TCONS_00025386 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025386
Unique NameTCONS_00025386
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025386 ID=TCONS_00025386|Name=TCONS_00025386|organism=Clytia hemisphaerica|type=transcript|length=1436bp
AaacttttctaattttgatcCATCGGTAGAGTTTTCTCAACAAAGTCGAG
GATTTCTTAAAGATCGCGTAGaaaaaaaaaatgattagaaATGTTGCATT
TGTCCTTGGTCgacaatcaaaaattttcatccgaGGTGCTCACAGGGCTG
CCAATTCAAAACAATCTCGATTCTTAACACATAAATCAGTCCAACTACCC
ATCTTAACGGCATTTGGATCATACATCGTCTACAGATCAACGCAAGCAAA
TACAGTTGATGCAGCTGAGGATCACCAGAATGAATCTAAATGGACTTTAT
ACCAATACGCAACATGCCCTTTTTGTTGCAAAGTTCGTAGCTTCTTAGAT
TACTATGGTGTTGATTATGAAATAGTGGAGGTGAATCCTGTCTCAAGGAA
GGAGATTAAATTTTCAGAATATCGCAAAGTTCCTTTCCTAACATCGAAAG
AACACCAGTTGAACGGCTCTTCGTTGATATGCAGTgtgttgaaaacacaa
cttatcACAGAAAGTGAAgtttcaaagattttaacaTACTACCCTAttct
tgaaaatgaagatgggAAAAAGAAGAGCTTTGACTATCAAAACATATACA
ATGTTATGTACGAGACTGGCATTGGTAAAGAAGCGCATGACAAAGTCAGG
GACGAAATGAAATGGAGACGGTGGGTAGATGAGGTGTTCGTCCACACATT
ATCACCAAACATCTATCGTACATGGGGTGAATCACTGCAAGCTATGGAGT
ATATCACCAAAGTTGGTAATTTCTCTGACTTTGAAAGGACTCTCATCTAT
TATTCTGGTGCAGTGGCGATGTACCTTATTGGAAAACGGCTGAAACACAG
GCATCACTTGAGGAATGAGGTTCGTGAGAGTTTGTATGAAGAAACATATC
GCTGGTTAAAAGCTGTTGGTAAAAACCCTTATCAAGGTGGTGACCAACCC
AATATGGCTGATTTGAATATGTATGGAGTTTTGAGTGCAATCGAAGGGTA
TGACGCGTTCTCAGACCTTCTACAAAACACCAATATTGGTCCTTGGTACC
AAAgaatgaaaacgaaagtgaaaaacaaagatggtaTCCAAGAAGTGCAA
CGACTTAAAGCAATGGTTAATGACAATAAATAATTTATTTGTGTATATAT
TTTGCTTGGAAATTTTGGTCTTTTGAGCtatttttctaaactttttcttc
atttttcgcATGAGGTTAAAATCAAGGAGTATAAACAGATCTCTGTAATG
TTTAATTGTCTTGTACTTTCGATCCTCGGTATGATAGCCAATATACCAGC
ACCTGTTTATCATTTATTTTACAAATCATTTGGCTTTTTGTATCAAAAGA
AGTTAAATGTAAactgttttaaaacaaaaatttacttgaAGATGAGGTTT
TAAACTTccctaaatattttcattttttgactttgt
Run BLAST on NCBI

transcript from alignment at sc0000533:146178..163131+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025386 ID=TCONS_00025386|Name=TCONS_00025386|organism=Clytia hemisphaerica|type=transcript|length=16954bp|location=Sequence derived from alignment at sc0000533:146178..163131+ (Clytia hemisphaerica)
AaacttttctaattttgatcCATCGGTAGAGTTTTCTCAACAAAGTCGAG
GATTTCTTAAAGATCGCGTAGGTAAGTAGTAGTCCCATTACATCATAGAT
GTCTTTTCCCttaaaatttggttggtttTCATTTTCAACAGTCACCACAG
TACAGTTGCATGACTTGTCACACTAGACTAGACAGACCTAAGTGTGTGAT
GTTATAACCGTGAagcagtagcggcctggcttaattttcttggtggtgca
aactatgaaattggcgcccctggtatttttgtccttatttgcatcattaa
gtgaaaatattaaactgtaagagctgACTGGTTGAGAAAGTAACGCCCCT
AatctttgaaatggaaattttatacctgATAGTGATAAgtctatattttt
gctttctaaaactcttatcagaaaaataaccttaaaatgtttaatttggg
taaaaaattttggtgtaagaaaggtcaaacagcttaaaagatcttttaaa
acagagaaagttagtcagtacCACAGGGAgaatcaacaagttttgatcat
tttggcaatctctcattttgggggtgagcatttgTAACTAGGGGAAAGTG
AGGAATAAATTTGAGTCGAATCGAGTTTGCTAAATAATGTTAAATTTCTC
TTCTTGCAACAAAACTTAGATGTCGAATGAAAACCTATGGCTAAATCTTC
ATGATGCACCGACAAGCACGGggacttagaaaattttttgaaacttttca
atacttttttaCCCCGGTTCGAAGCTACATATTTCCGATTACGAAACACG
TAGTCTATACCACTGGGCCACGACGGCTGCCAATTTTCCGAAATTCAAGG
TTATTTATAGCTAGAGTGACATATATAGTATATACGGGTGAACAGACCtc
acgagttaggctaactgttatgatcGCCATTCCTCCAGGAAGACCCCACA
CACGGGTGCACCACCGGGAGGGTGCACAGCCGTCTGGGTGCATGTTAGGG
ATGCTGCCTATCCCTAACAAAACGCTGCGCTCGCGCACAATATTTTGCCC
GCGCGCACCCGCGCGGTGTACTTGCAAGGCCGGTGCATCATGAAGATTTA
GCCATCGGTGAATGAAACAACagccgccatcttggatttccATCAAAACT
GACTTTCGTATCCGTCAAACAAACATTTCTAGCGGGCCATGGAAGAGCAC
TCTCGTACGCCCAATTCATAAGGGCGGCGACACATTCTCtaaacccctgg
tggatacacaacacttctcttacttctgattcaatattgattagaagttt
agaaaaaattcaagagaaaggatGGAGGAAGAGAGTAAAATAAAGCGCCG
CAGGTGAAAAAAATTAACCTTGTACTCGTAGAAGGCGCTATAAACATGCT
GAAAGGCGCCAAattgcccaattaaacatcaacaaaattttggcgccccc
ttggaaagctcttttggcgcccctctcagatctttctgggtggtgcactg
cacaccctgcaccccctgccaggccgccactgccgtgaagtcgggtaaaa
cttgcatcagtggaggcaaacatgcatagctctcaaatgaatgacctgtc
tggtcattaaaatacaaacttaaatcaaaacaaaaatggtagagtactgT
AGAGCTGCGAGTGGATCTGCACAGTTCATTTGTtggatttgttttgaaat
ttttaggggTCGTCGAcaaacaatttttctttttgaacggcttctggccg
taaggggtgggagggggtcactgaaatgccgttaaaaaagtttaaaaaaa
agggaagtctcacttacaaatttcatcagtccaaaaagtagaaacatgtG
AAGAAAGTGTTAAATAGGTATTTACCAACCTAGTGATTGCTGATCCTTGC
TTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATTTACAGATTACACATAAAGCCCCACTGGCTATCATATATTATTGTTTA
TCACTTTGTATTATTCATCTATAAGGTAGAGATTAACAGAAAGGGCTAAG
ACCAAAGCAACCACACGACATTCACCTTATTCCCGATCACCAATTAATGC
TTCGACGAGAAAAATGACTGATCACGTGACGAAAGTCTGCAATTTTTCCC
TCCGCCTCAGTTGACTCCACCCATCCCACCCTGACTTACTGCGGGGCTTC
ttggagtttcaaaattgaaaggtcacggCTCAAAACCATATGTTTATTCC
Atgcgaaaagaagaactttgaggattacgaattgaaagaacatggcggcc
atgaaccagtgaaagtatttacttttgaagaatttttttgaccGCTAAGA
CGTAGGGAGGGCCCTCTCTAGGGGGAAGGGGTCTGAACCTTAAGgctgtt
aaaaaaaaggaaagtcgtttgtcgacggccccttactgctttgattggtc
agtcatttgatggctatgcatgtttgcctccactgatgcaagttacccga
cttcacagtaaCTAGCCATATTGTTATTGATTTTAAGGGTTGCAAAGCGC
TCGCGGACACGGTAGTCCAGGGTATAGTAGCCATGGTCATaacgcaagtt
gctagcaaaataaggggcACTACTCTAAAAATCCATAAAGAGACAGGGAC
TGTCTAGATGCGTGCCCACACAGTCTTACTATTAACCAGAGAAATCAAAT
GAAATGGaatagaaaaacagcttctcTGATTACCCAGGCCAGAGTGTACT
GATTCTGAAAATGCAGgagatttggctgaatttttttcacGCAGGAGAAA
TTGTTGGCATGCAGGAGTCTCCCACCCAATGCTGGAGAGTTGGCAGCcat
gtaccgggtgacccacgaataagttcagacgtttctcgacgtcttgaggc
tgaacaaatgtcccaaagtgcttggagtttagatatttagaaagtagata
tcctaacttaaaatttgagctatcactttctaaatttgaccaattatttg
ttctctacttatgagcttttaaagtcaaaattcacttttcggaaagtgtt
aaaaacacgtaaaaaagaggtattaaatttatgcaatcaattaaaaaatc
acttacaaattgacttatttaacgagttttatgacattaataaaaataat
taataaaaacacttttaaaagtaatttttgtttaaaacaagactagtctt
tataaaaattggcgcttttgtagatttgtcagatttttttcaaaaactgt
acatcaaaacatctaaaaataccaaatttgataccccatATTCTCAGTTA
TTAGTGGAAGTACTTCGATTTGTGAAGCATCTTTACGtcacatagaacaa
aagaaattagCAATAGAACAAAGCAATAACCAGGCATCGAAATAAGGAAT
AGAAAGtgcatcgcaattttttgataagcatgattttgtatcctaaaatg
gatcaattttcaatttttcgcttgtaagtaatccaaaaacgcatCGCAAA
TTGCAAAATGCGATACACTAATTTGATCCCTGAATAACACAAAACCACCA
TTTCGCAACCACAGGGAATCGCGATtttacggaaatgggaatcctcatat
cgaattaagcatcttctgaaaatttcattcttccccataaatgcgaaaat
gagattgtctttttaatctgccatgaagtgttatgAAATTCCTTACAATA
GAAAGACATATTCTCCTACAAAGAGGCGTCAAAAGAATCACATCGAAGAA
AAGTATGTCATTTTATCTTAACAGTTTCTTAAACTACGTCACAACCATGG
AGcactgacttttagttttatgacttgttctcactcGCTTAGTttccgta
ataaaaagaaagttgttattgtgaactttgaacatgcttgaaattgaggc
aCTAACTAACTGATGCTATGATTATAAAAGTGGATTTTTTTAACAGATTG
CTCTATAAACTTTCAGTGTGaagtaacaaattttacaccaTTTGTTGCCT
GAAAGATTCTCATCACATGAAAttaaatgtttcaataaattTGGTTGAGC
TTTGGGAAAAGCGGattaaatttctttcctttATCTAATGATGCAGTTGT
GAATTGATGCGATTCGGTTATATCATCTGATATCATTGTTCCCAAAAAAC
AGTGTTCCCCAAAAAAAGTAAAACcgaataacgaaaaaaaaaaaacttta
agattAACCAACTTAATTTTTAGATTAGCTGAAGGTGCATTTATTCAGCG
TTCTACGGTGAAAATTTCATTGGGAAAAAAGTCTTTGTTTTAGAGAAATG
AAGCTTCAAGCAGATCAAGTTggagattgaaaattttcaaagctaaTTAA
CTTTTGATTGACAGCTCTCGTTAAtgtcattttgatgaaatttttcattt
ttaatggtCAAACCTATGCACTTTCCAACTCAAATTTCTCGTtaatgaaa
aataggctgaatATAATTCTTTCGGCAATAGAGAGAGGAACTTTTCTTTC
TGCTGcatataaaattaattttccctTACTTTTTCAGTATACTTTTTTTG
CGGAACACACTGTATAAACCCCTAAAGTTTACGCATAATTagactcaaaa
caaaagaatttagtCACATCACGATAATTATGTAGATTTTTTTgatcaac
aacaaaagaaatccattagcattaaccaaaacaaactcccttaaggTCAA
AGGACCTGGTAAATGAGAAGCTGTATTTCTTTACACTTCTCTGGATTAAC
CTCAGATTCTAGGTCTGTGTTTCAGCTTCCAGTAACTCTTTTAACGTTCA
CTCTTTAGGTATAGggcaaaattttcccctcaactTTGGGTATCATTTTA
AAACAGCATTTTTCACAGTCTTATCTACCAACCAAAGAAAATTCCCTTTG
CTGCAACCATAATCATACAAATCCATTTGACAAAATCACCGTCTTGCAGA
tgtgatttttgtgaaaaacttttgggagttaaaggtacgtgcacacaatG
TAGCAAAACTGCTGATAGTAGATCAACTTCTTAGTGCTTAATGTATGCAT
GAATGtatgaattgaaaaaatcgCACAAATatgtgaattgaaaaaaaaac
tttgtaaatatgaaaattcactttttgattgTGTGAATGCTTGAATCTGA
ACTATTTTTTATGTGATTAGTGcaaatttttcccatttccaAAAGATAAA
ACCTTTTTTAAGTTCAGCGTTAAGATACCAATTATGTTCAATTTTAAGGT
GCATAGAATATAAACTTTTTAGAAGGCCTGTAGAAACTTATTGGGGGCTA
AAAATCTTTTGCTATGAAAAATTgctacaaaatattttttcagtcAGGGA
AACCAGCTTTAAAACTTCTGTTTGTTTGAATGAGAAAaacttttctatta
tttttgaatatttcaaaaatgtgtCATGGAATCATCCCCCCCCGCGGCAA
ACAAGGAATAATCAAATTTACGGCAGCTTTTACCGCGGCATTTGCCTCGT
GCCGCGACCAATTGCCAGGACtgttatacaatacggctagggggatttcc
caattgggggaccacaaattttaaagacaggtggggggaaaaggccagat
gggggattttagctcatattaggggggaccaaaaagctggaggacgccaT
GTGTGCTGTGCTTTGTTAGGGGATGCATCTCGTTCGGAATTGCCCacgtc
tttgtgtttttgagttaGAAACTTGATTAGTTTTATATATTAATGTTAAA
TTTGACTTAAAACATTGAATAGCAAAAAGTTAATACAATCTAGTACAATC
ATTGAATTTTTAATCCAGGAAATTGCCCCTAAATTTGGGGTAATTCTTGG
GCTGGAATTTTGTACACAATTAGCCCTATATCagaacatatcagagggga
tgcgtgcagcctaacaCTTTTATGATTATCCCCCTTTCtctaagaaaata
tttttaaattctagCAGAGCAATGCATATTTGTACTGAACTTCTTCTAGA
GATTAAATGAGGGACCCCCTAATTGGAAAAAGAGTCTTGGGACAAAAATC
AGCATGCCCTCACAGTAACCTTAATTTGTCCtgttaagaaaatataaaga
ttAAACCTTTTAGGATTCCTAAACCTTATTGGGTTTGGATTGTGGTCAAT
TCAATTTTAATACGCAGAAATTTACTTAACATTATTTTActattgcagaa
aaaaaaaatgattagaaATGTTGCATTTGTCCTTGGTCgacaatcaaaaa
ttttcatccgaGGTGCTCACAGGGCTGCCAATTCAAAACAATCTCGATTC
TTAACACATAAATCAGTCCAACTACCCATCTTAACGGCATTTGGATCATA
CATCGTCTACAGATCAACGCAAGCAAATACAGTTGATGCAGCTGAGGATC
ACCAGAATGAATCTAAATGGACTTTATACCAATACGCAACATGCCCTTTT
TGTTGCAAAGTTCGTAGCTTCTTAGATTACTATGGTGTTGATTATGAAAT
AGTGGAGGTGAATCCTGTCTCAAGGAAGGAGATTAAATTTTCAGAATATC
GCAAAGTTCCTTTCCTAACATCGAAAGAACACCAGGTATCCcttcttttg
tcattttgatTAAAGTAATATTCATTAAATGTTATAATCGTAACCACTAA
ATTCGTTTTTATAATATATACAGTTTCCATAACTGGAGTCTCCGCAAGGA
AAACACAAATTtgctcgagttaaggaaatttcgattttaaaggAGTAAGG
TTTGTAAGGCATTGTTACTGATTGGACGAGAAAACTTGATCAAGTTATAG
AGGTgtgagttaaagagactctccAAGTGAAAATCTTCCTTTCCATGCAA
TTTTAGAATATGCAAtatttgaatataaaaaaaatcaatgtgTTCCTCGT
TTCAGTTGAACGGCTCTTCGTTGATATGCAGTgtgttgaaaacacaactt
atcACAGAAAGTGAAgtttcaaagattttaacaTACTACCCTAttcttga
aaatgaagatgggAAAAAGAAGAGCTTTGACTATCAAAACATATACAATG
TTATGTACGAGACTGGCATTGGTAAAGAAGCGCATGACAAAGTCAGGTAT
GGTAAGAATTGGCCAAATAGGtagcaaatattttttttatcacGGTATTA
ACAGTTTTTTAGCGGATGCGTGAGAACTTTTATGACTGATTGTGTATCTT
CATACCAGAAGAaatttacttagaaactttacgTTCTTAATAGGGAACAG
AATCAAAGTGCATAAATCAAAGTTGTACTGTCAGAACTGGCTGCAACTAC
CAACTTCATATTTGtttatttccattgttttttgaaTCGCCAAACCATTT
ATCTAACAACTTTTTTTCATCCTCTTACCTTATTTTGAAGGGACGAAATG
AAATGGAGACGGTGGGTAGATGAGGTGTTCGTCCACACATTATCACCAAA
CATCTATCGTACATGGGGTGAATCACTGCAAGCTATGGAGTATATCACCA
AAGTTGGTAATTTCTCTGACTTTGAAAGGACTCTCATCTATTATTCTGGT
GCAGTGGCGATGTACCTTATTGGAAAACGGCTGAAACACAGGTTTAaccc
tttttttttacttacaATTTTTACAAGTGATGATTTTCGATAAAATACTT
TTTGCATCGGTACAAAGGGAAAAACATTGACTAAAAATTTTGTAAGGATT
CAACAGATTAGATTGGAAGTTTTTaatattgattttttcaatggttcccg
gagggggtacttaggctagtgaagggtatgggtatgtgctgcccttaagg
gtaccttttggAATCTGACAGTCTCGGTAAGGGTTGGAAAGATTGGAATT
TTAAATCTCAGTTCCATTAAGGGTCATAATAAAGGGGAATTTTTTCACCc
ctaaaatatctaaattttgtcaaatttgtcccgaAAAGGATCGTAAAATT
CACATAATATTCCAATTTTCCCTTTTTAGCTCCGCTAAGTGTTCGAGGGT
CAAAAGACGGGCGACACCCCCCCAGTTATCCTGTAAGCGTAGTACCCCTC
AACCCGGCAAAGCATGGTTTTAGTGGTTTACTTATTATGCTTTTTGTTCC
ATCAGGCATCACTTGAGGAATGAGGTTCGTGAGAGTTTGTATGAAGAAAC
ATATCGCTGGTTAAAAGCTGTTGGTAAAAACCCTTATCAAGGTGGTGACC
AACCCAATATGGCTGATTTGGTATGTCTATCTTTCTACCTGTCTTAGTAC
AGGCTACATAGAAACCAGTGCAAATTTAACCAACATTGAACCTTTCCTAT
GTTAGATATGTTGTACGTTGTCGCAGGCGGTTTGAAAGTCTGTCGAAGAG
GCTCGTCCTCTTTTTTTTCCTACGCTATCATTTATCTTGCTGCGAAATAC
AACCATAGATAtcttataccgggtgcgccacaaaaaagtttctttcttta
aaactaattttctcgaaatctagaATTGTTTAGAAAAACcgttcctattt
cattggaaagaagaaagataaacttaaatttttatgggtcatttattaaa
ttcgattcattagatcaaaagttatatactcaattaaatgaaaaagttac
tttctgaaagtgctcaaaaacgttaaacatcaacctatcaaattaaacag
aagcataattggTAACCTCAATTTAGCCCCAAAAATACACCTTATAAGAA
atccaaattagtttttgcttAGAATGAGGCCTACTTGAGGCATATttaaa
ttttgagcaattttgctTCAGTAGGTATTGATTTATAAGCTTTAGAATGA
GGTAACCTCATTTGGGTAACCTCAATTTAACCACATCATATTTCTAATTA
TTACTCAGGATTGAAGTGACCTCTTAAATTCGCGTTTCTTCTAAATCCAC
GAGAAATTTCTATACTTGAGTTcttcaaagttttgatatggCAACCTCAA
AATTTCACCAGATATGGTATCAGATATGACAGAAGGTAGAAATGTCACAA
AACCCCCTTTTATTTCTGACTGTGTTCACATGTACATCGTTatcttcgtt
tcagtcattaaaaatgataattagctgtctaaatgacctattgttatata
aaggaaggttgaatttcaataaaaggcagaaaattcgtcgaaaaaggtaa
aaaaatctggtaaaattcataaaaatacatcaaatatgggtttcgagata
catccagccttacatagactttatccaatcTAAAACCAAAAATCGGAGGA
AAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACCAAAAAtcggag
gaaaatttcggtaaaagtaaattaaagtgattttgatgaagattttaaac
cctttcggcctttcagtttcgaaatttatgtgtttgattattgaaaaatg
cttttaatcatgtaaaggctaatGTGATTGAcaattttaatataaaaatt
tgataggtcgattttcaacgttttagagcactttctgaaaagaacttttt
tattcaatcgacgataatttttgatctaatgaaccaaattaataaatgac
ccatccaaatttaagtttattttttttctttacaatgAAATAGgagtggt
tcttttaaaatttttagatttctagaaaggTAGTTTCAAAGAagcactag
atagagctactccgtccctattttgaatcaaaataatccgacatctttga
taagtagaccatagttcggtgccggcaatttgatTGATCAAGCCAATCTT
TCGCCTTGTCGCTTCGCGCCATTAAGgtttttttgcttggttaaacaaat
tgccggtaccgaactgtgACCTACCTTCATCAAAGATGgaacattatttt
gcttcacctgccgttgcttgggaaatatAGAGTAACTCTACCttgtgttt
tatataagatatctatgaATACAATAAATCAGTCTTGACAGTAGTTTCTT
ATTATGATATCAAAATTTCCTTCATTTTCACAGAATATGTATGGAGTTTT
GAGTGCAATCGAAGGGTATGACGCGTTCTCAGACCTTCTACAAAACACCA
ATATTGGTCCTTGGTACCAAAgaatgaaaacgaaagtgaaaaacaaagat
ggtaTCCAAGAAGTGCAACGACTTAAAGCAATGGTTAATGACAATAAATA
ATTTATTTGTGTATATATTTTGCTTGGAAATTTTGGTCTTTTGAGCtatt
tttctaaactttttcttcatttttcgcATGAGGTTAAAATCAAGGAGTAT
AAACAGATCTCTGTAATGTTTAATTGTCTTGTACTTTCGATCCTCGGTAT
GATAGCCAATATACCAGCACCTGTTTATCATTTATTTTACAAATCATTTG
GCTTTTTGTATCAAAAGAAGTTAAATGTAAactgttttaaaacaaaaatt
tacttgaAGATGAGGTTTTAAACTTccctaaatattttcattttttgact
ttgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014256XLOC_014256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025386-exon-sc0000533-1491911889:146178..146248TCONS_00025386-exon-sc0000533-1491911889:146178..146248Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1510915933:146178..146248TCONS_00025386-exon-sc0000533-1510915933:146178..146248Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1575043694:146178..146248TCONS_00025386-exon-sc0000533-1575043694:146178..146248Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1491911889:158876..159262TCONS_00025386-exon-sc0000533-1491911889:158876..159262Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1510915933:158876..159262TCONS_00025386-exon-sc0000533-1510915933:158876..159262Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1575043694:158876..159262TCONS_00025386-exon-sc0000533-1575043694:158876..159262Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1491911889:159583..159773TCONS_00025386-exon-sc0000533-1491911889:159583..159773Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1510915933:159583..159773TCONS_00025386-exon-sc0000533-1510915933:159583..159773Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1575043694:159583..159773TCONS_00025386-exon-sc0000533-1575043694:159583..159773Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1491911889:160068..160268TCONS_00025386-exon-sc0000533-1491911889:160068..160268Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1510915933:160068..160268TCONS_00025386-exon-sc0000533-1510915933:160068..160268Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1575043694:160068..160268TCONS_00025386-exon-sc0000533-1575043694:160068..160268Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1491911889:160783..160897TCONS_00025386-exon-sc0000533-1491911889:160783..160897Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1510915933:160783..160897TCONS_00025386-exon-sc0000533-1510915933:160783..160897Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1575043694:160783..160897TCONS_00025386-exon-sc0000533-1575043694:160783..160897Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1491911889:162661..163131TCONS_00025386-exon-sc0000533-1491911889:162661..163131Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1510915933:162661..163131TCONS_00025386-exon-sc0000533-1510915933:162661..163131Clytia hemisphaericaexon
TCONS_00025386-exon-sc0000533-1575043694:162661..163131TCONS_00025386-exon-sc0000533-1575043694:162661..163131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000533supercontigsc0000533:146178..163131 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02671	1.75675	0.413472	0.713164	10.5565	6.21503	9.83895	8.55708	11.4872	9.55684	10.1175	11.66	8.57817	7.62941	5.60977	6.75228	8.48157	18.5792	3.0486	4.86546	22.9842	22.0713	13.9559	13.0014	9.22516	10.1698	3.37265	3.12994	8.79624	9.64545
Blast
[Close]
BLAST of TCONS_00025386 vs. Swiss-Prot (Human)
Match: PGES2 (Prostaglandin E synthase 2 OS=Homo sapiens GN=PTGES2 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 2.910e-86
Identity = 137/272 (50.37%), Postives = 185/272 (68.01%), Query Frame = 3 
Query:  294 TLYQYATCPFCCKVRSFLDYYGVDYEIVEVNPVSRKEIKFSEYRKVPFLTSKE----HQLNGSSLICSVLKTQLITESEVSKILTYYPILE--NEDGKKKSFDYQNIYNVMY------ETGIGKEAHDKVRDEMKWRRWVDEVFVHTLSPNIYRTWGESLQAMEYITKVGNFSDFERTLIYYSGAVAMYLIGKRLKHRHHLRNEVRESLYEETYRWLKAVGKN-PYQGGDQPNMADLNMYGVLSAIEGYDAFSDLLQNTNIGPWYQRMKTKV 1070
            TLYQY TCPFC KVR+FLD++ + Y++VEVNPV R EIKFS YRKVP L ++E     QLN SS+I S LKT L++   + +I+TYYP ++  NE GK+ + ++ N Y +M       +   GKEA     +EMKWR+W D+  VH +SPN+YRT  E+L + +YI + G F   E  +  Y GA AMYLI KRLK RH L++ VRE LYE   +W+ AVGK+ P+ GG +PN+ADL +YGVL  +EG DAF DL+Q+T+I PWY R++  +
Sbjct:  103 TLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVRRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNEQGKEVT-EFGNKYWLMLNEKEAQQVYGGKEART---EEMKWRQWADDWLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQDNVREDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDLMQHTHIQPWYLRVERAI 370
The following BLAST results are available for this feature:
BLAST of TCONS_00025386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGES22.910e-8650.37Prostaglandin E synthase 2 OS=Homo sapiens GN=PTGE... [more]
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