TCONS_00025279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025279
Unique NameTCONS_00025279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025279 ID=TCONS_00025279|Name=TCONS_00025279|organism=Clytia hemisphaerica|type=transcript|length=2820bp
tttcaaatgaaatctGTTGGAGTgtgtaaaaatatatattttccgtTTGT
TTCGTCTGCTCCAAACCAAGACATATCAAGCAAGTGGTCCTCTAAAGGGC
GTTGACATGATTACAAAGACttttgattggtttatttgatcgAGACTGGT
GAGGAGTTAGACGTCCACCAACGTTCGAAACGACATGGACAACATTCGAC
CCTTGCTGACCGAGAAGttcgTACGATCATCTCAGCGATCGTAGATGCCA
TCCTGGATGGTGATAAGAAGAAACGATCTTCCGTTGAAGATGACGATTTC
GTGGACGAAGAGAACGACCCTTCCCTGCTGAAATCTCTTCAAGAAAAATC
ATNGTGGACGAAGAGAACGACCCTTCCCTGAAATCTCTTCAAGAAAAATC
ATCTCAGAAGTCTCACGTCAATGCTACTGATGTGGAATCTGCTCTTTTGG
ACGACGAAAAAGATCTATCAGGTAGTGGAGAACAAGAGTCTGGGTCTGGT
GCACAAGATTCCTCTGGATTCACTGATGAACCGATAACAGAGAAAGTCAC
ATCTACTTTTAAAAATGCTCCACTGTCCCTAACTTCCCCTGAATTAAAAA
ACACTTCTTCATCAGTTCAAAGTTCTGAGAGAAAGAAACGCGAAGAGAAT
ATCCAAGATCAAGACATCGCTGTATCTGAAAAGAAGGAAATAATTGATGA
CGCTGTCATAAGGGATGTATCAGGTTTGATTGGAAAATCACCAACTGTTC
AAGATCCAAATCGTAACGAGGTTGCTAGAGAGAGGAATGGACTAGATATG
ATTGAAAAACGAGATATTTCTGATGCTGAACGCGGTGACAAATCAGTTGA
TCAAACCGAACAATCGCATCAAGATGATAGTGAAACGATCACTAATTATA
CGGGAATCCGAGATGAGAAACAACCTGATGACCCCAAAGTTGTGAATGCT
GGCAACTCAGGATCTGGTGAATCTTCAGGCTCTGGAGCAAATGATTTTGA
AGAAGGCGAAGACGGAGATGAAGCCAATGTCGTCAACAAACGAAATCAAA
TCTTGCAAGATGAAGAGGTCCAATCAAATGCTCCAGAAATGAAAAACTCT
TCGACGCAGAATGTAATAGTACGTAATCAGGTACAAAAAAGCGATCTTGC
ACAAAAGGAATTCAATAGACAATCACCGGATAGTACGAACATCAATCATC
AACGAGCTATTATCGGTGACTGGGCCAATGGatatcaaaaatcaacaaat
caaGCTGTCCCACCTATCAAAATAAATGCTGAAGCTCAATTAGCAAGTAT
AGGGCAGCCTTCAAACACCGAAAGTGGTGACAGTAATATAGTCCCACCTA
TTAAACTCCATGCGGAAACTCGGTCACCGAGTATCTCGCAACCTTCAAAT
ATGGACAAAACTAATGATATAGTACCACCAATTAAATGGAATGCTGAAAC
TCGATCAGCGAGTATATCTTCAAATGTGGTCAATGCTGATCATGTGGTAC
CACTGATCAAGGTAAATGCTGAAACGATTCCAAGTAAATCGATGATAGAA
aattcatcgaatatttcaccATCTAATGTTAAACAAAGCACTGGACAAAG
TTTGATGGAAGAAAACGCTAGTTTCAAACCCTTGTCAGCAAACACTGCAA
CAATTCAACAAAGTGTAGTTGCAAGGAACATAACTCATTATGGTGTCAAT
GTTTTGACGAATGAAGAGCAGTCGCACGTGGGTGAAGCTCTTTCATCAGG
ATCTGCAAGTGGAAGTGGGTTCGAGGCTGTTGAATCAGGGTCGGGCCAAC
CAGAATCAGAGCAGCAGAAAGATGACCAACTTTCTCCATCAACTATGAGT
GACGCATCTGAAGGAAATTCTCTTGACAAAGATGAAGATGATTCGAAGAC
CATTCCTTCCGTTCTTGGAAATCAAGGTAAAGAAACGTCCTCAAGTGACT
CGGAGAGTAGTGGTGAAGAAGATATTGAAAACTCCATATCATCTCTTCTT
CAAAGCAAAGCAAGTACTGATGTTTCAGAAAGCAGTGGTGAGTTGTCTAG
TGGAGATGATGAAAAATCAGGGGAAAAAGAAGATAGTCGGGAACAGCACA
ACGCGATATTAGACCTGGTCAAAGATATGGCACAATCTGCAGCCGAAGAA
AGTTCAGCGTCGACACCACCAGAAGAGAAAGATTCAGATTCTGGTGAATT
GTCAACAACTAGTAGCGTCGCTCATTCACTGAATGAATTTCCTTCTGAGG
ATGGTAAAAACTCTGATGAAAGgaattctgaaaaaaatccaaaaatgtcT
AGAGATCCATCAACTAAAGCTCCAGAGTTTGAAAATGCTTTTGTGTCCGA
CTCAGATACCTTTAAGGATAGTTCTATACCAAAGACACAAGCAAATGCCA
GTCCGACTGGGTCAGAGAACAATTTAACAGTGAAACCAGAATCAACTCAG
GGTATCGTTCGCGCGGTTGTAAATGAAGGAACTACTGAAGAACCTCGTGG
ACTTCCTCCTACTGTTACAAGTGAGACTTCCGtaaaaactattgaaaata
atGAACGAAAGAGTTCTGCTGACTTCCATCCCGCTGCACCTGTAGAAACG
GCTTCTTTGGTAGACAACAGCGATGAGGAATCTTTTGAAAGCAATCCAGC
CAACGATGATTTCGATTCATCTGTGGTGAAAAAGTCATCCATACCAATCC
TTCTGAAATCACCAGATGATGAATCTTCGGAAATTGAGGTGCTCACTGAT
GGCGGTGAAAGTGTTTCTGAGATCGCCAAACGCTCAGATATCCCAATTGA
TTTAGACACCTCAAGCAAGT
Run BLAST on NCBI

transcript from alignment at sc0000529:98209..103654-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025279 ID=TCONS_00025279|Name=TCONS_00025279|organism=Clytia hemisphaerica|type=transcript|length=5446bp|location=Sequence derived from alignment at sc0000529:98209..103654- (Clytia hemisphaerica)
TTTCAAATGAAATCTGTTGGAGTGTGTAAAAATATATATTTTCCGTTTGT
TTCGTCTGCTCCAAACCAAGACATATCAAGCAAGTGGTCCTCTAAAGGTG
AGATTATAGACTATTTCTCTATTCATAGTCTCCTTGAATCATATTTTATG
GTGTTTTCCGAAAAAAGGATAGAAACAACATCTTCATGTTTCTTTCCATG
CTTTCTCAGCAGAGGATTGTTGTGCACAAAGTGATTTGTTGAGCTGGGGA
GCTGTTAAGGGGGAAATGATTTGAGTGATCATGAAAGGTATGCAAGTTTT
TTTGTAAAAGAATTCAAAATTTTTGAAACCTTTTGATGTTCTCAACATTC
TAAAAATGTTCTTAAAATTATGTCCAGTTTCCTAAGAAATTGGGTGTTCT
TTAGCCTTGAAATGTTTTTTAGTTGTTCTTAATATTTTTGCCATCGAAGC
ATAAATGCTCTTATATAGTTTGTTCTTCTCTTAAAAAAATATTGTAGCAG
CAGTTTTCATTCATTCATTCATTGGTTTTCTCTTTTAGGGCGTTGACATG
ATTACAAAGACTTTTGATTGGTTTATTTGATCGGTAATGAAGAAGCTGTT
TATTATCTTATTATTTGGCTTGTTGTATGTGGCGCAAGCATTCCCTCTTC
AATTAAGTGGTGAGCCAGTTCATTTTTTCCCATGTTCATTAAATAAAGTA
TTTTGCTTTAAAGTGCTGCGACATTCCGAAGTTGATTTATCGGGGCACAG
TGTGAGGGGATCTTTTAAGAGAATCCCACTTTTCAAGAATGGTTTAATGG
AGTAGCGGGCTTTTTCTGATTAAAATAGGGAGTTTGAGTCGGTTTGAGTT
TTTAGGGAGTGGTTCCTAGTGGAATATTTAAATTAGATTTCATCCAAAAA
CATCCTAATTATTCTCTATGACTTCTTTTCACAGAGACTGGTGAGGAGTT
AGACGTCCACCAACGTTCGAAACGACATGGACAACATTCGACCCTTGCTG
ACCGAGAAGGTACGATTCATAAAACTAGAAATTATATGGTGTGCTTTTAT
CGATACAGATCAAAGAAGCTAGGCGCATGAAAAAAAAATATTATTTCTTT
ATTCTTATTTAAAGCTATTTCGAGCTTGACCTCTGACGGTTGGGGGTGAC
CGTGACACGGTATCGGCCTTTTTTCTGTCCGGTATTTCGGTATTTTAAGA
AAAAAAGTACGGTATTCCGGTATTTGAAATGCTGCCGTTGATGGTAAATT
GCCTAAAAATGCTTCAGTATTTCGTTTTTATTCTTAGAACTTCGGTATTT
CGTAACTTTAAAATCTTTCCGAATTGTTTTCTTCATAGAGAGACTTCCAA
AAATCGCCTGCGACGCTAAACTTTCTTAAATTTTAGAAACTACACCCATG
TTTTCCAATACAATCAGTTTTGACACAGTATGTATATAGCACTTTATCTC
TCTAAGTGTGGTGACATGGGGTCAGAAACAGCTCCACCTCTAGTCAGTCT
AGTGGTAACCTTTTTGTGGTTATAGTCCATCCACTATCCTTTAAATAATG
ACTTTTTACAAAACACGCTTTAGCCACAATAGCGGACCTGTAAATTAGTA
CAAGTTTTTCGCGCTTGCTTCGCTAGCATTATTTTGTTAAAATATTTCCC
CAACCCTTGCGACTTGCCTTTTTTTTGATTTGCCTCCCCAATCTTGGTCA
AGAAGCAATCATGCTATTACCCTTTTCTCAAAGGAAGGTGATGGGATAGG
TACTGCCTAATTCTCAAATTAGAACTAAAGAATTATCCATAAAAAGAGCT
TTTTGAGGTACTTAAAGTCTATTTCAAACTAGCTGGCAGTATTTTTTCAA
GCCTCAATAACTTTTGATTGATAGAATTTGAATTAAATAGCGATTTTGTG
CTCCTTGGAAAGACAAACAGGAGTGGGATATTGTCATAACGCGTTTTTAT
TTTTCAGTTCGTACGATCATCTCAGCGATCGTAGATGCCATCCTGGATGG
TGATAAGAAGAAACGATCTTCCGTTGAAGATGACGATTTCGTGGACGAAG
AGAACGACCCTTCCCTGCTGAAATCTCTTCAAGAAAAATCATNGTGGACG
AAGAGAACGACCCTTCCCTGAAATCTCTTCAAGAAAAATCATCTCAGAAG
TCTCACGTCAATGCTACTGATGTGGAATCTGCTCTTTTGGACGACGAAAA
AGATCTATCAGGTAGAAAATTATGAGTTTGTTTCATTTAAATTCCGTTCA
AGCCGAGTCAAAACTGAAGAATCAAAGCTGACATATATATGTCATATATC
TATATGACACCTATAGGCTGCCAATATCCCTCTAATTTGCGAAAGGGGCC
GCAATCTACATGATACCATCTAGATTTGCCTTGTAATAAGGCATTCGAAT
TGGCGTCAACAATCATATTCTCCGCTTGACAATTTTATTAAGAACAACTT
ATTAAAGTTTCAGTTAGGGAAGATATTATGTTGATTACGGTACACAAAAC
TTGCTTTTTCATTCAATTTTGGTGAGTAAGTAAGTAAAGGTCACGCCCAC
AAAGTATTTTCTAAGCTTCGTTATTTTAGTCTAATTCGCATCCCTTGTGA
ATAACAAAAACTATTTTAGAGATATGTATAGTTTGTATGACCCTGTGCTC
AGCCTGTATTTCACAGGGGGAAGTTGGACGAAAAAAAAGATTTATGCATT
TCTTTCCATTTTACTTTGTAGGTAGTGGAGAACAAGAGTCTGGGTCTGGT
GCACAAGATTCCTCTGGATTCACTGATGAACCGATAACAGAGAAAGTCAC
ATCTACTTTTAAAAATGCTCCACTGTCCCTAACTTCCCCTGAATTAAAAA
ACACTTCTTCATCAGTTCAAAGTTCTGAGAGAAAGAAACGCGAAGAGAAT
ATCCAAGATCAAGACATCGCTGTATCTGAAAAGAAGGAAATAATTGATGA
CGCTGTCATAAGGGATGTATCAGGTTTGATTGGAAAATCACCAACTGTTC
AAGATCCAAATCGTAACGAGGTTGCTAGAGAGAGGAATGGACTAGATATG
ATTGAAAAACGAGATATTTCTGATGCTGAACGCGGTGACAAATCAGTTGA
TCAAACCGAACAATCGCATCAAGATGATAGTGAAACGATCACTAATTATA
CGGGAATCCGAGATGAGAAACAACCTGATGACCCCAAAGTTGTGAATGCT
GGCAACTCAGGATCTGGTGAATCTTCAGGCTCTGGAGCAAATGATTTTGA
AGAAGGCGAAGACGGAGATGAAGCCAATGTCGTCAACAAACGAAATCAAA
TCTTGCAAGATGAAGAGGTCCAATCAAATGCTCCAGAAATGAAAAACTCT
TCGACGCAGAATGTAATAGTACGTAATCAGGTACAAAAAAGCGATCTTGC
ACAAAAGGAATTCAATAGACAATCACCGGATAGTACGAACATCAATCATC
AACGAGCTATTATCGGTGACTGGGCCAATGGATATCAAAAATCAACAAAT
CAAGCTGTCCCACCTATCAAAATAAATGCTGAAGCTCAATTAGCAAGTAT
AGGGCAGCCTTCAAACACCGAAAGTGGTGACAGTAATATAGTCCCACCTA
TTAAACTCCATGCGGAAACTCGGTCACCGAGTATCTCGCAACCTTCAAAT
ATGGACAAAACTAATGATATAGTACCACCAATTAAATGGAATGCTGAAAC
TCGATCAGCGAGTATATCTTCAAATGTGGTCAATGCTGATCATGTGGTAC
CACTGATCAAGGTAAATGCTGAAACGATTCCAAGTAAATCGATGATAGAA
AATTCATCGAATATTTCACCATCTAATGTTAAACAAAGCACTGGACAAAG
TTTGATGGAAGAAAACGCTAGTTTCAAACCCTTGTCAGCAAACACTGCAA
CAATTCAACAAAGTGTAGTTGCAAGGAACATAACTCATTATGGTGTCAAT
GTTTTGACGAATGAAGAGCAGTCGCACGTGGGTGAAGCTCTTTCATCAGG
ATCTGCAAGTGGAAGTGGGTTCGAGGCTGGTAAGTATTTGTTCAAACCAC
CTGATCCGATGTTTCAGACAAAGATCAAACGAGATGAACATATAAAGCTT
GACTAGTGTCATTTATATCCAATAAAACGTATATTTTTCACCATTCAATG
ATCCGCATCTGCAACGACCCACTTATTTAGCATTTCATTTCTGCCATTTA
AAGAAAAGAAGTCTCGCCTTCTTGAAAATGTTTCCAGATGAATCGTGTCA
GGTTCTACCAGAATTCGTCCGTCAGTAGTATACAAATGCTATTTGGATTT
ATTTTAAACTATTTAGCGAAAGCAGCCTTATTCATGCAATCGAGTACGTT
TTGTGGGTCTATTTCTGAAAATTGATGCTTTTTATATTTTCTTTTTTTGC
CATAGTTGAATCAGGGTCGGGCCAACCAGAATCAGAGCAGCAGAAAGATG
ACCAACTTTCTCCATCAACTATGAGTGACGCATCTGAAGGAAATTCTCTT
GACAAAGATGAAGATGATTCGAAGACCATTCCTTCCGTTCTTGGAAATCA
AGGTAAAGAAACGTCCTCAAGTGACTCGGAGAGTAGTGGTGAAGAAGATA
TTGAAAACTCCATATCATCTCTTCTTCAAAGCAAAGCAAGTACTGATGTT
TCAGAAAGCAGTGGTGAGTTGTCTAGTGGAGATGATGAAAAATCAGGGGA
AAAAGAAGATAGTCGGGAACAGCACAACGCGATATTAGACCTGGTCAAAG
ATATGGCACAATCTGCAGCCGAAGAAAGTTCAGCGTCGACACCACCAGAA
GAGAAAGATTCAGATTCTGGTGAATTGTCAACAACTAGTAGCGTCGCTCA
TTCACTGAATGAATTTCCTTCTGAGGATGGTAAAAACTCTGATGAAAGGA
ATTCTGAAAAAAATCCAAAAATGTCTAGAGATCCATCAACTAAAGCTCCA
GAGTTTGAAAATGCTTTTGTGTCCGACTCAGATACCTTTAAGGATAGTTC
TATACCAAAGACACAAGCAAATGCCAGTCCGACTGGGTCAGAGAACAATT
TAACAGTGAAACCAGAATCAACTCAGGGTATCGTTCGCGCGGTTGTAAAT
GAAGGAACTACTGAAGAACCTCGTGGACTTCCTCCTACTGTTACAAGTGA
GACTTCCGTAAAAACTATTGAAAATAATGAACGAAAGAGTTCTGCTGACT
TCCATCCCGCTGCACCTGTAGAAACGGCTTCTTTGGTAGACAACAGCGAT
GAGGAATCTTTTGAAAGCAATCCAGCCAACGATGATTTCGATTCATCTGT
GGTGAAAAAGTCATCCATACCAATCCTTCTGAAATCACCAGATGATGAAT
CTTCGGAAATTGAGGTGCTCACTGATGGCGGTGAAAGTGTTTCTGAGATC
GCCAAACGCTCAGATATCCCAATTGATTTAGACACCTCAAGCAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014193XLOC_014193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025279-exon-sc0000529-1575043694:103558..103654TCONS_00025279-exon-sc0000529-1575043694:103558..103654Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1575043694:103072..103116TCONS_00025279-exon-sc0000529-1575043694:103072..103116Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1575043694:102646..102720TCONS_00025279-exon-sc0000529-1575043694:102646..102720Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1575043694:101444..101697TCONS_00025279-exon-sc0000529-1575043694:101444..101697Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1575043694:99626..100933TCONS_00025279-exon-sc0000529-1575043694:99626..100933Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1575043694:98209..99249TCONS_00025279-exon-sc0000529-1575043694:98209..99249Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1510915933:103558..103654TCONS_00025279-exon-sc0000529-1510915933:103558..103654Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1510915933:103072..103116TCONS_00025279-exon-sc0000529-1510915933:103072..103116Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1510915933:102646..102720TCONS_00025279-exon-sc0000529-1510915933:102646..102720Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1510915933:101444..101697TCONS_00025279-exon-sc0000529-1510915933:101444..101697Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1510915933:99626..100933TCONS_00025279-exon-sc0000529-1510915933:99626..100933Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1510915933:98209..99249TCONS_00025279-exon-sc0000529-1510915933:98209..99249Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1491911889:103558..103654TCONS_00025279-exon-sc0000529-1491911889:103558..103654Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1491911889:103072..103116TCONS_00025279-exon-sc0000529-1491911889:103072..103116Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1491911889:102646..102720TCONS_00025279-exon-sc0000529-1491911889:102646..102720Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1491911889:101444..101697TCONS_00025279-exon-sc0000529-1491911889:101444..101697Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1491911889:99626..100933TCONS_00025279-exon-sc0000529-1491911889:99626..100933Clytia hemisphaericaexon
TCONS_00025279-exon-sc0000529-1491911889:98209..99249TCONS_00025279-exon-sc0000529-1491911889:98209..99249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000529supercontigsc0000529:98209..103654 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.256197	0.0953171	0	0.0910393	0.0335298	0.165271	2.85982	3.89526	1.39018	0.849773	8.88761e-08	0.972048	1.88831	2.32397	3.25508	8.41727	5.85791	4.73365	0.0361184	0.0939772	2.26294	1.79454	1.68694	1.51409	0.71685	4.54022e-05	0.518933	1.74806e-05	0.273589	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top