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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025385 ID=TCONS_00025385|Name=TCONS_00025385|organism=Clytia hemisphaerica|type=transcript|length=308bp
GAAGTATTTCTTGGCAATTGTGATGCAATGGCTTTGCGactgatattttt
gtttttatttctattgGGATTATATCAAAGAGCAACAAGTTATCCAATCA
AAATCCCTTGTTCTGATTCACTTTGTCGAAACTTGCATGATGGAAGTCTT
AGGAAAGATGGTATGTACGCATTAAAGATTTATCCCAATTATTTTTTACA
TTGTTCCAATGGAGAAGCGTTTTGCAATGCATGTTGGCCGTACAGTTTGG
TGTTCAGTGAAAAATGTGGACAATGTTTGACTATAGGGCGTAATAAATGT
TGGTGACG Run BLAST on NCBI protein sequence of TCONS_00025385-protein >TCONS_00025385-protein ID=TCONS_00025385-protein|Name=TCONS_00025385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
EVFLGNCDAMALRLIFLFLFLLGLYQRATSYPIKIPCSDSLCRNLHDGSL
RKDGMYALKIYPNYFLHCSNGEAFCNACWPYSLVFSEKCGQCLTIGRNKC
W Run BLAST on NCBI transcript from alignment at sc0000533:104493..108655+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025385 ID=TCONS_00025385|Name=TCONS_00025385|organism=Clytia hemisphaerica|type=transcript|length=4163bp|location=Sequence derived from alignment at sc0000533:104493..108655+ (Clytia hemisphaerica)
GAAGTATTTCTTGGCAATTGTGATGCAATGGCTTTGCGactgatattttt
gtttttatttctattgGGTAAGTTTTCTCTATGTACGGTTTTTTAAGTAA
GGACAAAAAAAGGTATGAGCATACTCCGTAACTTCGTGTAATGTCGACAT
ATCTTGTATAACTTcgtcatagcaactatctggtcttgAAAATGTTTATA
GATAAAACCCTCTGAATAAGCTGTAAAAAAAATCACTCTTACTACTCATA
ACTACTTTGCAGACCAGTTGCTATgacggaattagacaaggtatgtcgaC
ATTTTTNACTACTCATGACTACTTTGCAGACCAGTTGCTATgacggaatt
agacaaggtatgtcgacatttttaggcttgaaaccctTAAAACCcataaa
aagttaagaacatccaaagagCTTCAGATGGAAAAGTACAGCAGGTTACt
aaaacaatatattttttacaGGATTATATCAAAGAGCAACAAGTTATCCA
ATCAAAATCCCTTGTAAGTTAAACTTTCATtttctgaatcgcagacctct
acaaaaccataGGTAGTATATCCCATCTATAAAGAGCACGCATCCGTCGT
AAGAACATCTGTCGTAAAGCTCTTCTTTGAATGACCTGCAAAGCTGCAAA
CTGAAGAGGTAGATTTCTTGAATCCTAATTTCGTGCAAAAACCGACACCA
ACAGTCCctggggtacttaggcaaaagaGGTGATAGGTATGTTCGAGCCA
GTCTCTCAAAGGTTCCCAAAATCACATAAATCGATAATAGAGTCGCAATT
TTGAACCAAACTGTGGAAAAAATCGCCCAAAATTTTGACAGAAATCACTC
AcaagaatttcaaaactttttctctcaaagggtcgatttatGATTTTCGA
CTCGGACATATCCATCACGTCTCGCAAACCTAGTTTTACCCCCGGGCCAC
CAATCAAGAATGAACCCCCTCTGCATTTTCAACTTCAATATCATTTCCAA
GAATCTTTATAACCTGCAGAAAATTTCACAATTAGCCCTGACGGCTAAAT
AACATATTGTTTATAAATGCCAAAggaaaaaattgttaaatcacACTCGT
GTAAAAATTGATTGTCCAGGGTGGGGCTCGGTTCGTTTTTCACACGGGTG
TGAAATCGTAAATTACACCCTTAGTGTTTAGACTGTTTACACCATGTTGA
ACTAAGCATCAGACTAAAACACCTCAAGTTTGAGAAGAATTAAGTCAGAT
TATGATTGCATATATTGAGCGTTTAGTTTGATAATTGTTCAACAAGGTGT
AAACATATAGGGTGTCAATTACCTTTTCACACGCGTGTGAAAAACGAACT
GAGTCCCGCCCTGGGAAATCAGTTTTCATACGAGTGTGATTTAACGATTT
CTCTAATTTTACAGGTTCTGATTCACTTTGTCGAAACTTGCATGATGGAA
GTCTTAGGAAAGATGGTATGTACGCATTAAAGATTTATCCCAATTATTTT
TTACATTGTTCCAATGGAGAAGCGTTTTGCAATGCATGTTGGCCGTACAG
TTTGGTGTTCAGTGAAAAATGTGGACAATGTTTGACTATAGGGCGTAGTA
AGTCTATTTCATTTATTCATTTACTCTCTAACCACTCCAAACTTCcagga
caaatttttatataaagtaaaatcctcataatttatgcaaaaattGATGA
CTTACttaatatttcaatctcaaaaacctACAATCGAATATGTTGATTGA
ACAGATAATTGTAAtcttattttaatcattttaagCCCAGTTAAGATgat
gagttttgaggatttacCTTGTATATAAAATAATTGTGTCCACTTTTTCC
GTGACACACCGTACATTATTCTTTGCACCTGTTTCAGAGCAAGTAAAATC
CCATTTAATCATTTTCTGTGAGTATTTATTTAAAAACCATTGGTTGGATT
GATGTAAATGTGTATATGTTACATTGATCACATAGCACGTTAGatggata
cacgttttttcttttattagaacccagtttataagaacattgaggctgaa
attcgtcgaaaaattagaacatcgtaagaacatgcccagcctcagtttgg
aaaaaaatgacaagaaactacaattttttcctcttttcaagcagttttaa
acaaacttaGGAATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtagtct
gaaaatttaagaacgcatctaagaacatttcaggctgaaaattgctaaaa
aaataagcacatccaggctcagccaaattttaggtgttctacacgctttt
tttttataagaatggtctaaatccatttcatcatggatgttcttaacttt
ttttggaaaatcatcctaaaatattcttacagcattcttaggttagaatc
ctaattcagactagatttaacatttagtacatacgtctcgaACATAAAAT
GGCTTTTTTGTTGAAGGGAGAGCCTTACTTGGAgtggtaattggcaattt
ataattgaaaatgctctaaaaatggcattcttttatttttaagcttgagt
agcaaaattccatgatggtgatattcttagcattattcttaattttttgg
ccattttcatcatggacattcttataaagtgtattcttataaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttttttgag
ggtttaggggggggggttccaaaattttttcaatggaaAAGGGGGTGGGG
GTGCGAAATATTTTTGCCAACTCAAGAGATAACTCAGGAGGTCAAATTTC
GTGGTTTCAcatttgaagatttgaagattttttttcatattattgtttta
attctgtatatttataaaaaatcatcGTGATAGCCTCACAATTTTGATTC
CTATAGCTCTTAATATTGTGGAGAAATTGGTTCAGTGGACTAAGAGAGAA
TGTTTGTTAAGGGATCTTACAATTTCATATGTCAGTATAGTCTAGCCTTT
ATAAAACGAGCTGAAAATACAGTACTTTTAGCAAATAAAGtggttaaaaa
tttaatttttttttgcatatgCAAATAAAATCTTTACTTTTAAATTCCAT
ATGATTCAGACATTGAAAGCCTCAATTCTGGACAGAATCATTCCGAAAAA
GAGCCATGTTATAAGCATATCAGGAGTCAAGAAGCGAAATTTTcccctgt
cggcgcaaaccagggttgcgcctccttagtctctGGTAATATTATTACCT
TTAAACGCAACTCAGAATATTACTCCTGTGATATTAAGATATTGCATATG
CAAATAAAATCTTTACTTTTAAATTCTGTATGATTCAGACATTGAAAGCC
TCATTTCTGGCCAGAATCAGTCCGAAAAAGAGCCATGTTTGAAGGAAATG
AGgagtcgaaaatcaaaattttctcattttcactcccccctagtagatac
tttctgaccactccctaaagAATGTTCCCCTacggggccgtccacatagt
acgtacgcactaaaggGGGAGGggagtcttctcaaaagcgtatgcttgcg
tacagggggaggggagaggtcaaaggaaaatgtacgtacgcagagaaaat
ttttttcatagccctttttcgCTGTtcttttgtcgacttttacgcttgtt
attatacgcatcaaggaaaagaaaaagattcttgataaacatgtatgaaa
taaaggtccgaaccaaacgatttgaattcaaaattttcttcaaccgaggg
gggggggtaaataaAAAGGACGTACTTACCagagggggtatagccattta
cGTAtacttgcgtacagggggagggggtactcgattttcgacattttagt
gcgtacgtactatgtggactgTAAATCATTCTCCTTTCATTTTATAGATA
AATGTTGGTGACG Coding sequence (CDS) from alignment at sc0000533:104493..108655+ >TCONS_00025385 ID=TCONS_00025385|Name=TCONS_00025385|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0000533:104493..108655+ (Clytia hemisphaerica)
GAAGTATTTCTTGGCAATTGTGATGCAATGGCTTTGCGactgatattttt
gtttttatttctattgGGATTATATCAAAGAGCAACAAGTTATCCAATCA
AAATCCCTTGTTCTGATTCACTTTGTCGAAACTTGCATGATGGAAGTCTT
AGGAAAGATGGTATGTACGCATTAAAGATTTATCCCAATTATTTTTTACA
TTGTTCCAATGGAGAAGCGTTTTGCAATGCATGTTGGCCGTACAGTTTGG
TGTTCAGTGAAAAATGTGGACAATGTTTGACTATAGGGCGTAATAAATGT
TGGTGAGAAGTATTTCTTGGCAATTGTGATGCAATGGCTTTGCGactgat
atttttgtttttatttctattgGGATTATATCAAAGAGCAACAAGTTATC
CAATCAAAATCCCTTGTTCTGATTCACTTTGTCGAAACTTGCATGATGGA
AGTCTTAGGAAAGATGGTATGTACGCATTAAAGATTTATCCCAATTATTT
TTTACATTGTTCCAATGGAGAAGCGTTTTGCAATGCATGTTGGCCGTACA
GTTTGGTGTTCAGTGAAAAATGTGGACAATGTTTGACTATAGGGCGTAAT
AAATGTTGGTGAGAAGTATTTCTTGGCAATTGTGATGCAATGGCTTTGCG
actgatatttttgtttttatttctattgGGATTATATCAAAGAGCAACAA
GTTATCCAATCAAAATCCCTTGTTCTGATTCACTTTGTCGAAACTTGCAT
GATGGAAGTCTTAGGAAAGATGGTATGTACGCATTAAAGATTTATCCCAA
TTATTTTTTACATTGTTCCAATGGAGAAGCGTTTTGCAATGCATGTTGGC
CGTACAGTTTGGTGTTCAGTGAAAAATGTGGACAATGTTTGACTATAGGG
CGTAATAAATGTTGGTGAGAAGTATTTCTTGGCAATTGTGATGCAATGGC
TTTGCGactgatatttttgtttttatttctattgGGATTATATCAAAGAG
CAACAAGTTATCCAATCAAAATCCCTTGTTCTGATTCACTTTGTCGAAAC
TTGCATGATGGAAGTCTTAGGAAAGATGGTATGTACGCATTAAAGATTTA
TCCCAATTATTTTTTACATTGTTCCAATGGAGAAGCGTTTTGCAATGCAT
GTTGGCCGTACAGTTTGGTGTTCAGTGAAAAATGTGGACAATGTTTGACT
ATAGGGCGTAATAAATGTTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025385-exon-sc0000533-1491911889:104493..104559 | TCONS_00025385-exon-sc0000533-1491911889:104493..104559 | Clytia hemisphaerica | exon |
| TCONS_00025385-exon-sc0000533-1510915933:104493..104559 | TCONS_00025385-exon-sc0000533-1510915933:104493..104559 | Clytia hemisphaerica | exon |
| TCONS_00025385-exon-sc0000533-1575043694:104493..104559 | TCONS_00025385-exon-sc0000533-1575043694:104493..104559 | Clytia hemisphaerica | exon |
| TCONS_00025385-exon-sc0000533-1491911889:104964..105005 | TCONS_00025385-exon-sc0000533-1491911889:104964..105005 | Clytia hemisphaerica | exon |
| TCONS_00025385-exon-sc0000533-1510915933:104964..105005 | TCONS_00025385-exon-sc0000533-1510915933:104964..105005 | Clytia hemisphaerica | exon |
| TCONS_00025385-exon-sc0000533-1575043694:104964..105005 | TCONS_00025385-exon-sc0000533-1575043694:104964..105005 | Clytia hemisphaerica | exon |
| TCONS_00025385-exon-sc0000533-1491911889:105907..106089 | TCONS_00025385-exon-sc0000533-1491911889:105907..106089 | Clytia hemisphaerica | exon |
| TCONS_00025385-exon-sc0000533-1510915933:105907..106089 | TCONS_00025385-exon-sc0000533-1510915933:105907..106089 | Clytia hemisphaerica | exon |
| TCONS_00025385-exon-sc0000533-1575043694:105907..106089 | TCONS_00025385-exon-sc0000533-1575043694:105907..106089 | Clytia hemisphaerica | exon |
| TCONS_00025385-exon-sc0000533-1491911889:108640..108655 | TCONS_00025385-exon-sc0000533-1491911889:108640..108655 | Clytia hemisphaerica | exon |
| TCONS_00025385-exon-sc0000533-1510915933:108640..108655 | TCONS_00025385-exon-sc0000533-1510915933:108640..108655 | Clytia hemisphaerica | exon |
| TCONS_00025385-exon-sc0000533-1575043694:108640..108655 | TCONS_00025385-exon-sc0000533-1575043694:108640..108655 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000533 | supercontig | sc0000533:104493..108655 + |
Blast
The following BLAST results are available for this feature:
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