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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025457 ID=TCONS_00025457|Name=TCONS_00025457|organism=Clytia hemisphaerica|type=transcript|length=1491bp
CAATTTATCAATTTAAAGTTCAGAAACCAATAATTTAAGATATTAATATC
CAATTGAGTAAtcaatcttttttgcttttataaaatgCTAGCATCAGcaa
ttatttcttaaaaatggTAGCCGAGTAGTGAATTGAGAAGTGGGAGAGGC
AAAACGACAGacaaacaatttattttagCTATTCATTACCATTGACCGTG
CTCACACTGAAGAATTCAGTTGAAAATGGAGCGTGAACAGCAAGATGATG
GCTCGCATCTTTTCAACTCTGACTGGATCGTCCAGCAAAAACGAACATTC
ACTGCTTGGTGTAATTCCCATCTCCGAAAAGTTGGACAACAAATCGAAAA
TATTGAAGACGATTTCAGAGATGGTTTAAAGCTGATACATCTTATTGAAG
TCATCTCTGgagaaaaattaacaaaaccAAAAAGTGGTCGTCGACTGAGA
GTGCATCACATCCTAGATATCAACAATGCTCTGacctttttgaaatcaaa
aggaGTTCATTTGACAATTTCAGCTGAAGATTTGGTTGatggaaaattga
atttgaCCCTTGGTTTGATCTGGATGTTGATTCATCGTTTTGCTattcaa
gaaattgattttgatgatggGACTGCAAAAGAAGGTTTGCTACGATGGTT
CAACGATGGAAATGAGATGCCTATCAACAATTTTGCGGAAGATTTCAAAG
ATGGAGTTGCTTTATGTTATCTTCTTAAGAAACATGGTTGCAAAGCAAAG
GTTTTGGAGGATTTGACCAACGCTGATCCTGTTCACAATTTGAACTCGGC
CTTTGAAGTAGCAGAGAATGAGTATGGTGTACCGGCCATGTTAGACGCCC
GCCATGTAGCGGAAGAACCGGATGAACTAGCTGTAATGACGTATCTCTCA
ACACTTTATCACGTTTTGAATGAACAGAAATCACCACAGACTGAAGGAGA
CTTTCAAAGCGAGGTTTATTTGATTCAGATTGCTGAAGATTGCCCTGAAA
AGTGTTTGCAATATCTCAAGAAATGTTTAGAAGATAATCGATTCATTGTT
TCTTTGCATGAGCTCGCAGACAAGGACCATGGACCAACTTATTTGAAAGT
ACAGGCCACCTTTCAAGACCTTTGTGTCGAGGCAGAGTCGCTGGAAATTT
TGAAGACTTTGGCCCAAAACAAAGAGATGACGGAGTTTTTGGCAGAAGAT
TTGAAGCTGTTTGAAGGTCACCGGGACCAAAAAAACTTCTTCACTCCCGC
AGAGCAGTTATTGTTGTTGGAGAGTAAACTTCATCAAGTCCCTTTCCAAA
aggtttgttcttttttttcatcccCTTGagttgatttgatttgatttgac
ctatttgtttttcagaaaaagtGGTACCTCAATGGTAGTACTACTCGAAG
TCGGTCAAGTTGGGATTCAacgaaatttcatatttcaaatctttttcacC
AACATCGAGTAGGGCTACCATAagtaccactttcaaaagaC Run BLAST on NCBI protein sequence of TCONS_00025457-protein >TCONS_00025457-protein ID=TCONS_00025457-protein|Name=TCONS_00025457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MEREQQDDGSHLFNSDWIVQQKRTFTAWCNSHLRKVGQQIENIEDDFRDG
LKLIHLIEVISGEKLTKPKSGRRLRVHHILDINNALTFLKSKGVHLTISA
EDLVDGKLNLTLGLIWMLIHRFAIQEIDFDDGTAKEGLLRWFNDGNEMPI
NNFAEDFKDGVALCYLLKKHGCKAKVLEDLTNADPVHNLNSAFEVAENEY
GVPAMLDARHVAEEPDELAVMTYLSTLYHVLNEQKSPQTEGDFQSEVYLI
QIAEDCPEKCLQYLKKCLEDNRFIVSLHELADKDHGPTYLKVQATFQDLC
VEAESLEILKTLAQNKEMTEFLAEDLKLFEGHRDQKNFFTPAEQLLLLES
KLHQVPFQKVCSFFSSP Run BLAST on NCBI transcript from alignment at sc0000536:72927..84672+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025457 ID=TCONS_00025457|Name=TCONS_00025457|organism=Clytia hemisphaerica|type=transcript|length=11746bp|location=Sequence derived from alignment at sc0000536:72927..84672+ (Clytia hemisphaerica)
CAATTTATCAATTTAAAGTTCAGAAACCAATAATTTAAGATATTAATATC
CAATTGAGTAAtcaatcttttttgcttttataaaatgCTAGCATCAGcaa
ttatttcttaaaaatggTAGCCGAGTAGTGAATTGAGAAGTGGGAGAGGC
AAAACGACAGacaaacaatttattttagCTATTCATTACCATTGACCGTG
CTCACACTGAAGAATTCAGTTGAAAGTAAGTTGATTTCTTCATACATttg
tttttgcttattttcaattttgatttttatttctattccagacccgatca
atcgaacttgtcgaaccaatcgaacaatcgaactactCAAACTCCattga
acgattaaagttcgattaaaaaaattaatcgaactctaagattttttaaa
agattgtgagtgttcgaataagttcgatcaatgggtttcggttcgatcag
ttccataaaccaattttgttcgacaagtttgtgctgctccgccaccgtat
attagcttcttttcaaagccaaattcggaatgtaaatcgggaaattactt
ccgataacggNNNNcgtagtattccgccactcggccgcgcgcgaaatcgc
aacagagggggctacggactttattccggatagacaaatatccgggtaca
ataaacgtcaagctgttaagtccgggaactgtcgaaatggcaatcgcgtg
cgccaggacaaagtttttgcaagcgagggaagacATATGAAGATTTAATA
TCATCggactaatcgaactttttactgaccgaactaatcgaactgctata
gacccctttcataatttttcagcttgttttgattttctcgctTAGTCTTC
TTTTCTGtatggtcttttttaacaaaatctggAATAAAAGAGACAGAATT
CGGAGGCAAAGTTGGAGGCATATTGCCTCTATCATCCaaatttgtaatat
attttattcaGGCTAAACAAGGTAATCCAAAACATATGACATCACATGAA
AGGGgtctattgcttcaaaaattgtgagtgttcgattaggttcgattaat
ttttttaatcgaactttaatcgttcgatggagttcgatggagttcgatta
gttcgattgttcgattggttcgacaagttcgattgatcgggtctggtcta
tttggttgagttgcaggaggctttcagttagtcacactactATAATATAA
TATAGCCGTTTCTTCATTAATCTCTGGTGGGGTATGATCTCTTCATCCAA
ACCAGACAGTTAATATTCATAACACGTTAGTGGTACCAAAGCTCTTGTAT
GGTTTAGAATTGATCAAGATCACCAGTCGTCACTGCGTCACCGAGATcta
ataatagacctttttttaaagaggcaggcATGTTGAATAGGccttttttt
caaagaggccaccctgcctgttgaataattatgtagtccagcagaaaaac
aatgataaaaccatgcataattatagaccttttttcaaagaggacgtcct
gttgaataattatgtagtccagcagaaaaacaatgataaaaccatgcata
attatagaccttttttcaaagaggacgtcctgttgaataattatgtagtc
cagccataaaaacaatgatagagccatgcatcataattactgtatcatgc
atattgtaatgattatgcatggttttatcattttttttctgctggactac
ataattattcaacagggtggcctctttgaaaaaaggtctattacactatg
catgatacagtaattatgcatggctctatcattgtttttatggctggact
acataattattcaacaggacgtcctctttgaaaaaaggtctatacttgCT
TTGAAGTCTCTCCTTGGTGTTTCTAAACACACTCTAAGAATCATATCCAG
CAGCTCTATAAGATACCCGATATCAGTGTTCATCTTTACAATTGTAAGCT
CAATCTTATCAACCAAATTGTTCTGAACGACAGCACCCGTGGATATGCTA
TGTCAATAATGCCACTTGCCAAGCGCGATCGCACGTTCATAGTTTCTACC
CCCCTACATTTAGGGGGGGTCTTGGGTTTTGATGAGCCAAAAGCAAGGGG
GTGTTAAAAGTATGACTTTCCTAAAGGGGGGTTGCCAGTTAAGGGGGGTC
TTCTTACCTAAGGGGGGGGGTCTTGACCCCTCTAGAAACTTCTTAGATAG
GGGGATCTTCCTTGAATTATGACTCTTGTACAATTGTTTCATTTATACTG
ATTTGGGGGTGTGTGAAATTTTAgatgaatttcctaagggggggttagca
cttaagggggggggtcctcttacctaagggggggtcttgacccctctaga
aactatgacGTTTTCAATAGTGGATGAAATTAATGATATATGTCTTgctc
aaaatataaattttgttgaCTGTATTCTGAATAGAAAGCGAAACCGTATT
GTCATATGCTTTCTGCCAGAGTGAGAGAGCATTTGGAACTGAAAGAATGC
ATTGAAAACTGGCACGAGCCAGACTGTAGGCTAAAATTCAGAACGATTTT
GGAATCTGCTATACCTAGATAGATTTTGTTTTAACCAAAAATTCTTCGTC
GATTTATTTGATAGGAATTTTTACACGGTTATCGTCATGCTTTTTCTTGT
GGATTTTCCTATTGTGATGTGAGGCTTTATTCACATATGTTTGAGTTATT
TAAGGCCTCAATTTTTGTTTGGTTACACAATTCCTATTTATCTCAATTAG
GTCGTGTCTTTTACTATTGTCGTGTTACAATGAAATTCTGAACCCACTGC
CAAATTAATCCTTGGATTCGTGCAGACGCCCGAGGTTACATAATCTCAGG
AAGCCATTAATCCCCTTCCCCatttccccatattcccatgaTTGAAGTca
atatcaaaatatatttgcTCCTCAGAAGGCTAATTTCCATTACCCCTTTT
GTTTGACCCCTTTTAACTACTTTCAAACTCCCTATTTAATTACCTTCCTG
TTAAGCCTTTCTTATGTGTTATTTTATGACTTTGTTATTTTGATATGATA
ATGCTAACGCCATTAACCCCAACCCATTATGTAATCAGGCAATTGACATT
TATTTTAGGAGTAGGACCAGGTAGGACCTAGTATATATAGAGgtcaaatt
ttgtttgtaaGTAGACAAGTAGACAAGTGAAGTTATTTCAACCTTCAtcg
atttattttcaaaatgtaagTGTAACATTGTTTTTTGTACCTTTAGGAGC
TGGTTatgttaaagattatttttataggGAACTAACTTTGTCTCAAAGTT
CATTCTGCACTCGTCTCCCTTTTGTTTTAATGAATACTCTATCTGATCAT
GAAATTTAGTAAGTTCAGATGGAGGGCTCGGAAATTCCATTACACCATGT
ACCCATTGAACCAAGTTTTGTTTTATATATAAATTCTCTGTGTTAGACTG
TTTCGACACTATCAACGTTTTCCTTCTTCAAACTTCTTTGAGTTTGAACT
TCTTAAAAGCTGAATCGATGTTTTTCAAATCATTTCGACCAATTTATCCA
AAACCCCTTTTCagactttctttgttttgataaaaattagaCTTTATAAA
GGTAAGACAGGTAGGGCCTTGACACTATCCTTAGCTCTACACGCCTACGC
ACACCAGAGATTTTCCATTAGGCCCGATTTTTAACTTTATTCTTGAACAG
CCTCATGGGGCCACATGGTGATCCTGGGGGCAAGATTGCTGGTATACCTC
CGGATAGGCCCCGTTGGTCAGCACAATCTCTCCTCCAGGACAACTAGTAA
CCACATGAGTGCATTTTTANNNNNNNNNNNNNNNNNNNTTTAACTACTTT
CAAACTCCCTATTTAATTACCTTCCTGTTAAGCCTTTCTTATGTGTTATT
TTATGACTTTGTTATTTTGATATGATAATGCTAACGCCATTAACCCCAAC
CCATTATGTAATCAGGCAATTGACATTTATTTTAGGAGTAGGACCAGGTA
GGACCTAGTATATATAGAggtcaaattttctttgtaagtAGACAAGTAGA
CAAGTGAAGTTATTTCAACCTTCAtcgatttattttcaaaatgtaagTGT
AACATTGTTTTTTGTACCTTTAGGAGCTGGTTatgttaaagattattttt
ataggGAACTAACTTTGTCTCAAAGTTCATTCTGCACTCGTCTCCCTTTT
GTTTTAATGAATACTCTATCTGATCATGAAATTTAGTAAGTTCAGATGGA
GGGCTCGGAAATTCCATTACACCATGTACCCATTGAACCAAGTTTTGTTT
TATATATAAATTCTCTGTGTTAGACTGTTTCGACACTATCAACGTTTTCC
TTCTTCAAACTTCTTTGAGTTTGAACTTCTTAAAAGCTGAATCGATGTTT
TTCAAATCATTTCGACCAATTTATCCAAAACCCCTTTTCagactttcttt
gttttgataaaaattagaCTTTATAAAGGTAAGACAGGTAGGGCCTTGAC
ACTATCCTTAGCTCTACACGCCTACGCACACCAGAGATTTTCCATTAGGC
CCGATTTTTAACTTTATTCTTGAACAGCCTCATGGGGCCACATGGTGATC
CTGGGGGCAAGATTGCTGGTATACCTCCGGATAGGCCCCGTTGATCAGCA
CAATCTCTCCTCCAGGACAACTAGTAACCACATGagtgcatttttacatt
ttaagaaaaacgaAAACTTGTAGATATATCTAGAggacaaatttttatta
tttataccACATTGTTTTGGTGATTAAagagattgaaataaaattaaaaa
aaataaaaaaaactagaGTCGTCCCGCAAAATTGCATGCGTATCAaacaa
agattaatgctgtgaAAGCGCTATATTGTTTACCTGACtctaaagcaaaa
aaatacgccacaaaacttctaaagggattcatgaaaaaataacccggcac
tttttaatgaaatcaacattctcaaaaactgagaaattgtctaaaatttg
agccatagataaaaagatttgagccaagccaaccttgagaactaatttga
agatcaacttcccaagaaaaagatctacagggaagacggaacccacctag
atctgcgcactgttggataggctatttcccggaccTCAagcactgaccca
tttacatatgcggaattgtttttactttagcgtataaacaaggccttaaa
aattgaagcgctgtctccagctgtctcgggaattgaatgacaaattttga
ttggttgattttggctgtttcaagttttaattaattgtcttacgaacttg
attcaggtaactctcatccttgttgttgcaaatacatcctgtagatgact
gatgttattttttctgcaagcttgatttcctagtgtgactgactggcttt
gaggcctatttttgcaactatagacgttttcaatgagcgccccgtcagca
ccttggactgactacccaattcccctcacatggcatgggttgacccgggc
aaaggttcattcacttgccaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaag
gttcattcacttgccaagtgaaccgctgcgagtgggaatcgaacctcagt
cgcctgtgcagcaaccaaggtcaatgaccactataccacagcgcctgtAT
ACACAGATCGGTCCTGTATATTTATAATCTgatttaccgtcaactgctct
aacttgggactatctgacaaaacatgggaggGCATGCAATTCGACCATCA
TTTCACTGAAccttcaaagtcatttgatttaagttaatgaacggcgtatt
aaaaaattgacgatttctcttttgcaccgagtaccgtgagtggtcctaaa
tccgacagccctgtgcctaaatccgatggggtctttcaaagatacaaact
aaaataaaaacaaacctttcgcagTGGTGCAACGAAGATACTAAAGTAGA
TACTAAACTGGGAGAATtaatacactgaaccaattgagccaaataacaat
aattgcttcttaatcttatacaaaacctaattttttattgcaatatgtac
aacatcataaatgaataaaaggtaatttgttagatgttttgtttggagag
ttcttgcaattgtttattgttcaacttggagatgGAATGTTTgcaaacat
agaatttttttcataacagttatttgggggatcaggattaggcagggctg
tcggatttaggaccactcacggtatatgaaaaaaaatccgtagtggaaaa
caccagaatgtctggaacgaagaagaccaaattattggcaaaacgatgga
gtgTTTGACGTCACTCACGCAGCAAgatacacactcgttatttgttaNtg
gcaaaacgatggagtgTTTGATGTCACTCACGCAGCAAgatacacactcg
ttatttgttaatcccatcgggttTAGGTGGCGGGGATTCTCTTATTCTCC
AATCTACAGCGttcggtcattttgaatgaaaacaaaaaagttaaaaaggg
gcgcgctatcagtgatagttattgtgacatgttatgacagaaagtatgat
tgataaacttggtggagttatcaaaacaaatttgttgtcggagagattta
acagtaagtgaaaatacaggccagatatcaacagtcccatgtttcaacca
atcgtcccaagttagagcagctGACGGTATTGAGGCAATTTCTTTgctta
aagtttgttttttctttgtgaattttcatcttcaatttttatcaagGGGA
TTATGTTATTAGCTGGCGTTTCGTGAGGCTAAGCTTTTAgggcaatgttt
ttggtttttctggaGCATATAAGATAGAGGAAGACCTACTGAAAAGGGGG
AAATTAAGGGGaacaattctatcaaaagttattggcaaAGAAAGTCACCT
TTTGATTGCTTTAccaaacaaaaagatattaaaaaatcttgacaggccat
tttgtcatttttgtgtcattttggTCAGCTGAATGGATTGACGCAATtgt
ttccattgttttgccTTTTGGAACATCTATATACAGGACAGGTTTGGTTT
CtgcttcaaaaagtttgcaataGGAAATTCAAATTTAGCGTTGTTTGCAC
TCACCTGGTTACTAGTCTGAGAATTCATCCAACAATATATAAGCtcataa
ttttataaaaacaaaatttaaggGGCCATTGACAAAAGATAATCCTTTTT
TTAACAGCCTCAGGCCGTTAAGAatctgaccccctccccccttccTCTTA
ACGGCcaaaaaattcttggaaaaaatataaaattacctttcccctacatg
tttttttgcattctttttttctttatttccacgggaaaacatgtggtttt
gagcNCATgtttttttgcattctttttttctttatttccacgggaaaatA
TGTGGTTTTGAGCCGTGATTTCACCCAAGGCAAGTCAGGGCAGGATAGGA
AAAGCGATTGTTGAGAGCGGGTGGATAGGAATTGCCTAATTGGGTCACGT
GacaaattatatttctttataTACGAATGAAAAGTATGGCAGAAGTGATG
GATTGTATGGTTTCTtagtattttttaagattttgggacaCTACAAGGAG
CTTCTATTGTATTGAGATTTTccttctttttggacctaccttaaggtagt
cctttaaattaacccttgtccgttcgtccgttcgtccgttcgttcgtctg
ttgccagcttttctcgggatcggctcattagttttttctaattttttgca
caatgatgtaaaatggcaatatccaaaatgtgacggagcccgattttcga
aaaaaaattttttccggtcgccaggtccggaaatgtcccggaaaaagcgg
ttttttgggattttctcgagattNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTtcgctaagcgcta
tattttcttaatgattgtttttctccttattgctatctaagtttcatcat
caggtaggtccattcagcatgttgcttgtttagcTATCGTTGACAGCATA
AAACCTTGACCCCCTCCCTCCTTACGGCCTGAAGCCgtttaaaaaaagga
ttgtCGATTGTTGACGGCCCCTAATTTACCTCaacacaaagttctaaaat
tatagagcttggtgcatgCAGGTAGATTTGACAGTGTGTGCACCCTGTTT
GACAGACATTCTGAACTTTGAGAAGAGTCAGtcacaaggaccatcagcag
acagcCAAATTTGCTTCCAAACCAAGATTgcgcaaagtttgaagccctct
acaggtggtgctagagattttcggggaaaattttggaaactcaatttgat
tttttctgattccttacgaaaagttcttgaaatccatgTAAATCAGCTAT
CTAATGTACTTGAAGAGAAAttaattggctttcaaaatctgctccccacc
aaAGTTTATGATTTTTAGAGGTCAATTTTCAGTTAGTAGTCTATCTTTGA
GAcactgtatcttcaaaactacttgagatagcaaggtgaaaatttcagga
TCTTATTTTTTCTTGTGTGGTAGATCATTAAGGTCCAAATATCAGTAAAA
TCTAAGAGGGAGAtgtatcacactttctttattctgaaaattaaaaaatg
gctCTGAATAGTtgattgattttgttttatCTATTATTGTTAAAGCATTG
TGCCTGCACTATTGTCTCACACTTGagacttttctatatttatcAAATTG
TGAAGAGTAGAGGAAAGTCACTTTGCCAAATGTATTGTCCTTTAAcatat
tgattgatttaaacagttttgttcatttttattaGATGGAGCGTGAACAG
CAAGATGATGGCTCGCATCTTTTCAACTCTGACTGGATCGTCCAGCAAAA
ACGAACATTCACTGCTTGGTGTAATTCCCATCTCCGAAAAGTTGGACAAC
AAATCGAAAATATTGAAGACGATTTCAGAGATGGTTTAAAGCTGATACAT
CTTATTGAAGTCATCTCTGgagaaaaattaacaaaaccAAAAAGTGGTCG
TCGACTGAGAGTGCATCACATCCTAGATATCAACAATGCTCTGacctttt
tgaaatcaaaaggaGTTCATTTGACAATTTCAGCTGAAGATTTGGTTGat
ggaaaattgaatttgaCCCTTGGTTTGATCTGGATGTTGATTCATCGTTT
TGCTattcaagaaattgattttgatgatggGACTGCAAAAGAAGGTTTGC
TACGATGGTTCAACGATGGAAATGAGATGCCTATCAACAATTTTGCGGAA
GATTTCAAAGATGGAGTTGCTTTATGTTATCTTCTTAAGAAACATGGTTG
CAAAGCAAAGGTTTTGGAGGATTTGACCAACGCTGATCCTGTTCACAATT
TGAACTCGGCCTTTGAAGTAGCAGAGAATGAGTATGGTGTACCGGCCATG
TTAGACGCCCGCCATGTAGCGGAAGAACCGGATGAACTAGCTGTAATGAC
GTATCTCTCAACACTTTATCACGTTTTGAATGAACAGAAATCACCACAGA
CTGAAGGAGACTTTCAAAGCGAGGTTTATTTGATTCAGATTGCTGAAGAT
TGCCCTGAAAAGTGTTTGCAATATCTCAAGAAATGTTTAGAAGATAATCG
ATTCATTGTTTCTTTGCATGAGCTCGCAGACAAGGACCATGGACCAACTT
ATTTGAAAGTACAGGCCACCTTTCAAGACCTTTGTGTCGAGGTAAGTGTT
ACTTTAGAAAGATAGTGAATAATAATTCtctctttgcttgtttttttctt
aCTATCTTCAAGTACAGTTAAGTTTCTTTAAGTTTATCAATGACACATCA
TTGTTTGgttgatttcattgaatttttaacttttcttttGCTGCATTTTC
TGATGAATGAAAGGCCTTGAGACACATGCTATGTTGATTAAAGGCTTTCT
AACCAGTGTTCTTCTATGTTGTTTTTAGGCAGAGTCGCTGGAAATTTTGA
AGACTTTGGCCCAAAACAAAGAGGTACTATTTTTTAGCACAGATTTATTA
CAAAGAAGTTTGATCTTGAGACCTGGTCCATTCTCGCGTTACCGCTTCCT
CTGCTATCATTCCTGTTGTTAGGTTTCCTAGGGCCTTTGCACGATAAAAA
ACTTTGTCCATGATATATAAAGATTAATGGGTTCTATTATTTAGCTGTTC
ataaaaatgatgtttttttgGATAACCTTCTTGACAGACAGAGGGTGTTA
CTAAATGATGATCATACTGGATCATATAAAATTATAATACAACCTTCCAA
CAACAACTGCCTTATGCTAGATCTTTATATATTTGCTTTTAGATCCTTCA
CTTAGAGAAATATGTAGTTTCTTGTAATTATAATATCGGGCCATTCCGAG
AAATTATTAACCATTATTGGAGTCTATACCCGATTGACCGCCTCTACGGG
GCTATCAAATGGTGCTTAGGTGGCGGCTCTCCTAGATCCCTACTGGTGGT
ATCCAGTCAGAAATGAGCTTCAGGTAACGTACCCACTTCCTCTAGAATGG
CCGTATCatgtttttttctctctcaTCGCAGATGACGGAGTTTTTGGCAG
AAGATTTGAAGCTGTTTGAAGGTCACCGGGACCAAAAAAACTTCTTCACT
CCCGCAGAGCAGTTATTGTTGTTGGAGAGTAAACTTCATCAAGTCCCTTT
CCAAAaggtttgttcttttttttcatcccCTTGagttgatttgatttgat
ttgacctatttgtttttcagaaaaagtGGTACCTCAATGGTAGTACTACT
CGAAGTCGGTCAAGTTGGGATTCAacgaaatttcatatttcaaatctttt
tcacCAACATCGAGTAGGGCTACCATAagtaccactttcaaaagaC Coding sequence (CDS) from alignment at sc0000536:72927..84672+ >TCONS_00025457 ID=TCONS_00025457|Name=TCONS_00025457|organism=Clytia hemisphaerica|type=CDS|length=3312bp|location=Sequence derived from alignment at sc0000536:72927..84672+ (Clytia hemisphaerica)
ATGGAGCGTGAACAGCAAGATGATGGCTCGCATCTTTTCAACTCTGACTG
GATCGTCCAGCAAAAACGAACATTCACTGCTTGGTGTAATTCCCATCTCC
GAAAAGTTGGACAACAAATCGAAAATATTGAAGACGATTTCAGAGATGGT
TTAAAGCTGATACATCTTATTGAAGTCATCTCTGgagaaaaattaacaaa
accAAAAAGTGGTCGTCGACTGAGAGTGCATCACATCCTAGATATCAACA
ATGCTCTGacctttttgaaatcaaaaggaGTTCATTTGACAATTTCAGCT
GAAGATTTGGTTGatggaaaattgaatttgaCCCTTGGTTTGATCTGGAT
GTTGATTCATCGTTTTGCTattcaagaaattgattttgatgatggGACTG
CAAAAGAAGGTTTGCTACGATGGTTCAACGATGGAAATGAGATGCCTATC
AACAATTTTGCGGAAGATTTCAAAGATGGAGTTGCTTTATGTTATCTTCT
TAAGAAACATGGTTGCAAAGCAAAGGTTTTGGAGGATTTGACCAACGCTG
ATCCTGTTCACAATTTGAACTCGGCCTTTGAAGTAGCAGAGAATGAGTAT
GGTGTACCGGCCATGTTAGACGCCCGCCATGTAGCGGAAGAACCGGATGA
ACTAGCTGTAATGACGTATCTCTCAACACTTTATCACGTTTTGAATGAAC
AGAAATCACCACAGACTGAAGGAGACTTTCAAAGCGAGGTTTATTTGATT
CAGATTGCTGAAGATTGCCCTGAAAAGTGTTTGCAATATCTCAAGAAATG
TTTAGAAGATAATCGATTCATTGTTTCTTTGCATGAGCTCGCAGACAAGG
ACCATGGACCAACTTATTTGAAAGTACAGGCCACCTTTCAAGACCTTTGT
GTCGAGGCAGAGTCGCTGGAAATTTTGAAGACTTTGGCCCAAAACAAAGA
GATGACGGAGTTTTTGGCAGAAGATTTGAAGCTGTTTGAAGGTCACCGGG
ACCAAAAAAACTTCTTCACTCCCGCAGAGCAGTTATTGTTGTTGGAGAGT
AAACTTCATCAAGTCCCTTTCCAAAaggtttgttcttttttttcatcccC
TTGaATGGAGCGTGAACAGCAAGATGATGGCTCGCATCTTTTCAACTCTG
ACTGGATCGTCCAGCAAAAACGAACATTCACTGCTTGGTGTAATTCCCAT
CTCCGAAAAGTTGGACAACAAATCGAAAATATTGAAGACGATTTCAGAGA
TGGTTTAAAGCTGATACATCTTATTGAAGTCATCTCTGgagaaaaattaa
caaaaccAAAAAGTGGTCGTCGACTGAGAGTGCATCACATCCTAGATATC
AACAATGCTCTGacctttttgaaatcaaaaggaGTTCATTTGACAATTTC
AGCTGAAGATTTGGTTGatggaaaattgaatttgaCCCTTGGTTTGATCT
GGATGTTGATTCATCGTTTTGCTattcaagaaattgattttgatgatggG
ACTGCAAAAGAAGGTTTGCTACGATGGTTCAACGATGGAAATGAGATGCC
TATCAACAATTTTGCGGAAGATTTCAAAGATGGAGTTGCTTTATGTTATC
TTCTTAAGAAACATGGTTGCAAAGCAAAGGTTTTGGAGGATTTGACCAAC
GCTGATCCTGTTCACAATTTGAACTCGGCCTTTGAAGTAGCAGAGAATGA
GTATGGTGTACCGGCCATGTTAGACGCCCGCCATGTAGCGGAAGAACCGG
ATGAACTAGCTGTAATGACGTATCTCTCAACACTTTATCACGTTTTGAAT
GAACAGAAATCACCACAGACTGAAGGAGACTTTCAAAGCGAGGTTTATTT
GATTCAGATTGCTGAAGATTGCCCTGAAAAGTGTTTGCAATATCTCAAGA
AATGTTTAGAAGATAATCGATTCATTGTTTCTTTGCATGAGCTCGCAGAC
AAGGACCATGGACCAACTTATTTGAAAGTACAGGCCACCTTTCAAGACCT
TTGTGTCGAGGCAGAGTCGCTGGAAATTTTGAAGACTTTGGCCCAAAACA
AAGAGATGACGGAGTTTTTGGCAGAAGATTTGAAGCTGTTTGAAGGTCAC
CGGGACCAAAAAAACTTCTTCACTCCCGCAGAGCAGTTATTGTTGTTGGA
GAGTAAACTTCATCAAGTCCCTTTCCAAAaggtttgttcttttttttcat
cccCTTGaATGGAGCGTGAACAGCAAGATGATGGCTCGCATCTTTTCAAC
TCTGACTGGATCGTCCAGCAAAAACGAACATTCACTGCTTGGTGTAATTC
CCATCTCCGAAAAGTTGGACAACAAATCGAAAATATTGAAGACGATTTCA
GAGATGGTTTAAAGCTGATACATCTTATTGAAGTCATCTCTGgagaaaaa
ttaacaaaaccAAAAAGTGGTCGTCGACTGAGAGTGCATCACATCCTAGA
TATCAACAATGCTCTGacctttttgaaatcaaaaggaGTTCATTTGACAA
TTTCAGCTGAAGATTTGGTTGatggaaaattgaatttgaCCCTTGGTTTG
ATCTGGATGTTGATTCATCGTTTTGCTattcaagaaattgattttgatga
tggGACTGCAAAAGAAGGTTTGCTACGATGGTTCAACGATGGAAATGAGA
TGCCTATCAACAATTTTGCGGAAGATTTCAAAGATGGAGTTGCTTTATGT
TATCTTCTTAAGAAACATGGTTGCAAAGCAAAGGTTTTGGAGGATTTGAC
CAACGCTGATCCTGTTCACAATTTGAACTCGGCCTTTGAAGTAGCAGAGA
ATGAGTATGGTGTACCGGCCATGTTAGACGCCCGCCATGTAGCGGAAGAA
CCGGATGAACTAGCTGTAATGACGTATCTCTCAACACTTTATCACGTTTT
GAATGAACAGAAATCACCACAGACTGAAGGAGACTTTCAAAGCGAGGTTT
ATTTGATTCAGATTGCTGAAGATTGCCCTGAAAAGTGTTTGCAATATCTC
AAGAAATGTTTAGAAGATAATCGATTCATTGTTTCTTTGCATGAGCTCGC
AGACAAGGACCATGGACCAACTTATTTGAAAGTACAGGCCACCTTTCAAG
ACCTTTGTGTCGAGGCAGAGTCGCTGGAAATTTTGAAGACTTTGGCCCAA
AACAAAGAGATGACGGAGTTTTTGGCAGAAGATTTGAAGCTGTTTGAAGG
TCACCGGGACCAAAAAAACTTCTTCACTCCCGCAGAGCAGTTATTGTTGT
TGGAGAGTAAACTTCATCAAGTCCCTTTCCAAAaggtttgttcttttttt
tcatcccCTTGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025457-exon-sc0000536-1491911889:72927..73151 | TCONS_00025457-exon-sc0000536-1491911889:72927..73151 | Clytia hemisphaerica | exon |
| TCONS_00025457-exon-sc0000536-1510915933:72927..73151 | TCONS_00025457-exon-sc0000536-1510915933:72927..73151 | Clytia hemisphaerica | exon |
| TCONS_00025457-exon-sc0000536-1575043694:72927..73151 | TCONS_00025457-exon-sc0000536-1575043694:72927..73151 | Clytia hemisphaerica | exon |
| TCONS_00025457-exon-sc0000536-1491911889:82612..83517 | TCONS_00025457-exon-sc0000536-1491911889:82612..83517 | Clytia hemisphaerica | exon |
| TCONS_00025457-exon-sc0000536-1510915933:82612..83517 | TCONS_00025457-exon-sc0000536-1510915933:82612..83517 | Clytia hemisphaerica | exon |
| TCONS_00025457-exon-sc0000536-1575043694:82612..83517 | TCONS_00025457-exon-sc0000536-1575043694:82612..83517 | Clytia hemisphaerica | exon |
| TCONS_00025457-exon-sc0000536-1491911889:83755..83799 | TCONS_00025457-exon-sc0000536-1491911889:83755..83799 | Clytia hemisphaerica | exon |
| TCONS_00025457-exon-sc0000536-1510915933:83755..83799 | TCONS_00025457-exon-sc0000536-1510915933:83755..83799 | Clytia hemisphaerica | exon |
| TCONS_00025457-exon-sc0000536-1575043694:83755..83799 | TCONS_00025457-exon-sc0000536-1575043694:83755..83799 | Clytia hemisphaerica | exon |
| TCONS_00025457-exon-sc0000536-1491911889:84358..84672 | TCONS_00025457-exon-sc0000536-1491911889:84358..84672 | Clytia hemisphaerica | exon |
| TCONS_00025457-exon-sc0000536-1510915933:84358..84672 | TCONS_00025457-exon-sc0000536-1510915933:84358..84672 | Clytia hemisphaerica | exon |
| TCONS_00025457-exon-sc0000536-1575043694:84358..84672 | TCONS_00025457-exon-sc0000536-1575043694:84358..84672 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000536 | supercontig | sc0000536:72927..84672 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00025457 vs. Swiss-Prot (Human)
Match: ACTN1 (Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2) HSP 1 Score: 230.72 bits (587), Expect = 4.655e-66 Identity = 131/313 (41.85%), Postives = 183/313 (58.47%), Query Frame = 1
Query: 226 MEREQQDDGSHLFNSDWIVQQKRTFTAWCNSHLRKVGQQIENIEDDFRDGLKLIHLIEVISGEKLTKPKSGRRLRVHHILDINNALTFLKSKGVHL-TISAEDLVDGKLNLTLGLIWMLIHRFAIQEIDFDDGTAKEGLLRWFNDGN----EMPINNFAEDFKDGVALCYLLKKHGCKAKVLEDLTNADPVHNLNSAFEVAENEYGVPAMLDARHV--AEEPDELAVMTYLSTLYHVLNEQKSPQTEGDFQSEVYLI-----QIAED----------------------CPEKCLQYLKKCLEDNRFIVSLHE 1062
M+ E+ D L + W QQ++TFTAWCNSHLRK G QIENIE+DFRDGLKL+ L+EVISGE+L KP+ G ++RVH I ++N AL F+ SKGV L +I AE++VDG + +TLG+IW +I RFAIQ+I ++ +AKEGLL W + I NF +KDG+ C L+ +H + L DP+ NLN+AF+VAE +P MLDA + PDE A+MTY+S+ YH + + +T + +V + Q+ ED PE + +++ LED R LH+
Sbjct: 13 MQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERG-KMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRVPENTMHAMQQKLEDFRDYRRLHK 324
The following BLAST results are available for this feature:
|
