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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025174 ID=TCONS_00025174|Name=TCONS_00025174|organism=Clytia hemisphaerica|type=transcript|length=3208bp
gtatttttattttaaaaaatggaCATCCTTATTTTTGAGGTGATTGAATC
TACTAATCTACTTGATATCCTTGAACCTTGTTCAGAAAATCATTAGGATT
TGTCTCTTTTTTTCTCTAGGTGGTAATAagaatacattttataaagaaTA
CGCGATGGGTGACCAGCCAGCAGTGAATGAAAGATGGCAAGGAAAATGGG
ACCGTGATGAAATTCGTTGGCATATGGATTATGTCAATGCTAATCTTCAA
AAGTTTATGCCTGATTTGATAAAAGAAGGAGCCAGGGTCTTTGTACCATT
GTGTGGTAAAACATTGGATATGAAATGGTTCTATGATAAAGGCTGTACTG
TGGTAGGAGTAGAGGCTGTAGAAAAAGCTGTTGTTGAATATTTTGCAGAA
CAGCAAATAGAGTATGAAACAACCAATATTGAAGGGTTTCAGGTGTATAC
ATCCAAAGACTCGAGAATGCAAATCTTCAAAggcaatttgttcaatttta
ATGAGATCATTGCCGGTGGAAAATTTGATCACTTTTGGGACAAAAGTAGT
TTAGTTGCTATTGATAAAGATACACGTGAGAAGTATGTTGATTTGTTTTC
AAGAGTTATGAAATCGGCTTACACTGGACTCCTTGAAGTATTTGAGTACG
ATACATCTTTTCATTCAGAGCAaccttttccaatttttcttgaAGATATG
AATAAAATGTATTCTGATTTGTTTACTTATAAGGAAATTTCTCGATTAGA
AGATACCACTTGGGCGTATCCTAGAAGCACAGTGACTTACACTGTCACTA
GAAAGTGAATTGAACAATAATAAgtgtcattttttgttttgtttgagttt
tattttgtttaggTTACCTTTCTCATAgagagaatattttttttgcttta
tactAGTTATTTTGTAAAGAACTGAAATGTCATAAAATGACCTTTATATC
TATAATTTTGATATTGCTGATTTAATATAAAAACATCAATAAATGGATTT
GAATTTGCCTTATATAAAATGTAAttgcgaaaatattttttgtcacaCTT
ACAATTCTTTGAAGGATAAGAATCGTCCCTTTAAGCTAACTTTTACAATG
CTTTGCTGTTATGTTAACGTACCATTTGAtacactttttatttttagatg
aaGTTCTTTAAGATAATTTCAGCAGTAACAGTGGCATCTGCAGCAGTGGG
TTACCAATGGTTCAAGCTACCACAACAAGACATTACAAAAGTACGAAAAA
TGCTTTTCAAAAATGGAAAACCTGTGGTATTTGCCCACAGAGCTGGACAA
TTCGAGGCACCTGAAAACACATTGATTGCTATTGAAACAGCTCACAAGAA
TGGGGCAACTGCTGTTGAAATTGATCTTGACTTCACCAAGGATGGCATTC
CAGTCATCATACATGATGATACAGTGGATAGAACAACGAATGGTACGGGA
CCGCTCAATATgtttaattttgaagaattaCGTAGTTTGAATGCTGCTCA
AGACCACCCATTTATTattgttcaaaacaaaaagattccACACCAATACG
AACAGATTCCAACTTTAGAGGAAGCAGTTAAATCATGTATTGACAAAGGC
TTAACCATTGACCTTGACGTCAAATCCAGTCCACAAAAAGTTGCAAAAGC
TTTGAAAGATGTGTTACAGAAGTATCCAAATGCTCatgagaatatttttg
ttacgTCTTTTTATCCGCAATACTTGTACACATTGCGTAGAGAATGTCCT
GACTTTGCTTTTGGTGTTATCTGGCGGCCCCATTATTTGGGGAAGACAAT
ATCAGGGGAACCAAGATATTCACCTTTCCATATGTTTTACATGTCGTTTT
TAGATGCTGTTTTACAGTATTTGGTTCATAATTGGGCTTCACGTTTCCTT
GGAATTTCAATGGCTGTCACTAACAAAAATGTTTTATCTGAATATTATTT
GAAATGCTGGAGAGATCAGAATGTTGAGTTAATTGTTTGGACTGTTAATA
GCCCAACACAAaaggaatattttttaaatcaccTTGGAGTGCCTATCATC
ACTGATTCTGTTCTGGATGATGCTAAATGCAAAGAACAAACAACTTGATT
TGGTGAGAATCAATAGAAGATGGAATATCAGAATGCACACCAGGCctggc
ggaacaaccgtaaaaatGGGGGGgttgaaggctcaaaatgagataaattc
GTTAGGAATTCAAGAAAAAATCTCaattgctcaaaagtgggggaggctga
agtctcccgaGTCTCCCCACTTCTGCCGGGCCTGCACACATTCACTCAAT
GAGTTAATTTTTGAATAACATTTTAGATAATATTTGCTTCATAGATAACT
CTAGCTAGTAAGGCGTAGCTGAAATAGTGTGTTCAAGGGGGTCAAACAAA
ATGCCACACATCTGACCATTATTTCACTCTCATTGGTTTCGGCTCACAAA
AAGTAATATTTGCTTCAGctttttgtaatttattttcaagaataattttc
agattcgaaaTTCTCAGATATTAGGTTTTATGTCTAGCTTAATTGAAGCT
GCTTTTATTCTTGAagcccacaaaacaaaaagtgtTATAAGAATtgtttg
aattgtttttaaatttttatgtattttttaaactataaaaaaatattttc
tgttaggcgaaaatgaaaaaaatgtagtgtttccggaaaccggccaggtg
aaaaaaaaattttctgacccggccacAGACTATGAAttcatctatatggt
tcataataaagaaaatcaagttgaccgttccTTTGGTCTTGAAAGcattc
ccgcttgtaaatcaagttttgttctttaatagttgatacattagtattca
gggcttactttaTACTGTTTGTATGTTTAAAGTTCTAATTTATCTTTAac
gttctatttcaatgatcttattaagttatcaaaaatatagttaaataaat
attttccggccagccgcatgagagcttttttctctcacccgcattccgga
aactctacatttttttattttagcctTATTTGTATATTTTCATAACTTTA
CAAGCTACACAAATCTTTTTCATTATACTCACAAATTCATAACATTCCAT
TTCACTGTAATTTTTTACgtaaaagcattttttttttttgcatttggaTT
TACTTTAAATTTCTACATGTAAATAATTAAAAAGCCAATAGAAAATATTA
AGTTACCA Run BLAST on NCBI transcript from alignment at sc0000524:175270..178477- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025174 ID=TCONS_00025174|Name=TCONS_00025174|organism=Clytia hemisphaerica|type=transcript|length=3208bp|location=Sequence derived from alignment at sc0000524:175270..178477- (Clytia hemisphaerica)
GTATTTTTATTTTAAAAAATGGACATCCTTATTTTTGAGGTGATTGAATC
TACTAATCTACTTGATATCCTTGAACCTTGTTCAGAAAATCATTAGGATT
TGTCTCTTTTTTTCTCTAGGTGGTAATAAGAATACATTTTATAAAGAATA
CGCGATGGGTGACCAGCCAGCAGTGAATGAAAGATGGCAAGGAAAATGGG
ACCGTGATGAAATTCGTTGGCATATGGATTATGTCAATGCTAATCTTCAA
AAGTTTATGCCTGATTTGATAAAAGAAGGAGCCAGGGTCTTTGTACCATT
GTGTGGTAAAACATTGGATATGAAATGGTTCTATGATAAAGGCTGTACTG
TGGTAGGAGTAGAGGCTGTAGAAAAAGCTGTTGTTGAATATTTTGCAGAA
CAGCAAATAGAGTATGAAACAACCAATATTGAAGGGTTTCAGGTGTATAC
ATCCAAAGACTCGAGAATGCAAATCTTCAAAGGCAATTTGTTCAATTTTA
ATGAGATCATTGCCGGTGGAAAATTTGATCACTTTTGGGACAAAAGTAGT
TTAGTTGCTATTGATAAAGATACACGTGAGAAGTATGTTGATTTGTTTTC
AAGAGTTATGAAATCGGCTTACACTGGACTCCTTGAAGTATTTGAGTACG
ATACATCTTTTCATTCAGAGCAACCTTTTCCAATTTTTCTTGAAGATATG
AATAAAATGTATTCTGATTTGTTTACTTATAAGGAAATTTCTCGATTAGA
AGATACCACTTGGGCGTATCCTAGAAGCACAGTGACTTACACTGTCACTA
GAAAGTGAATTGAACAATAATAAGTGTCATTTTTTGTTTTGTTTGAGTTT
TATTTTGTTTAGGTTACCTTTCTCATAGAGAGAATATTTTTTTTGCTTTA
TACTAGTTATTTTGTAAAGAACTGAAATGTCATAAAATGACCTTTATATC
TATAATTTTGATATTGCTGATTTAATATAAAAACATCAATAAATGGATTT
GAATTTGCCTTATATAAAATGTAATTGCGAAAATATTTTTTGTCACACTT
ACAATTCTTTGAAGGATAAGAATCGTCCCTTTAAGCTAACTTTTACAATG
CTTTGCTGTTATGTTAACGTACCATTTGATACACTTTTTATTTTTAGATG
AAGTTCTTTAAGATAATTTCAGCAGTAACAGTGGCATCTGCAGCAGTGGG
TTACCAATGGTTCAAGCTACCACAACAAGACATTACAAAAGTACGAAAAA
TGCTTTTCAAAAATGGAAAACCTGTGGTATTTGCCCACAGAGCTGGACAA
TTCGAGGCACCTGAAAACACATTGATTGCTATTGAAACAGCTCACAAGAA
TGGGGCAACTGCTGTTGAAATTGATCTTGACTTCACCAAGGATGGCATTC
CAGTCATCATACATGATGATACAGTGGATAGAACAACGAATGGTACGGGA
CCGCTCAATATGTTTAATTTTGAAGAATTACGTAGTTTGAATGCTGCTCA
AGACCACCCATTTATTATTGTTCAAAACAAAAAGATTCCACACCAATACG
AACAGATTCCAACTTTAGAGGAAGCAGTTAAATCATGTATTGACAAAGGC
TTAACCATTGACCTTGACGTCAAATCCAGTCCACAAAAAGTTGCAAAAGC
TTTGAAAGATGTGTTACAGAAGTATCCAAATGCTCATGAGAATATTTTTG
TTACGTCTTTTTATCCGCAATACTTGTACACATTGCGTAGAGAATGTCCT
GACTTTGCTTTTGGTGTTATCTGGCGGCCCCATTATTTGGGGAAGACAAT
ATCAGGGGAACCAAGATATTCACCTTTCCATATGTTTTACATGTCGTTTT
TAGATGCTGTTTTACAGTATTTGGTTCATAATTGGGCTTCACGTTTCCTT
GGAATTTCAATGGCTGTCACTAACAAAAATGTTTTATCTGAATATTATTT
GAAATGCTGGAGAGATCAGAATGTTGAGTTAATTGTTTGGACTGTTAATA
GCCCAACACAAAAGGAATATTTTTTAAATCACCTTGGAGTGCCTATCATC
ACTGATTCTGTTCTGGATGATGCTAAATGCAAAGAACAAACAACTTGATT
TGGTGAGAATCAATAGAAGATGGAATATCAGAATGCACACCAGGCCTGGC
GGAACAACCGTAAAAATGGGGGGGTTGAAGGCTCAAAATGAGATAAATTC
GTTAGGAATTCAAGAAAAAATCTCAATTGCTCAAAAGTGGGGGAGGCTGA
AGTCTCCCGAGTCTCCCCACTTCTGCCGGGCCTGCACACATTCACTCAAT
GAGTTAATTTTTGAATAACATTTTAGATAATATTTGCTTCATAGATAACT
CTAGCTAGTAAGGCGTAGCTGAAATAGTGTGTTCAAGGGGGTCAAACAAA
ATGCCACACATCTGACCATTATTTCACTCTCATTGGTTTCGGCTCACAAA
AAGTAATATTTGCTTCAGCTTTTTGTAATTTATTTTCAAGAATAATTTTC
AGATTCGAAATTCTCAGATATTAGGTTTTATGTCTAGCTTAATTGAAGCT
GCTTTTATTCTTGAAGCCCACAAAACAAAAAGTGTTATAAGAATTGTTTG
AATTGTTTTTAAATTTTTATGTATTTTTTAAACTATAAAAAAATATTTTC
TGTTAGGCGAAAATGAAAAAAATGTAGTGTTTCCGGAAACCGGCCAGGTG
AAAAAAAAATTTTCTGACCCGGCCACAGACTATGAATTCATCTATATGGT
TCATAATAAAGAAAATCAAGTTGACCGTTCCTTTGGTCTTGAAAGCATTC
CCGCTTGTAAATCAAGTTTTGTTCTTTAATAGTTGATACATTAGTATTCA
GGGCTTACTTTATACTGTTTGTATGTTTAAAGTTCTAATTTATCTTTAAC
GTTCTATTTCAATGATCTTATTAAGTTATCAAAAATATAGTTAAATAAAT
ATTTTCCGGCCAGCCGCATGAGAGCTTTTTTCTCTCACCCGCATTCCGGA
AACTCTACATTTTTTTATTTTAGCCTTATTTGTATATTTTCATAACTTTA
CAAGCTACACAAATCTTTTTCATTATACTCACAAATTCATAACATTCCAT
TTCACTGTAATTTTTTACGTAAAAGCATTTTTTTTTTTTGCATTTGGATT
TACTTTAAATTTCTACATGTAAATAATTAAAAAGCCAATAGAAAATATTA
AGTTACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025174-exon-sc0000524-1575043694:175270..178477 | TCONS_00025174-exon-sc0000524-1575043694:175270..178477 | Clytia hemisphaerica | exon |
| TCONS_00025174-exon-sc0000524-1510915933:175270..178477 | TCONS_00025174-exon-sc0000524-1510915933:175270..178477 | Clytia hemisphaerica | exon |
| TCONS_00025174-exon-sc0000524-1491911889:175270..178477 | TCONS_00025174-exon-sc0000524-1491911889:175270..178477 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000524 | supercontig | sc0000524:175270..178477 - |
Blast
BLAST of TCONS_00025174 vs. Swiss-Prot (Human)
Match: GDE1 (Glycerophosphodiester phosphodiesterase 1 OS=Homo sapiens GN=GDE1 PE=1 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 6.320e-61 Identity = 113/266 (42.48%), Postives = 158/266 (59.40%), Query Frame = 2
Query: 1283 AHRAGQFEAPENTLIAIETAHKNGATAVEIDLDFTKDGIPVIIHDDTVDRTTNGTGPLNMFNFEELRSLNAAQDHPFIIVQNKKIPHQYEQIPTLEEAVKSCIDKGLTIDLDVKSSPQKVAKALKDVLQKYPNAHENIFVTSFYPQYLYTLRRECPDFAFGVIWRPHYLGKTISGEPRYSPF-HMFYMSFLDAVLQYLVHNWASRFLGISMAVTNKNVLSEYYLKCWRDQNVELIVWTVNSPTQKEYFLNHLGVPIITDSVLDDAK 2077
AHR G +APENTL AI A KNGAT VE+D++FT DGIPV++HD+TVDRTT+GTG L FE++R LN A +H P E+IPTL EAV C++ LTI DVK K +ALK + ++P + N V SF P+ +Y +R+ D + RP L T G+PRY F F +D +L + +HN GIS + K+ +S YLK W + ++++ WTVN+ +K Y+ +HLG ITDS+++D +
Sbjct: 69 AHRGGSHDAPENTLAAIRQAAKNGATGVELDIEFTSDGIPVLMHDNTVDRTTDGTGRLCDLTFEQIRKLNPAANHRL----RNDFPD--EKIPTLREAVAECLNHNLTIFFDVKGHAHKATEALKKMYMEFPQLYNNSVVCSFLPEVIYKMRQTDRDVITALTHRPWSLSHTGDGKPRYDTFWKHFIFVMMDILLDWSMHNILWYLCGISAFLMQKDFVSPAYLKKWSAKGIQVVGWTVNTFDEKSYYESHLGSSYITDSMVEDCE 328
The following BLAST results are available for this feature:
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