TCONS_00025415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025415
Unique NameTCONS_00025415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025415 ID=TCONS_00025415|Name=TCONS_00025415|organism=Clytia hemisphaerica|type=transcript|length=2838bp
GCTTGTTTGAAACACAGGTCATATGTTGACAAGTTACATGTTGATACTGA
TAGGTCAcatatcattttcaaaatgcaaaagaaatgaaaattcatGATGT
CTAAAAGGTGCGCTGAGCATCAAAATATTCACTTCAAAGATTTGATTTAT
GTTTAATTGATGATCAAAAAAACAAATACCCTTGATTTTTGATGCTGAAA
AAGTAAGAAATATTTATTTCCAAGACTTAAAATTGAAACTTGTTTTCTTA
AAGATGAAATTTGTTTATAAATAGTCcagtttttaaaataaaatgctGCA
ACAAAATGGTTATGATTTTAAATTATTGGAGCCAAACCGTCGAGAAGGAT
TAGAATGTTCAATTTGTATGTTGTTATTGAAAGGTGCTTTTGAACTGCCA
TGTTATCACACATTTTGTAAAGGATGTCTGGAAAAGTGGAAGACAACACA
AAAACTTGACAAAAAGCCAGTAACTTGTCCATTATGTAACGCTATCCAAA
ATAGCACTAATCTGGGACATGCAATTGGAACAGTTGACCGCTTGATCAAA
ACAACACTCGATGTACATTGCAAACAACAGAAAGATGGCTGTGAATGGGT
TGGGAAAATATGTGATTATTTTGAGCAACATACTCGGTGGTGTCAATTCA
TCAAAGTCAATTGCAGAAAATCAGTTCTTTGTGACAAAATGCTTTTAAGG
AAGGATATGTTGGAGCATGAGAAAAGTTGTGGATATCAACATTTGAATTG
TCAATGGTGTGATGAGTTTCATCAGAAAAACCAACTTgagGATCATTACA
ATGCTTGTAGAGGATTTCCGGTGAAATGTTCAAATGAAGATTGCCAAAAG
ACATTTCCAAGAAAAGATTTTAAATATCTTATAGAAGATCACCTTGCAAC
TGAATGTGACTTCCAAGAGGTAGAATGTCAATTCTTTTCCAATGGATGCC
CTGATAAGTTCCCTCGGAACCAGCAATCTGAACACAACCAAGATCAAATG
CCATTCCATTTGTCGTTGGTAATAAAGGAATTGAGAGAAACAAAGAAACA
GCTAGTTGAAACCcaagagaaagaaaaatcactAGAACAAATTATACGGA
ATCAAAGGGAACAGCTTGGTGAATCTGTTATTGACTCTCCGCAACCAGAG
ATTTCAATAGACAGTAGATCTTTCGTTGGAACAAGTGTAAACAATGAACC
TACAGAATCTTCAAATAATATAGAAGATACAATTTTTCAGCTGCAAAAAT
CCATCAAGGCCTTGATAGAGGAGCCTCATGTTAATTCTGCATCAAATGAA
AATTGTGATCAGCCTACTGTCAGCAGCACCTGTTATTCAACTATAAGACG
TCCTTATTTCCATGCACGAAGGCGTTGCACACCTGCCGTTGCTGCTAACA
TCCCTGGTGAAAGTGAAGGGAATCTTTTGAACCATCCTTCTAGTACTAGT
TCAGATTCAAGCCTTGATTTGGATCAAATTGCATTCCAAACAATCAAATA
CAATGACCACAAGAAAGTtggtcaaaataaaacataCTTGAAATTGAATA
TGAGAACTGAAAGAATAAATCTTGATTTTCGAGTTGAATTTCCAAAGACA
TTTGAGCACATACCAGAACGTTTGAGGAGCCGCTGTAGATTACACAATGA
ATCATTTGCTTTCTCTACTGGTATCAAATTCAGTGTTTTGTATATCTTGA
TGCCATTCGGTGAATACAAACAAGACCAATTTTCTTTTGTCCAGAGTGTG
GAGTTTGTTGGTAAAAGGGGTCATCTTATTTTAGATAAATCATCCGacta
tttcaagaattttcgcACCTTGAATATGAGGCTGAACCATTTTTTTGAGA
GGGATGAAGATGATAATTTTATACTATGTATGCTTGTAAAATATTAGAAC
TTGTTTTGATTGAGGTTCAGTTTTGATTCAatcatttcactttttttata
gaACAGCTTTAAATTTAAAGCTTTTCAATCGATTCTGGTAAGCCCGTGTA
TaatggctgaaatttttatatttGTCTTAATTTTCTTTTGGGATTAAACA
TGCATACCATATAAACACACTATGGCTCAAACATGGTGGAAAAAGGTACA
ATACTGGTCTTGCTTCCAtctcaaaaacataaaaacaacgTCCTGAATAT
GATGTTCGATGAACGTTGAACCAACTTTGTGACTTCTAGGTTTCTTAGAT
TATTCCAAATCTAGATTTAGAATGCCATGCTTTTAGAGCctatttttaat
ttaatataaTTACTAGTGGCAAGAATAGTGAAATATAAGATATTTCTATC
AAATTTATCATTCATTCGCAATCTAATACCCTCTGATGGTCCtgattgat
tttttattgaatcATTTAGGTTTAGATACAATGAAATTTGatattgaaat
tgttttgaacttcaaaatttagatttttgacaTTCAATAGACGAAGGTAT
CTCTGTAGGCCATCTAAAGGAAGATTATTAAATCCATGTTAACatatatt
ttcgttatttttttcatttactgtTTGATAGAAATAAagtatttaaaata
tttataataaccaaaaaaattttgaaattttcaaatccatgttaatatta
tattttcattaattttttcatatactttttgatagaaaaaaaagtatttt
aaatatttatgatgaccaaaaaatattttgaacagaTGGATAGGCTGGGC
CTGTCATTCATTTTGTAATATATTtgtgtaataaaatttaaattcCGATA
TTAATAAATTTGTGTGTCAATTCCACAGTACCCAAGGTGTTTTAAACCAG
GCTATCTTATTTCTCGAATTTTTTATGAaccgaactaa
Run BLAST on NCBI

transcript from alignment at sc0000535:51906..57535+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025415 ID=TCONS_00025415|Name=TCONS_00025415|organism=Clytia hemisphaerica|type=transcript|length=5630bp|location=Sequence derived from alignment at sc0000535:51906..57535+ (Clytia hemisphaerica)
GCTTGTTTGAAACACAGGTCATATGTTGACAAGTTACATGTTGATACTGA
TAGGTCAcatatcattttcaaaatgcaaaagaaatgaaaattcatGATGT
CTAAAAGGTGCGCTGAGCATCAAAATATTCACTTCAAAGATTTGATTTAT
GTTTAATTGATGATCAAAAAAACAAATACCCTTGATTTTTGATGCTGAAA
AAGTAAGAAATATTTATTTCCAAGACTTAAAATTGAAACTTGTTTTCTTA
AAGATGAAATTTGTTTATAAATAGTCcagtttttaaaataaaatgctGCA
ACAAAATGGTTATGATTTTAAATTATTGGAGCCAAACCGTCGAGAAGGAT
TAGAATGTTCAATTTGTATGTTGTTATTGAAAGGTGCTTTTGAACTGCCA
TGTTATCACACATTTTGTAAAGGATGTCTGGAAAAGTGGAAGACAACACA
AAAACTTGAGTAAGTTTTATCCAATTTTAATCCAATGTTGTTTTTAAATA
CTTCCATTTCTGTTTGAGATAACTTTAAATTATCCTTTTTCAATCTGCCC
ACCATCATCTGGGTAATGGCTTTTTCAATGATTATGGAATCTAGATTCAC
AATCGCATAATAAACAACTCAGAACTCGTTAGTcttttcattagtttttc
tttaTATATACAGTCTTTCTGTCATGCAAATAAAGCTAAcaacccggggg
gggcactcgattttgaaaacgacagCAGTACTTTcagccaaaaatcaggt
ctctaaaatcagACCCTTATAGTGcgatttttcgaaatttttttcccttt
tcaGGGCAAATTTGGTtatttcccacttgctcacaaatcaacccttatag
tgcactttctaaagtccaaaaaacctacccttaaggtcCGCATGTctggt
aggtcacttacctggagtgcccccccccgctAACAATCATCTCTAACAGA
ATAGGGAAAAGACTACACATGTAATAGCAGTTAATACATCAAGGGCTTGC
CTTGTACTATCCATGCTTTTAGATCACGAGGTATATACCATCTCTGTGTT
GCAGTACGGTTCGAATgcaattttgatatttcatgacCAGAAATTCTAAA
TTACTCTCATTTTTACTTTACAGCAAAAAGCCAGTAACTTGTCCATTATG
TAACGCTATCCAAAATAGCACTAATCTGGTATGTAtttttcaatccaata
taaaATCTATTTTCCTGGCTGTTTTATTTTACAAACCTTTATTCTCTACA
ATTTACAGGGTTTTTTACGAAGTCATTTTTTTGGCATTTAAACTTatatt
ttattacaaagtgcgtcagcTTTTGGTATTACAAAGAGTATGAAATAAGA
TTTGGATTCACATGAATTACTACCccttaaattcaaaatgacCTTTTCTT
TTGTGCCCTCAAACATGTATCCCCgcttattttcagaaaatttcaaaaat
ttggccCTTATAATTTGGCCCTTATAATTTGGCCCAAAATTCAAGTaccc
ccttattttaaggggggagCTGAAACCATGGTTGAGATATGTTAATAATC
TGTTGATTCTTCTTGATACATTGTTATTAAGTGAGATGGCTATGACATGC
TTTACAATAATCTTATTTGAAGGGACATGCAATTGGAACAGTTGACCGCT
TGATCAAAACAACACTCGATGTACATTGCAAACAACAGAAAGATGGCTGT
GAATGGGTTGGGAAAATATGTGATTATTTTGAGGTAAGTCATTTGTTTTA
TAAGTTCCATTTTTGTCTGttacaatgtttacattttttcaaaatatccg
agaaaatgggcttttccagaaattattttttatcccactgttgaggatat
tgatttttcgaagtattggatatcctctcttataaagatgcttacccctt
gATATCGCATTTTTTACTTGAATAGATACTTTACCTCCTGggtatccgct
cccttgtagatatttaacccctggatattcacttttgaacaaaaatcgat
ATCCTCATCAGGGGGCGCGGACAATTTCTGTAAAAGCccaatttgaagaa
tttttctttcaacgATCTTAAGGATTTAAAGTCTATAAAAGAAAGTTACC
ATAATAACAAagtaattttttgataaaattagatttgagctctttcttat
aaactgggaaagtgattttgaaaattcttttcatcTTCCATCAAGCAACA
TACTCGGTGGTGTCAATTCATCAAAGTCAATTGCAGAAAATCAGTTCTTT
GTGACAAAATGCTTTTAAGGAAGGATATGTTGGAGCATGAGAAAAGTTGT
GGATATCAACATTTGAATTGTCAATGGTGTGATGAGTTTCATCAGAAAAA
CCAACTTgaggtttgattttttatctttgtaATTGTTTACTAAAGTAAAG
TAGTCATGATGTTGCAAAACCTTTTTTGATTCgaatttataaaaaacaat
taattaaatttgttttttctttatatagTACCTTAGAATCTAAAAGCACT
TCCTTATTCTAAAATAGTGAAGATAAAATAAGCTTGTTTCTGGTTTATCT
GCTAGAATTTTACTGCAAAAGGATCTTTTTATACTTTTAAAGTAGAATTA
AATTTATGTTATGTCCCCAAATTTTCTCTCTTAACTTGTTTTATTGTCTT
AGGATCATTACAATGCTTGTAGAGGATTTCCGGTGAAATGTTCAAATGAA
GATTGCCAAAAGACATTTCCAAGAAAAGATTTTAAATATCTTGTAAGTGT
ATAACAAGCCAGCTGCGTTGTCAACTACGATATGCAAGGTTGTTTGTCAG
TAATGTCAAGGGTTTTATTAAGTACTCTTCAAAAATGATTCTTGTTTTCT
GTTTACTTGAAGCATGATAATTAAGCAGAACTATTGAGGATAAGTGAGGC
ACTTCAGGGAATAAATGGTGCCATACCTTTGCTTTTCAGCAGTCTTTTAA
TTGAGCGCACCTACAGTCCAAAGAAGTTCAATGATATTAAAGACTTCGTG
AACACTGGAGCTCTAGATCAATGTGATTGGAAACCTTTCATTATATCTAT
TTTGAGTATTCTCCAATCTCCACTAGAACCAGTCAAACATAAGCTTTTTA
TAACATTTCTCTCTctcactctctctctctctctcttgaTATCAGATAGA
AGATCACCTTGCAACTGAATGTGACTTCCAAGAGGTAGAATGTCAATTCT
TTTCCAATGGATGCCCTGATAAGGTAAAAACAACCACATGGTCATCCGCC
CTGCTTTTCTCATGTAATGGTTTTTGTATAAAAGGAAATGATAAAATTAT
GATCTAACTGGGTGTAATATTTTGGACAGAGATGTTTTTCTATAGGTCCA
ACAAAAGTTAAAANCTCTCTCACTCTCTCTCTTGATATCAGATAGAAGAT
CACCTTGCAACTGAATGTGACTTCCAAGAGGTAGAATGTCAATTCTTTTC
CAATGGATGCCCTGATAAGGTAAAAACAACCACATGGTCATCCGCCCTGC
TTTTCTCATGTAATGGTTTTTGTATAAAAGGAAATGATAAAATTATGATC
TAACTGGGTGTAATATTTTGGACAGAGATGTTTTTCTATAGGTccaacaa
aagttaaaaagtgcTTAAAGCTATAATATTTAGGAAGGAGATATCCTAAC
TTTAAAATTTAAGGCaacactttttaaaaagtgtaaataaaaaagctatt
aaaaattTATACTAGAAAAGCTTTGCGTCTTTATTTGTTAATTATAACAG
TTCCCTCGGAACCAGCAATCTGAACACAACCAAGATCAAATGCCATTCCA
TTTGTCGTTGGTAATAAAGGAATTGAGAGAAACAAAGAAACAGCTAGTTG
AAACCcaagagaaagaaaaatcactAGAACAAATTATACGGAATCAAAGG
GAACAGCTTGGTGAATCTGTTATTGACTCTCCGCAACCAGAGATTTCAAT
AGACAGTAGATCTTTCGTTGGAACAAGTGTAAACAATGAACCTACAGAAT
CTTCAAATAATATAGAAGATACAATTTTTCAGCTGCAAAAATCCATCAAG
GCCTTGATAGAGGAGCCTCATGTTAATTCTGCATCAAATGAAAATTGTGA
TCAGCCTACTGTCAGCAGCACCTGTTATTCAACTATAAGACGTCCTTATT
TCCATGCACGAAGGCGTTGCACACCTGCCGTTGCTGCTAACATCCCTGGT
GAAAGTGAAGGGAATCTTTTGAACCATCCTTCTAGTACTAGTTCAGATTC
AAGCCTTGATTTGGATCAAATTGCATTCCAAACAATCAAATACAATGACC
ACAAGAAAGTtggtcaaaataaaacataCTTGAAATTGAATATGAGAACT
GAAAGAATAAATCTTGATTTTCGAGTTGAATTTCCAAAGACATTTGAGCA
CATACCAGAACGTTTGAGGAGCCGCTGTAGATTACACAATGAATCATTTG
CTTTCTCTACTGGTATCAAATTCAGTGTTTTGTATATCTTGATGCCATTC
GGTGAATACAAACAAGACCAATTTTCTTTTGTCCAGAGTGTGGAGTTTGT
TGGTAAAAGGGGTCATCTTATTTTAGATAAATCATCCGactatttcaaga
attttcgcACCTTGAATATGAGGCTGAACCATTTTTTTGAGAGGGATGAA
GATGATAATTTTATACTATGTATGCTTGTAAAATATTAGAACTTGTTTTG
ATTGAGGTTCAGTTTTGATTCAatcatttcactttttttatagaACAGCT
TTAAATTTAAAGCTTTTCAATCGATTCTGGTAAGCCCGTGTATaatggct
gaaatttttatatttGTCTTAATTTTCTTTTGGGATTAAACATGCATACC
ATATAAACACACTATGGCTCAAACATGGTGGAAAAAGGTACAATACTGGT
CTTGCTTCCAtctcaaaaacataaaaacaacgTCCTGAATATGATGTTCG
ATGAACGTTGAACCAACTTTGTGACTTCTAGGTTTCTTAGATTATTCCAA
ATCTAGATTTAGAATGCCATGCTTTTAGAGCctatttttaatttaatata
aTTACTAGTGGCAAGAATAGTGAAATATAAGATATTTCTATCAAATTTAT
CATTCATTCGCAATCTAATACCCTCTGATGGTCCtgattgattttttatt
gaatcATTTAGGTTTAGATACAATGAAATTTGatattgaaattgttttga
acttcaaaatttagatttttgacaTTCAATAGACGAAGGTATCTCTGTAG
GCCATCTAAAGGAAGATTATTAAATCCATGTTAACatatattttcgttat
ttttttcatttactgtTTGATAGAAATAAagtatttaaaatatttataat
aaccaaaaaaattttgaaattttcaaatccatgttaatattatattttca
ttaattttttcatatactttttgatagaaaaaaaagtattttaaatattt
atgatgaccaaaaaatattttgaacagaTGGATAGGCTGGGCCTGTCATT
CATTTTGTAATATATTtgtgtaataaaatttaaattcCGATATTAATAAA
TTTGTGTGTCAATTCCACAGTACCCAAGGTGTTTTAAACCAGGCTATCTT
ATTTCTCGAATTTTTTATGAaccgaactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014275XLOC_014275Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025415-exon-sc0000535-1491911889:51906..52364TCONS_00025415-exon-sc0000535-1491911889:51906..52364Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1510915933:51906..52364TCONS_00025415-exon-sc0000535-1510915933:51906..52364Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1575043694:51906..52364TCONS_00025415-exon-sc0000535-1575043694:51906..52364Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1491911889:53029..53083TCONS_00025415-exon-sc0000535-1491911889:53029..53083Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1510915933:53029..53083TCONS_00025415-exon-sc0000535-1510915933:53029..53083Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1575043694:53029..53083TCONS_00025415-exon-sc0000535-1575043694:53029..53083Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1491911889:53528..53638TCONS_00025415-exon-sc0000535-1491911889:53528..53638Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1510915933:53528..53638TCONS_00025415-exon-sc0000535-1510915933:53528..53638Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1575043694:53528..53638TCONS_00025415-exon-sc0000535-1575043694:53528..53638Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1491911889:54101..54265TCONS_00025415-exon-sc0000535-1491911889:54101..54265Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1510915933:54101..54265TCONS_00025415-exon-sc0000535-1510915933:54101..54265Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1575043694:54101..54265TCONS_00025415-exon-sc0000535-1575043694:54101..54265Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1491911889:54558..54647TCONS_00025415-exon-sc0000535-1491911889:54558..54647Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1510915933:54558..54647TCONS_00025415-exon-sc0000535-1510915933:54558..54647Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1575043694:54558..54647TCONS_00025415-exon-sc0000535-1575043694:54558..54647Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1491911889:55051..55128TCONS_00025415-exon-sc0000535-1491911889:55051..55128Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1510915933:55051..55128TCONS_00025415-exon-sc0000535-1510915933:55051..55128Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1575043694:55051..55128TCONS_00025415-exon-sc0000535-1575043694:55051..55128Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1491911889:55656..57535TCONS_00025415-exon-sc0000535-1491911889:55656..57535Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1510915933:55656..57535TCONS_00025415-exon-sc0000535-1510915933:55656..57535Clytia hemisphaericaexon
TCONS_00025415-exon-sc0000535-1575043694:55656..57535TCONS_00025415-exon-sc0000535-1575043694:55656..57535Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000535supercontigsc0000535:51906..57535 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56539	1.28963	13.5529	15.5988	1.04641	0.977885	1.33592	1.16946	0.750538	1.07756	1.08009	0.42241	0.619271	0.377483	0.425284	0.485177	0.54198	0.623004	0.32994	0.232674	0.358806	0.381847	1.86448	2.04676	0.811369	1.00214	0.342324	0.325842	1.45288	1.60234
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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