacgaaagtgaaagtggtaGCGAAGCAGAAGATGAGGACAATG AAGACTGGGAAACTGATGAAGAAGAAGGTGAGAGGGGTCGAACTTACTAA GGTTCATTACCGTGATAAGATGTAAAAAATACCGTAAGATGTGTGACCAT TATCAATTATCAATATGCGAATGGGTTATGGGAAATCATTTGTCGAAAAA TATGTGTTGAACAAATTATACAAATTTATGTGCATTTACAAAAACGTGCC CGGGAAAgtttaaaatttcgtttttgtcAGTTGATAAGAAACCGAGGTTT ACTTGTACTAAGCcagatattcagtcacaacttaccatcagattttacta agtgactgaatcaatctggcttagatttctaggctttATAAATGTGTGAT ATCAATCGTAAATATGAATGATTTCCcctttctcttttattttcattcgt TGTTTGTTCTAACAATGTTCTAACGATGTTTTTGCTTATTGATCGCAGAC ATTTTTATATCTATATAAAattgaaagagagaaaaaaatcaagagtgtaa gaaaaatgtaaaattgtgagaaaaaaaaattttgtggcCGGCAGGGTGAG TTTTTTTTCATCACCCGCGTTTCTGgaaacaagattttttttttttttgg cctaaGGGAATGGTCAAACTGACTAAAGTTTATTATGGTAAGATGCTACT CTCTGAAACGGCCTAAAACTACCGCGTGAGATGTGTGACCATTTTGATTT TGCCAGAATGAGGAatttattaagaaaaaggtGAGGTTTATATCTAACTT CAGATCATTTTCATGGGAATGCCGCTCTTTGAAAGTCATGAAGAATTTCA TAAACGACACTGTACTATTCATTGCGCTCCCTTTTGCGATCCAAATCCAG CTCTCTATGAAAATCGAATTACAGAGCGTTTGTTAAAAAAGGAAATAGAC GAACTAACTGAAATTTTATCATGATAAGATGCTGCTCTGTATTGAATTTT ATAGACCGTAgtatgaaggtagagcatccagctacggtgcgcaggGTTGT GGGTtggggtcataccaaagattcccaaaatggtacttcaTAACTCTCTG CTTTAATGCTCATCACCTACAGAGacgtggagaaatccagggaaatgATT AGCGCCCTCCCCTACTTCCGCGTAGATAGTTtgagaaaagggagccttcg agTTGCTCTCGACTGCGGTTGCAAACTTATTGTATGAATATCATTCCCCG CGATTTCTTTGTAGACGAAGATGTTGGAAGTGATGGTGAAGACAGTGACG GTTGGATAAACGTTTCACATTCTGAAGATGATatggaagaagaagatgaa gaagatgatgAAGATACACAACAAGAAAAAGGTTTGACTCTAGGGAAAAG CTCACTTTCAGAGGGAAAGAACAACAAGAAAAGAGTTTGACTCTGGTGAA AAGCTCACTTTCATGGAAAGATTACTCTAGAAAATATGGAAATGATTTAC ACTAGGGAAAGTATATCGCAACAACACAATAAGAAAAGGGTTTGACTCTT GGGAAAAGCTCACTTTCACGGAACGGCTACTCCAGAAGACACAACAGGAA AATATGTGACTCTAGGGAAAAGCTCACTTTGATAAATCAATATGTCAAAG GATTTACATTTAAATTTATTCCATAAGAAAAAGGTTTGACTCTTAGGAAA AGCTCACTTTCACGGCACGGCTACTCCAGAAGACACAACAGGAAAATATG TGACTCTAGGGAAAAGCTCACTTTCACGGCACGGCTACTCCAGAAGACAC AACAGGAAAATATGTGACTCTAGGGAAAAGCTCACTTTCACGGCACGGCT ACTCCAGAAGACACAACAGGAAAATATGTGACTCTAGGGAAAAGCTCACT TTCACGGCACGGCTACTCCAGAAGACACAACAGGAAAATATGTGACTCTA GGGAAAAGCTCACTTTCACGGCACGGCTACTCCAGAAGACACAACAGGAA AATATGTGACTCTAGGGAAAAGCTCACTTTCACGGCACGGCTACTCCAGA AGACACAACAGGAAAATATGTGACTCTAGGGAAAAGCTCACTTTGATAAA TCAATATGTCAAAGGATTTACATTTAAATTTATTCCATAAGAAAAAGGTT TGACTCTTAGGAAAAGCTCACTTTCAGGGAACGGCTACTCTAGAAgacac aacaaaaaaatatttgactctGGGGaaagggacaagctggagtttttaca agctcttatttgatttggttggttggtcgttaaccagtcataaaacaatt ttgttactttttctaaagaacgcgtcatctctatcacttcaaatgaccaa ttagtgaagtatctttaAACCTCCAGCTCATCCCTGGGGAAAAGCTCACT TTGATAAATCAATATTTCAAAGggtataataaaaaaatgataatcTTGTT GCTGCCCATTGATTTGTTGGCTGCTTCCCATTCATGTATGTCTttttcaa atggtaaaaaacgAACCCATGAGGCTCATTCTTTTAAGTAACCAAGTTGT TTGACGAACCAATACAGTGAGTAAGCTTGCTAACTCGCTTGCTAACTCGG TTTTCATTCAAATATGTATATACCTTATTGGGGGGAAAAAtttcggggga aagtgacgaaaattttgagggcgtgacgaaattttcccccgatgaatttt ttccccgatattttatcacccgaccaaaacttttacccgatttttttatc cccgaccaaaacttttacccaatttttaaaccccaaccaaaattaaaatc taaattttttacacctttattaaacgaaattagtgctttaaacgtcgaat tacaagatctttttNtttaaaccccaaccaaaattaaaatcaaaattttc acatttttattaaccgaaattagtgctttaaacgtcgaattaaaagatat tttttcgagctagtaaaggaaaccatttcatttggacaatttagttcgGT GAAAGttactaaattgtaaatttggtcggggaaaagtgacgaatttgaaa tttttattgggggaaagtgacgaaaatgcctctaggtgacgaaatttttc cccgacgaaaaaaaaaccctaCTAAATAAAACACCCTACTAAataaaact ctgacattttttccccgataaggtatgggcttttccagaaatagtccgtg ccctccctgttgaggatatcggatatccagggggttaacgatttttgttc aaaagtggatatccagggggttaaatatctacaagggagcggatatccag ggggtaaagtgtcttttcaagtaaacatacgatatccaggggtaagcatc tttataagagaggatatcaaGGGAGtagagcatatttttaagagtggata tccagggggtctttactattaaagtaggatatccagggggttcaatattt tgaaaaatcaatatcctcaacagtgggagtaatatttctttctggaaaag cccaatgcatGTATCTCAACTTTATCATAATCAATTCAGAGGATGCAAGA GCAAAAGCAGAACAAGTCAGCCAAACCAAATTTCTAACGGACGACGATTT CAAAAAGATACAGCAGAAAGCTATCTCACAGCAAATTGAAAGTGGGCCAA GTGCAGGTAAGcgaggcaaaaaacgtaaacaaacAACCGCCGCGTCTGGA CAAGAAAAAGAGAAGTCGGAACTGGTCGACTTGGCTAGCATAGAGAATGT TGTAAAGAAGATGAAACATGATAAGGAATCAAGACTGGCTACCGTACTCG CTGGTAGAGAAGGCCGCGAGAAGTTCAGTAAACCAAAACAGAAACGACAA AACGAGCACGCCAGTACCACCAATAAAGAGAAGATCAAATCGAAACCATT TATGATGATCAGTCACAGTCAAAGATCGCGTGGCAAAGGAAAGAAATCAT TCCGCGATAAACAAATCGCTTTAAGAGATTCAATGCTGAAGAAAGATGGG AAAACTAAGAGCGGAAAAAAAAGGAAGCACTAGTCTATATTTTGAATTGG TGTAAaacaatttttagatttttatatgCCTTTATAATGATCATTTTTAG ATATAAATCAATGACAAATTTATGCTCCTTTTCTAATGTTCTGCCTTTTT CACGTAGGACTTCAGGTCAGGATGTcgataaaaaaggaaaatagaATCTG ATATGGATAAGAAATTCTTAAATTGAATATCatgcttttttaagttttac gaGCACAGATTTCGATTAACTATTTTGCAGTTGAATAATGTAACGAAGAA CAAACTACTCCTTTACAAACTACTGATTTAAATGGTATATTCAATATTTA ATACCTTTTTCAAGTTATGGAGAATTTGGCGGATGTAAAGATGAATAAGT AAATTGTATTGGCCTTTTTCGCTAAAATTCCATACATGGATTACCTTCAT ATTCAAATCAAATGATAAATTCTAGTCTAATTTGaatattctatcaaaat taggCGATAATCAGCCACTTTATCCTAATTAGAATATATTATTTCCTGAT TAGTTCCTGATTGTTTAATATGTTCGAGcattcaaaaatttcaatatttt gtccCCATTATACCCTCTATATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014297XLOC_014297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025474-exon-sc0000536-1491911889:197541..197784TCONS_00025474-exon-sc0000536-1491911889:197541..197784Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1510915933:197541..197784TCONS_00025474-exon-sc0000536-1510915933:197541..197784Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1575043694:197541..197784TCONS_00025474-exon-sc0000536-1575043694:197541..197784Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1491911889:200988..201965TCONS_00025474-exon-sc0000536-1491911889:200988..201965Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1510915933:200988..201965TCONS_00025474-exon-sc0000536-1510915933:200988..201965Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1575043694:200988..201965TCONS_00025474-exon-sc0000536-1575043694:200988..201965Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1491911889:202488..202677TCONS_00025474-exon-sc0000536-1491911889:202488..202677Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1510915933:202488..202677TCONS_00025474-exon-sc0000536-1510915933:202488..202677Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1575043694:202488..202677TCONS_00025474-exon-sc0000536-1575043694:202488..202677Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1491911889:203339..203449TCONS_00025474-exon-sc0000536-1491911889:203339..203449Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1510915933:203339..203449TCONS_00025474-exon-sc0000536-1510915933:203339..203449Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1575043694:203339..203449TCONS_00025474-exon-sc0000536-1575043694:203339..203449Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1491911889:209777..209917TCONS_00025474-exon-sc0000536-1491911889:209777..209917Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1510915933:209777..209917TCONS_00025474-exon-sc0000536-1510915933:209777..209917Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1575043694:209777..209917TCONS_00025474-exon-sc0000536-1575043694:209777..209917Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1491911889:211105..211221TCONS_00025474-exon-sc0000536-1491911889:211105..211221Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1510915933:211105..211221TCONS_00025474-exon-sc0000536-1510915933:211105..211221Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1575043694:211105..211221TCONS_00025474-exon-sc0000536-1575043694:211105..211221Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1491911889:213380..214465TCONS_00025474-exon-sc0000536-1491911889:213380..214465Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1510915933:213380..214465TCONS_00025474-exon-sc0000536-1510915933:213380..214465Clytia hemisphaericaexon
TCONS_00025474-exon-sc0000536-1575043694:213380..214465TCONS_00025474-exon-sc0000536-1575043694:213380..214465Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000536supercontigsc0000536:197541..214465 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.0325 16.2937 11.3018 6.60655 3.3716 7.19983 7.67389 12.7326 13.91 10.9837 18.1079 18.5967 40.8673 34.2925 34.2685 31.5224 22.4588 23.4949 6.26612 10.561 15.4009 17.2867 27.5564 22.6695 0.362375 4.64196 7.26535 12.4066 16.6178 14.9939
Blast
BLAST of TCONS_00025474 vs. Swiss-Prot (Human)
Match: SDA1 (Protein SDA1 homolog OS=Homo sapiens GN=SDAD1 PE=1 SV=3)

HSP 1 Score: 506.523 bits (1303), Expect = 2.812e-166
Identity = 281/468 (60.04%), Postives = 371/468 (79.27%), Query Frame = 2
Query:  107 IKRDPESYREEFLQQWKHFQSNLEIFKLDPTREAEAVEDVMKFIAQVGNCYESIIEGFPETLMDILSQHYSVMNPNLRMSMCKSLILMRNKNLISPXXXXXXXXXXXXXXXXXXXXXXYNHIVTDIKNVNQKSKNNKINTVLQNYMFSMLKDSSPIAAKISMDIMVELYRKNIWNDTKTVNVIVTGCYSKITKVMVTALKFFLGTDAPXXXXXXXXXXXXXXXXXXXXLIIAGQVSXXXXXXXXXXXXALSMLRKAKKKQKPVSFNFSAIHLINDPQGFAEKLFKQLESSTERFEVKLMMINLIGRLVGIHELILLNFYPFLQRFLQPHQREVTKLLMTSAQATHDLVPPDAIEPVLRTIANNFVSEKNSTEVMAVGLNAIREICARNSLAMSAELLQDLVEYKTTKSKTVMMAARSLIQLYRNFDSTLLRKKDRGKPQEPSMIGEEVGSKQFGAKTALTFVPGADLL 1510
            IKRDP +Y EEFLQQ+ H++SN+EIFKL P + ++ + +++ F+AQ+ +CY   +  FP+ + D+LS +++V++P+LRM+ CK+LIL+RNKNLI+P  LLELFF+L +  DKLLRKTLY HIVTDIKN+N K KNNK+N VLQN+M++ML+DS+  AAK+S+D+M+ELYR+NIWND KTVNVI T C+SK+TK++V AL FFLG D  E+ K DSDSESEDD   A+ L++     KK+ K K+K+EKA+ +L+K KKK+KP  FNFSAIHLI+DPQ FAEKL KQLE   ERFEVK+M++NLI RLVGIHEL L NFYPFLQRFLQPHQREVTK+L+ +AQA+H LVPP+ I+ +L T+ANNFV++KNS EVM VG+NAI+EI AR  LAM+ ELLQDL +YKT K K VMM+AR+LI L+R  +  +L+KK RGKP E S+   E   +++G   A  ++PGA++L
Sbjct:   20 IKRDPPAYIEEFLQQYNHYKSNVEIFKLQPNKPSKELAELVMFMAQISHCYPEYLSNFPQEVKDLLSCNHTVLDPDLRMTFCKALILLRNKNLINPSSLLELFFELFRCHDKLLRKTLYTHIVTDIKNINAKHKNNKVNVVLQNFMYTMLRDSNATAAKMSLDVMIELYRRNIWNDAKTVNVITTACFSKVTKILVAALTFFLGKD--EDEKQDSDSESEDDGPTARDLLVQYATGKKSSKNKKKLEKAMKVLKKQKKKKKPEVFNFSAIHLIHDPQDFAEKLLKQLECCKERFEVKMMLMNLISRLVGIHELFLFNFYPFLQRFLQPHQREVTKILLFAAQASHHLVPPEIIQSLLMTVANNFVTDKNSGEVMTVGINAIKEITARCPLAMTEELLQDLAQYKTHKDKNVMMSARTLIHLFRTLNPQMLQKKFRGKPTEASI---EARVQEYGELDAKDYIPGAEVL 482          

HSP 2 Score: 105.531 bits (262), Expect = 3.816e-23
Identity = 72/176 (40.91%), Postives = 112/176 (63.64%), Query Frame = 2
Query: 1703 WINVSHSXXXXXXXXXXXXXXXXXXXXXARAKAEQVSQTKFLTDDDFXXXXXXXXXXXXESGPSAGKRGKKRKQTTAASGQEKEKSELVDLASIENVVKKMKHDKESRLATVLAGREGREKFSKPKQKRQNEHASTTNKEKIKSKPFMMISHSQRSRGKGKKSFRDKQIALRDSML 2230
            WI+V HS D+ ++E  +       E+  A+A A  +S ++ LT +DF+KI+   + +++++ P    + +KRK     S +E  + EL+ L  IE + KK K DKE+RLAT +AG+  R++F + K K  N  +S+TNKEK K K FMM+ +SQ  R K K+SFR+KQ+ALRD++L
Sbjct:  512 WIDVQHSSDEEQQEISKKLNSMPMEERKAKAAA--ISTSRVLTQEDFQKIRMAQMRKELDAAPG---KSQKRKYIEIDSDEEP-RGELLSLRDIERLHKKPKSDKETRLATAMAGKTDRKEFVRKKTK-TNPFSSSTNKEKKKQKNFMMMRYSQNVRSKNKRSFREKQLALRDALL 680          
The following BLAST results are available for this feature:
BLAST of TCONS_00025474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SDA12.812e-16660.04Protein SDA1 homolog OS=Homo sapiens GN=SDAD1 PE=1... [more]
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