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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025383 ID=TCONS_00025383|Name=TCONS_00025383|organism=Clytia hemisphaerica|type=transcript|length=696bp
GTTTTCTGTAACACATAACGTGCCCTGCTCATCATGTGCcaaaaaataac
attgattTACTGTTCGCTGCCCTTCAGCAAAAAGATCGGTTGCTATGGCT
CTTGGTGGAGGTATTGTTGCTATGGACACTTCGATTGAAGCCATCTCGAT
GGATTTAGGAGTGGATGTTGGTACAGCTGCCGTTGATGTGACCGATATCG
ATTCTGGCTTTGAGGTTTGTATGGTTGTAATGGAATCTGTACGACCTGTT
AATTTTGTCATCGAGGTGGCTGACACATTTGACTTTGACGGCTCGGTCGG
TTTTACACTGGTTTTGTTTTTTCTCTCTTCATCTCGTTTTTGTTTCTGAA
CCTCTTTTCGATATCAATCCACTTTTTGACCGAAAAACAACGTTTTAAGA
ATCGTCGACATCGTTTACGAAGATGTatgtcttttatatttttcaggttG
GGAAGTTTGGTGATTCCATAACATAGTCCCCTGGCGATTTCGTCTGCTTT
TGATTGAGATAGATATCCTGAGGTATTGTTTTCTTCCGGTGTGCGAGGCT
CAGGCAAAATGTTTCTGAAGTTCTAACCCACTATCGGTTTCAGACGCTAC
AACagcaatttggaaaaaaaaatgaagaaagtaaGTTTCCAATAAACCAA
CTTCATTTCTGAGCATTCAACTTGACTGTTCGTAGTAATGTATTTT Run BLAST on NCBI transcript from alignment at sc0000533:99801..103174+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025383 ID=TCONS_00025383|Name=TCONS_00025383|organism=Clytia hemisphaerica|type=transcript|length=3374bp|location=Sequence derived from alignment at sc0000533:99801..103174+ (Clytia hemisphaerica)
GTTTTCTGTAACACATAACGTGCCCTGCTCATCATGTGCcaaaaaataac
attgattTACTGTTCGCTGCCCTTCAGCAAAAAGATCGGTTGCTATGGCT
CTTGGTGGAGGTATTGTTGCTATGGACACTTCGATTGAAGCCATCTCGAT
GGATTTAGGAGTGGATGTTGGTACAGCTGCCGTTGATGTGACCGATATCG
ATTCTGGCTTTGAGGTTTGTATGGTTGTAATGGAATCTGTACGACCTGTT
AATTTTGTCATCGAGGTGCTAGATacatttgattttgatattttgacagg
ttttgcattgtttttttctttccttcctCTCAACATTTTCCTGCATTGCT
GCTGCAAGTTTTTGTTTCTGAACCTCTTTTTAATATCAATCCACTTTTTA
ACCGAAAAACAACGTTTTAAGAATCGTCGACATCGTTTACGAAAACGTAT
GTCTTTTATATTTGTCAGGTTGCGAAGTTTGGTGACTCCAAAACATGGTC
CTCTGGCGATTCCGTCTGCTTCTGATTGAGATAGATATTCTGTGGTATCT
TTTTCTATCAGTGTGTGAGACTTGGGTGTTAAATTGCTCTGAATTTCTTC
CCGATAATCCTTCTCAGATGCTACAATGACGATGCGGAGACTTAAAGTCA
AGAAAGTAAATTTCCAATACAACTGCATTCTTGAGATTGACCATTTAGCT
CAACACCTCGTCGTAGATTGATACTAAAAGATGTTCtgtttctttcattt
tgtaAGCTAGCTAGAGCAAAAGTATGAATTCAATTAAAATAATCTCACGT
GAAATATTCACCCCTttgcaaaataaaaattgactTAGATTAGAGAAATA
TCAAATACTTTACAGATAAAAGAACGATATTAATGCAATTTTCCCAGATG
TCAATTAAGGCAAATTTAAGAACCTTATTTTTTCGTTATAGAATACTAAT
GACTTAATTTAGCATACCCAGAACTAGATATtggtctcaaaataatttaa
gaacaatgacATTTTTCACAGCCTTACCCAAATTACTTGCATCCAAAATT
AAGGATGTTTACAGACTTCATTAACTCGGAGATATCGTCCGACTAATAAT
TATGTCAGCCCTGAGTCCACCTCAATCTGGGTTCAAGTTTTTATTCGTAA
AGTATAGGTTTCTTTTGAACTGAGGCTAGGAGTGTGCTTAAATCTTTATT
GTCCTATAACAAAACATCTATTGTTTTTAAGCCCAAATCTCAGCCTTGCT
ATTGTTATTAATGGACACCAGTCTAACTTTGTAGGATTTTTTTATAGCAG
ACAAAACAGTTTCTGGTTTTTTTTCTGTTGAATCAGAATACCGAGTCCAG
TGTCATTTCCTTTTAGTTTGTAGCCAAAATTATTCATTGATATTTAAAGG
ATGTTTTACCTATGATGTTAAAGTAAAGATTGGTGAACTTTAATCATGAA
TTTTTTCGACTTGTTTTATTAAACATTCAAGGAGCTCAAGAGGTAAAAAG
GAGTCATACAATTTTTCTCAGTGTAATATTGATAGCATTAAGTATTGATA
TATGTGATCCTAGTTACATTGGATAATCTGTTCATTTTGGCCCTCACCAT
ATACACTTTAGGTGGTTTATAAGCACAAAATTTCTATAGTTTCATCAAAG
GTAAATGTGATACAATCGTTtcctttaaaacaaatttttttatttatttt
atttaacattTATTCGActtcaatttttacaaaattgttcTTCCGTCTAA
ACTaagaattataaaaatgaaaatgcaaaaGATATAAATTATTAAATTAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGGACTGGCAAGAGATTGAATTAA
GGATGAGATATAGGTATAGAGCTAGGCCTGCTGGAAGTCAAGAAAACATG
GACGGTAAACAAAAGGCTGTAAGAAATTGTGCTCTCACGCTCATATATAA
CAGTATAACATGTTGAAGTTGCTCGATTTACTAGGCGTTCTAGAAATAAA
GCTGTTTGCGGTGATGCCGTACTGGATTTTGTCAAGGGTGATCTTGATGA
TTGTGAAACGATGGTGATTGATTCTTTGGGTCTCTCTGTAGAGGTGGCTG
ACACATTTGACTTTGACGGCTCGGTCGGTTTTACACTGGTTTTGTTTTTT
CTCTCTTCATCTCGTTTTTGTTTCTGAACCTCTTTTCGATATCAATCCAC
TTTTTGACCGAAAAACAACGTTTTAAGAATCGTCGACATCGTTTACGAAG
ATGTatgtcttttatatttttcaggttGGGAAGTTTGGTGATTCCATAAC
ATAGTCCCCTGGCGATTTCGTCTGCTTTTGATTGAGATAGATATCCTGAG
GTATTGTTTTCTTCCGGTGTGCGAGGCTCAGGCAAAATGTTTCTGAAGTT
CTAACCCACTATCGGTTTCAGACGCTACAACagcaatttggaaaaaaaaa
tgaagaaagtaaGTTTCCAATAAACCAACTTCATTTCTGAGCATTCAACT
TGACTGTTCGTAGTAATGTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025383-exon-sc0000533-1491911889:99801..100065 | TCONS_00025383-exon-sc0000533-1491911889:99801..100065 | Clytia hemisphaerica | exon |
| TCONS_00025383-exon-sc0000533-1510915933:99801..100065 | TCONS_00025383-exon-sc0000533-1510915933:99801..100065 | Clytia hemisphaerica | exon |
| TCONS_00025383-exon-sc0000533-1575043694:99801..100065 | TCONS_00025383-exon-sc0000533-1575043694:99801..100065 | Clytia hemisphaerica | exon |
| TCONS_00025383-exon-sc0000533-1491911889:102744..103174 | TCONS_00025383-exon-sc0000533-1491911889:102744..103174 | Clytia hemisphaerica | exon |
| TCONS_00025383-exon-sc0000533-1510915933:102744..103174 | TCONS_00025383-exon-sc0000533-1510915933:102744..103174 | Clytia hemisphaerica | exon |
| TCONS_00025383-exon-sc0000533-1575043694:102744..103174 | TCONS_00025383-exon-sc0000533-1575043694:102744..103174 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000533 | supercontig | sc0000533:99801..103174 + |
Blast
The following BLAST results are available for this feature:
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